{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"other\", technology = \"unknown\" and tissue_curation_coarse = \"Nervous System\"", "rows": [[7950, "ERR015567", "ERX005930", "ERS000089", "ERP000263", "PRJEB2208", "Zebrafish gene three prime end pull down for genome annotation", "E-MTAB-308", "Transcriptome Analysis", null, null, null, "RNA extracted from male adult zebrafish head", null, "SAMEA708835", "SC", "ENA FIRST PUBLIC:2010 02 26T10:44:13Z|ENA LAST UPDATE:2018 03 08T15:51:30Z|External Id:SAMEA708835|INSDC center name:SC|INSDC first public:2010 02 26T10:44:13Z|INSDC last update:2018 03 08T15:51:30Z|INSDC status:public|Submitter Id:ZF male head sample1|common name:zebrafish|sample name:ZF male head sample1|scientific name:Danio rerio|sex:male|strain:Tuebingen", null, null, null, null, null, null, null, null, "Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation", "E MTAB 308:Illumina Genome Analyzer II sequencing of adult Zebrafish male head dpf three prime pull down paired end 250 to 300 bp insert", "Zebrafish adult male head mRNA three prime end", "Zebrafish gene three prime end pull down for genome annotation", "20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl.   RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin  magnetic beads.   post washing by pull down on a magnet  the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB.   post further washing  the double strand cDNA was released from the beads with BpmI NEB.   The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp.", "Experimental Factor: DEVELOPMENTAL STAGE:adult|Experimental Factor: ORGANISM PART:head|Experimental Factor: SEX:male", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina Genome Analyzer II", null, "ERP000263", "Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation", "ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16", "3444_7.srf", "srf", 1384012896.0, 9105348.0, "E MTAB 308:Illumina Genome Analyzer II sequencing of adult Zebrafish male head dpf three prime pull down paired end 250 to 300 bp insert", "0:76 1:76", "A:369912216;C:306963547;G:292249178;T:392053840;N:22834115", 76, 76, null, null, 369912216, 306963547, 292249178, 392053840, 22834115, "ERX005930", "ERS000089", "ERA010603", "SC|Wellcome Trust Sanger Institute", "SC|Wellcome Trust Sanger Institute", 2, 0.95932, 0.96084, 0.20719, 0.21321, 0.73959, 0.74763, 0.47227, 0.48033, 76, 76, "B", "B", "biological fallback assumption", "illumina", "early_illumina", "3prime", "other", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2010-02-26", "Adult", "Adult", "Head", "Nervous System"], [9927, "ERR4321734", "ERX4268592", "ERS4808149", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl uni R 3", "SAMEA7047515", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047515|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni R 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni R 3|sampling site:right cerebral hemisphere|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:Ctrl uni R 3 p", "Ctrl uni R 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "Ctrl_uni_R_3_1.txt Ctrl_uni_R_3_2.txt", "fastq fastq", 7001062560.0, 43756641.0, "E MTAB 9321:Ctrl uni R 3 ", "0:80 1:80", "A:1691997382;C:1785031961;G:1794429141;T:1728559618;N:1044458", 80, 80, null, null, 1691997382, 1785031961, 1794429141, 1728559618, 1044458, "ERX4268592", "ERS4808149", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93339, 0.93586, 0.30761, 0.30942, 0.77031, 0.77285, 0.6535, 0.63203, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9928, "ERR4321733", "ERX4268591", "ERS4808148", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl uni R 2", "SAMEA7047514", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047514|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni R 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni R 2|sampling site:right cerebral hemisphere|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:Ctrl uni R 2 p", "Ctrl uni R 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "Ctrl_uni_R_2_1.txt Ctrl_uni_R_2_2.txt", "fastq fastq", 6922683200.0, 43266770.0, "E MTAB 9321:Ctrl uni R 2 ", "0:80 1:80", "A:1632897692;C:1799983634;G:1813073970;T:1675697152;N:1030752", 80, 80, null, null, 1632897692, 1799983634, 1813073970, 1675697152, 1030752, "ERX4268591", "ERS4808148", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.9343, 0.93678, 0.30732, 0.30767, 0.77226, 0.77496, 0.67322, 0.638, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9929, "ERR4321732", "ERX4268590", "ERS4808147", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl uni R 1", "SAMEA7047513", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047513|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni R 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni R 1|sampling site:right cerebral hemisphere|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:Ctrl uni R 1 p", "Ctrl uni R 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "Ctrl_uni_R_1_1.txt Ctrl_uni_R_1_2.txt", "fastq fastq", 7277767680.0, 45486048.0, "E MTAB 9321:Ctrl uni R 1 ", "0:80 1:80", "A:1716271935;C:1890805720;G:1910764817;T:1758823538;N:1101670", 80, 80, null, null, 