{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"size fractionation\", experiment.platform = \"ILLUMINA\" and tissue_curation = \"Skin\"", "rows": [[49015, "SRR7613129", "SRX4477829", "SRS3603028", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 100 ZF skin smallRNAseq", "GSM3309731", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "NH FLI 100 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "GSM3309731", "GSM3309731: NH FLI 100 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309731", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309731", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1018240050.0, 20364801.0, "GSM3309731 r1", "0:50", "A:207814229;C:262063346;G:311334117;T:236957867;N:70491", 50, null, null, null, 207814229, 262063346, 311334117, 236957867, 70491, "SRX4477829", "SRS3603028", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.1074, null, 0.00618, null, 0.9906, null, 0.54934, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49016, "SRR7613128", "SRX4477828", "SRS3603027", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 111 ZF skin smallRNAseq", "GSM3309730", null, "source name:skin|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "NH FLI 111 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "GSM3309730", "GSM3309730: NH FLI 111 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309730", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309730", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 356381250.0, 7127625.0, "GSM3309730 r1", "0:50", "A:70456264;C:88928211;G:109830748;T:87141036;N:24991", 50, null, null, null, 70456264, 88928211, 109830748, 87141036, 24991, "SRX4477828", "SRS3603027", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.12249, null, 0.00713, null, 0.99299, null, 0.51987, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49017, "SRR7613127", "SRX4477827", "SRS3603046", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 109 ZF skin smallRNAseq", "GSM3309729", null, "source name:skin|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "NH FLI 109 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "GSM3309729", "GSM3309729: NH FLI 109 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309729", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309729", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 591923400.0, 11838468.0, "GSM3309729 r1", "0:50", "A:118873766;C:162031990;G:180619895;T:130356928;N:40821", 50, null, null, null, 118873766, 162031990, 180619895, 130356928, 40821, "SRX4477827", "SRS3603046", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.09696, null, 0.00911, null, 0.99133, null, 0.52082, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49018, "SRR7613126", "SRX4477826", "SRS3603047", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 108 ZF skin smallRNAseq", "GSM3309728", null, "source name:skin|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "NH FLI 108 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "GSM3309728", "GSM3309728: NH FLI 108 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309728", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309728", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 736154900.0, 14723098.0, "GSM3309728 r1", "0:50", "A:138956520;C:196877364;G:231633259;T:168650452;N:37305", 50, null, null, null, 138956520, 196877364, 231633259, 168650452, 37305, "SRX4477826", "SRS3603047", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01397, null, 0.0029, null, 0.99312, null, 0.79541, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49019, "SRR7613125", "SRX4477825", "SRS3603026", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 107 ZF skin smallRNAseq", "GSM3309727", null, "source name:skin|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "NH FLI 107 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "GSM3309727", "GSM3309727: NH FLI 107 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309727", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309727", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 749544400.0, 14990888.0, "GSM3309727 r1", "0:50", "A:141473710;C:216076836;G:236230720;T:155730665;N:32469", 50, null, null, null, 141473710, 216076836, 236230720, 155730665, 32469, "SRX4477825", "SRS3603026", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.03825, null, 0.00867, null, 0.99439, null, 0.74015, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49020, "SRR7613124", "SRX4477824", "SRS3603024", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 106 ZF skin smallRNAseq", "GSM3309726", null, "source name:skin|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "NH FLI 106 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male", "GSM3309726", "GSM3309726: NH FLI 106 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309726", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309726", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 611281450.0, 12225629.0, "GSM3309726 r1", "0:50", "A:111669012;C:149529261;G:189562873;T:160496848;N:23456", 50, null, null, null, 111669012, 149529261, 189562873, 160496848, 23456, "SRX4477824", "SRS3603024", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02484, null, 0.00442, null, 0.9936, null, 0.64597, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49021, "SRR7613123", "SRX4477823", "SRS3603023", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 150 ZF skin smallRNAseq", "GSM3309725", null, "source name:skin|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "NH FLI 150 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "GSM3309725", "GSM3309725: NH FLI 150 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309725", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309725", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 2447513950.0, 48950279.0, "GSM3309725 r1", "0:50", "A:468043633;C:693473223;G:731577603;T:554251791;N:167700", 50, null, null, null, 