1716271935, 1890805720, 1910764817, 1758823538, 1101670, "ERX4268590", "ERS4808147", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93132, 0.93607, 0.29495, 0.29694, 0.77916, 0.78023, 0.66985, 0.69546, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9930, "ERR4321731", "ERX4268589", "ERS4808146", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl uni L 3", "SAMEA7047512", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047512|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni L 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni L 3|sampling site:left cerebral hemisphere|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:Ctrl uni L 3 p", "Ctrl uni L 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "Ctrl_uni_L_3_1.txt Ctrl_uni_L_3_2.txt", "fastq fastq", 6575179520.0, 41094872.0, "E MTAB 9321:Ctrl uni L 3 ", "0:80 1:80", "A:1482672127;C:1776068618;G:1790187841;T:1525260758;N:990176", 80, 80, null, null, 1482672127, 1776068618, 1790187841, 1525260758, 990176, "ERX4268589", "ERS4808146", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.94459, 0.94749, 0.2565, 0.25972, 0.77816, 0.77881, 0.67376, 0.6469, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9931, "ERR4321730", "ERX4268588", "ERS4808145", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl uni L 2", "SAMEA7047511", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047511|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni L 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni L 2|sampling site:left cerebral hemisphere|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:Ctrl uni L 2 p", "Ctrl uni L 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "Ctrl_uni_L_2_1.txt Ctrl_uni_L_2_2.txt", "fastq fastq", 7275818080.0, 45473863.0, "E MTAB 9321:Ctrl uni L 2 ", "0:80 1:80", "A:1706173762;C:1899925486;G:1918514584;T:1750098284;N:1105964", 80, 80, null, null, 1706173762, 1899925486, 1918514584, 1750098284, 1105964, "ERX4268588", "ERS4808145", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93448, 0.93897, 0.29227, 0.29368, 0.77299, 0.77587, 0.67483, 0.69924, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9932, "ERR4321729", "ERX4268587", "ERS4808144", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl uni L 1", "SAMEA7047510", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047510|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni L 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni L 1|sampling site:left cerebral hemisphere|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:Ctrl uni L 1 p", "Ctrl uni L 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "Ctrl_uni_L_1_1.txt Ctrl_uni_L_1_2.txt", "fastq fastq", 6259547520.0, 39122172.0, "E MTAB 9321:Ctrl uni L 1 ", "0:80 1:80", "A:1504594075;C:1603950703;G:1614410199;T:1535635583;N:956960", 80, 80, null, null, 1504594075, 1603950703, 1614410199, 1535635583, 956960, "ERX4268587", "ERS4808144", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92994, 0.93276, 0.31313, 0.31395, 0.77195, 0.77372, 0.66568, 0.6882, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9933, "ERR4321728", "ERX4268586", "ERS4808143", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl uni 3", "SAMEA7047509", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047509|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl uni 3 p", "3dpl uni 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_uni_3_1.txt 3dpl_uni_3_2.txt", "fastq fastq", 7967977760.0, 49799861.0, "E MTAB 9321:3dpl uni 3 ", "0:80 1:80", "A:2260216672;C:1639328793;G:1824529883;T:2241676126;N:2226286", 80, 80, null, null, 2260216672, 1639328793, 1824529883, 2241676126, 2226286, "ERX4268586", "ERS4808143", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90526, 0.90173, 0.44801, 0.44169, 0.73827, 0.74854, 0.51874, 0.52672, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9934, "ERR4321727", "ERX4268585", "ERS4808142", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl uni 2", "SAMEA7047508", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047508|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl uni 2 p", "3dpl uni 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_uni_2_1.txt 3dpl_uni_2_2.txt", "fastq fastq", 9215409600.0, 57596310.0, "E MTAB 9321:3dpl uni 2 ", "0:80 1:80", "A:2620502481;C:1914345031;G:2080364714;T:2597606056;N:2591318", 80, 80, null, null, 2620502481, 1914345031, 2080364714, 2597606056, 2591318, "ERX4268585", "ERS4808142", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91412, 0.91102, 0.42824, 0.4207, 0.73091, 0.73671, 0.52094, 0.52307, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9935, "ERR4321726", "ERX4268584", "ERS4808141", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl uni 1", "SAMEA7047507", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047507|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl uni 1 p", "3dpl uni 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_uni_1_1.txt 3dpl_uni_1_2.txt", "fastq fastq", 9713477280.0, 60709233.0, "E MTAB 9321:3dpl uni 1 ", "0:80 1:80", "A:2666518127;C:1984727973;G:2436235221;T:2623269258;N:2726701", 80, 80, null, null, 2666518127, 1984727973, 2436235221, 2623269258, 