468043633, 693473223, 731577603, 554251791, 167700, "SRX4477823", "SRS3603023", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.07052, null, 0.01139, null, 0.99263, null, 0.59059, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49022, "SRR7613122", "SRX4477822", "SRS3603025", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 149 ZF skin smallRNAseq", "GSM3309724", null, "source name:skin|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "NH FLI 149 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "GSM3309724", "GSM3309724: NH FLI 149 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309724", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309724", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1871316900.0, 37426338.0, "GSM3309724 r1", "0:50", "A:380496272;C:509217150;G:560916561;T:420592548;N:94369", 50, null, null, null, 380496272, 509217150, 560916561, 420592548, 94369, "SRX4477822", "SRS3603025", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.03136, null, 0.00816, null, 0.99488, null, 0.79162, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49023, "SRR7613121", "SRX4477821", "SRS3603022", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 147 ZF skin smallRNAseq", "GSM3309723", null, "source name:skin|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "NH FLI 147 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "GSM3309723", "GSM3309723: NH FLI 147 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309723", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309723", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 445551200.0, 8911024.0, "GSM3309723 r1", "0:50", "A:89205774;C:110497307;G:135908107;T:109919980;N:20032", 50, null, null, null, 89205774, 110497307, 135908107, 109919980, 20032, "SRX4477821", "SRS3603022", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01905, null, 0.00266, null, 0.99504, null, 0.62127, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49024, "SRR7613120", "SRX4477820", "SRS3603021", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 146 ZF skin smallRNAseq", "GSM3309722", null, "source name:skin|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "NH FLI 146 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "GSM3309722", "GSM3309722: NH FLI 146 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309722", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309722", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 982200100.0, 19644002.0, "GSM3309722 r1", "0:50", "A:192209302;C:247406918;G:306793998;T:235751163;N:38719", 50, null, null, null, 192209302, 247406918, 306793998, 235751163, 38719, "SRX4477820", "SRS3603021", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02155, null, 0.00424, null, 0.99368, null, 0.62937, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49025, "SRR7613119", "SRX4477819", "SRS3603020", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 145 ZF skin smallRNAseq", "GSM3309721", null, "source name:skin|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "NH FLI 145 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male", "GSM3309721", "GSM3309721: NH FLI 145 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309721", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309721", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1336985700.0, 26739714.0, "GSM3309721 r1", "0:50", "A:257049527;C:368876598;G:422514962;T:288505412;N:39201", 50, null, null, null, 257049527, 368876598, 422514962, 288505412, 39201, "SRX4477819", "SRS3603020", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.04358, null, 0.00841, null, 0.99312, null, 0.76026, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49026, "SRR7613118", "SRX4477818", "SRS3603019", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 137 ZF skin smallRNAseq", "GSM3309720", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "NH FLI 137 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "GSM3309720", "GSM3309720: NH FLI 137 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309720", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309720", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1039359300.0, 20787186.0, "GSM3309720 r1", "0:50", "A:200252400;C:286646217;G:322574775;T:229813195;N:72713", 50, null, null, null, 200252400, 286646217, 322574775, 229813195, 72713, "SRX4477818", "SRS3603019", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.10832, null, 0.00654, null, 0.99113, null, 0.52929, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49027, "SRR7613117", "SRX4477817", "SRS3603018", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 136 ZF skin smallRNAseq", "GSM3309719", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "NH FLI 136 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "GSM3309719", "GSM3309719: NH FLI 136 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309719", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309719", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 858942900.0, 17178858.0, "GSM3309719 r1", "0:50", "A:168340182;C:217323317;G:266544838;T:206688895;N:45668", 50, null, null, null, 168340182, 217323317, 266544838, 206688895, 45668, "SRX4477817", "SRS3603018", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.00791, null, 0.00151, null, 0.99439, null, 0.71291, null, 50, null, "T", null, "under 1.2% mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49028, "SRR7613116", "SRX4477816", "SRS3603017", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 135 ZF skin smallRNAseq", "GSM3309718", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "NH FLI 135 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "GSM3309718", "GSM3309718: NH FLI 135 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309718", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309718", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1468015400.0, 29360308.0, "GSM3309718 r1", "0:50", "A:275374756;C:419939586;G:454098567;T:318538086;N:64405", 50, null, null, null, 275374756, 419939586, 454098567, 318538086, 64405, "SRX4477816", "SRS3603017", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01694, null, 0.00341, null, 0.99511, null, 0.72261, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49029, "SRR7613115", "SRX4477815", "SRS3603016", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 134 ZF skin smallRNAseq", "GSM3309717", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "NH FLI 134 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "GSM3309717", "GSM3309717: NH FLI 134 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309717", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309717", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 678693700.0, 13573874.0, "GSM3309717 r1", "0:50", "A:137270784;C:164359833;G:207871154;T:169165189;N:26740", 50, null, null, null, 137270784, 164359833, 207871154, 169165189, 26740, "SRX4477815", "SRS3603016", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02269, null, 0.00427, null, 0.99295, null, 0.61091, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49030, "SRR7613114", "SRX4477814", "SRS3603015", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 133 ZF skin smallRNAseq", "GSM3309716", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "NH FLI 133 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:2 years|Sex:male", "GSM3309716", "GSM3309716: NH FLI 133 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309716", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309716", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 847740400.0, 16954808.0, "GSM3309716 r1", "0:50", "A:168475291;C:220114466;G:260254419;T:198870005;N:26219", 50, null, null, null, 168475291, 220114466, 260254419, 198870005, 26219, "SRX4477814", "SRS3603015", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02431, null, 0.00324, null, 0.99226, null, 0.63318, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49031, "SRR7613113", "SRX4477813", "SRS3603014", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 125 ZF skin smallRNAseq", "GSM3309715", null, "source name:skin|strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "NH FLI 125 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "GSM3309715", "GSM3309715: NH FLI 125 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309715", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309715", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1020735000.0, 20414700.0, "GSM3309715 r1", "0:50", "A:205383345;C:253177983;G:308564152;T:253535814;N:73706", 50, null, null, null, 205383345, 253177983, 308564152, 253535814, 73706, "SRX4477813", "SRS3603014", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.10278, null, 0.00523, null, 0.99155, null, 0.53907, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49032, "SRR7613112", "SRX4477812", "SRS3603012", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 122 ZF skin smallRNAseq", "GSM3309714", null, "source name:skin|strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "NH FLI 122 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "GSM3309714", "GSM3309714: NH FLI 122 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309714", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309714", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 647896400.0, 12957928.0, "GSM3309714 r1", "0:50", "A:130330780;C:160929346;G:200383433;T:156218597;N:34244", 50, null, null, null, 130330780, 160929346, 200383433, 156218597, 34244, "SRX4477812", "SRS3603012", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.00732, null, 0.0014, null, 0.99401, null, 0.68357, null, 50, null, "T", null, "under 1.2% mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49033, "SRR7613111", "SRX4477811", "SRS3603013", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 121 ZF skin smallRNAseq", "GSM3309713", null, "source name:skin|strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "NH FLI 121 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "GSM3309713", "GSM3309713: NH FLI 121 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309713", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309713", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 1387064850.0, 27741297.0, "GSM3309713 r1", "0:50", "A:262170854;C:395102028;G:446088168;T:283643764;N:60036", 50, null, null, null, 262170854, 395102028, 446088168, 283643764, 60036, "SRX4477811", "SRS3603013", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01646, null, 0.00363, null, 0.9922, null, 0.73895, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49034, "SRR7613110", "SRX4477810", "SRS3603011", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 120 ZF skin smallRNAseq", "GSM3309712", null, "source name:skin|strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "NH FLI 120 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "GSM3309712", "GSM3309712: NH FLI 120 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309712", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309712", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 771712600.0, 15434252.0, "GSM3309712 r1", "0:50", "A:154765175;C:193689306;G:236383702;T:186844174;N:30243", 50, null, null, null, 154765175, 193689306, 236383702, 186844174, 30243, "SRX4477810", "SRS3603011", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02376, null, 0.00465, null, 0.99166, null, 0.64918, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49035, "SRR7613109", "SRX4477809", "SRS3603010", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 119 ZF skin smallRNAseq", "GSM3309711", null, "source name:skin|strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "NH FLI 119 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male", "GSM3309711", "GSM3309711: NH FLI 119 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309711", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309711", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 582866200.0, 11657324.0, "GSM3309711 r1", "0:50", "A:113005827;C:152497718;G:181963234;T:135381588;N:17833", 50, null, null, null, 113005827, 152497718, 181963234, 135381588, 17833, "SRX4477809", "SRS3603010", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02894, null, 0.00364, null, 0.99208, null, 0.58438, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49036, "SRR7613108", "SRX4477808", "SRS3603008", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 98 ZF skin smallRNAseq", "GSM3309710", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "NH FLI 98 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "GSM3309710", "GSM3309710: NH FLI 98 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309710", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309710", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 663294800.0, 13265896.0, "GSM3309710 r1", "0:50", "A:137734100;C:161855118;G:201382193;T:162288125;N:35264", 50, null, null, null, 137734100, 161855118, 201382193, 162288125, 35264, "SRX4477808", "SRS3603008", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.00618, null, 0.00111, null, 0.99478, null, 0.65659, null, 50, null, "T", null, "under 1.2% mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49037, "SRR7613107", "SRX4477807", "SRS3603009", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 96 ZF skin smallRNAseq", "GSM3309709", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "NH FLI 96 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "GSM3309709", "GSM3309709: NH FLI 96 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309709", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309709", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 569130200.0, 11382604.0, "GSM3309709 r1", "0:50", "A:116615049;C:147340637;G:176081367;T:129067210;N:25937", 50, null, null, null, 116615049, 147340637, 176081367, 129067210, 25937, "SRX4477807", "SRS3603009", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01763, null, 0.00207, null, 0.99389, null, 0.63527, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49038, "SRR7613106", "SRX4477806", "SRS3603007", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 94 ZF skin smallRNAseq", "GSM3309708", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "NH FLI 94 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "GSM3309708", "GSM3309708: NH FLI 94 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309708", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309708", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 941640450.0, 18832809.0, "GSM3309708 r1", "0:50", "A:181731779;C:249059327;G:290464823;T:220348739;N:35782", 50, null, null, null, 181731779, 249059327, 290464823, 220348739, 35782, "SRX4477806", "SRS3603007", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.03203, null, 0.00641, null, 0.98993, null, 0.72488, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"], [49039, "SRR7613105", "SRX4477805", "SRS3603006", "SRP155559", "PRJNA483229", "Sequencing of Danio rerio skin for 5 age groups", "GSE117820", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 85 ZF skin smallRNAseq", "GSM3309707", null, "source name:skin|strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "NH FLI 85 ZF skin smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "skin", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:skin|age:6 month|Sex:male", "GSM3309707", "GSM3309707: NH FLI 85 ZF skin smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309707", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309707", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155559", null, null, null, null, 974950550.0, 19499011.0, "GSM3309707 r1", "0:50", "A:188952378;C:263095911;G:305812761;T:217059876;N:29624", 50, null, null, null, 188952378, 263095911, 305812761, 217059876, 29624, "SRX4477805", "SRS3603006", "SRA745967", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.03216, null, 0.00571, null, 0.99015, null, 0.67028, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Skin", "Surface Structure"]], "truncated": false, "filtered_table_rows_count": 25, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"experiment.platform\" = :p1 and \"tissue_curation\" = :p2 order by rowid limit 101", "params": {"p0": "size fractionation", "p1": "ILLUMINA", "p2": "Skin"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "ncRNA-Seq", "label": "ncRNA-Seq", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&experiment.library_strategy=ncRNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "size fractionation", "label": "size fractionation", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.platform=ILLUMINA&tissue_curation=Skin", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "SINGLE", "label": "SINGLE", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&tissue_curation=Skin", "selected": true}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "Adult", "label": "Adult", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&devstage_curation_coarse=Adult", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "Adult", "label": "Adult", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&devstage_curation=Adult", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "Surface Structure", "label": "Surface Structure", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&tissue_curation_coarse=Surface+Structure", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "Skin", "label": "Skin", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA", "selected": true}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin", "results": [{"value": "unknown", "label": "unknown", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=size+fractionation&experiment.platform=ILLUMINA&tissue_curation=Skin&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 127.3689480003668}