2726701, "ERX4268584", "ERS4808141", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91468, 0.89921, 0.41764, 0.40764, 0.73403, 0.74608, 0.52391, 0.52748, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9936, "ERR4321725", "ERX4268583", "ERS4808140", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl uni 3", "SAMEA7047506", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047506|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl uni 3 p", "20hpl uni 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_uni_3_1.txt 20hpl_uni_3_2.txt", "fastq fastq", 8675853280.0, 54224083.0, "E MTAB 9321:20hpl uni 3 ", "0:80 1:80", "A:2365631089;C:1890091876;G:2067595442;T:2325000100;N:27534773", 80, 80, null, null, 2365631089, 1890091876, 2067595442, 2325000100, 27534773, "ERX4268583", "ERS4808140", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90101, 0.90675, 0.42722, 0.4249, 0.74337, 0.75294, 0.51417, 0.52085, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9937, "ERR4321724", "ERX4268582", "ERS4808139", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl uni 2", "SAMEA7047505", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047505|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl uni 2 p", "20hpl uni 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_uni_2_1.txt 20hpl_uni_2_2.txt", "fastq fastq", 4735091040.0, 29594319.0, "E MTAB 9321:20hpl uni 2 ", "0:80 1:80", "A:1061979324;C:1276598224;G:1297035795;T:1098757554;N:720143", 80, 80, null, null, 1061979324, 1276598224, 1297035795, 1098757554, 720143, "ERX4268582", "ERS4808139", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.9384, 0.94067, 0.25644, 0.25853, 0.7877, 0.78843, 0.69474, 0.72221, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9938, "ERR4321723", "ERX4268581", "ERS4808138", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl uni 1", "SAMEA7047504", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047504|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl uni 1 p", "20hpl uni 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_uni_1_1.txt 20hpl_uni_1_2.txt", "fastq fastq", 10122915040.0, 63268219.0, "E MTAB 9321:20hpl uni 1 ", "0:80 1:80", "A:2917523358;C:2094720604;G:2205586268;T:2872641443;N:32443367", 80, 80, null, null, 2917523358, 2094720604, 2205586268, 2872641443, 32443367, "ERX4268581", "ERS4808138", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90867, 0.91132, 0.46283, 0.46241, 0.74858, 0.75357, 0.53145, 0.53522, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9939, "ERR4321722", "ERX4268580", "ERS4808137", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in IWR 3", "SAMEA7047503", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047503|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in IWR 3 p", "3dpl in IWR 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_IWR_3_1.txt 3dpl_in_IWR_3_2.txt", "fastq fastq", 9476807840.0, 59230049.0, "E MTAB 9321:3dpl in IWR 3 ", "0:80 1:80", "A:2639849526;C:1994343199;G:2238787041;T:2601193111;N:2634963", 80, 80, null, null, 2639849526, 1994343199, 2238787041, 2601193111, 2634963, "ERX4268580", "ERS4808137", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91666, 0.90016, 0.41957, 0.41098, 0.72679, 0.73596, 0.52875, 0.53529, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9940, "ERR4321721", "ERX4268579", "ERS4808136", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in IWR 2", "SAMEA7047502", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047502|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in IWR 2 p", "3dpl in IWR 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_IWR_2_1.txt 3dpl_in_IWR_2_2.txt", "fastq fastq", 7305898240.0, 45661864.0, "E MTAB 9321:3dpl in IWR 2 ", "0:80 1:80", "A:2035812198;C:1535985603;G:1714961805;T:2017139933;N:1998701", 80, 80, null, null, 2035812198, 1535985603, 1714961805, 2017139933, 1998701, "ERX4268579", "ERS4808136", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91721, 0.90787, 0.40247, 0.39455, 0.72916, 0.74097, 0.52622, 0.52732, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9941, "ERR4321720", "ERX4268578", "ERS4808135", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in IWR 1", "SAMEA7047501", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047501|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in IWR 1 p", "3dpl in IWR 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_IWR_1_1.txt 3dpl_in_IWR_1_2.txt", "fastq fastq", 5893946400.0, 36837165.0, "E MTAB 9321:3dpl in IWR 1 ", "0:80 1:80", "A:1170533263;C:1737932152;G:1758304403;T:1226290662;N:885920", 80, 80, null, null, 1170533263, 1737932152, 1758304403, 1226290662, 885920, "ERX4268578", "ERS4808135", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.95436, 0.95726, 0.17474, 0.17743, 0.77031, 0.7726, 0.72793, 0.73265, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9942, "ERR4321719", "ERX4268577", "ERS4808134", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in IWR 3", "SAMEA7047500", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047500|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in IWR 3 p", "20hpl in IWR 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_IWR_3_1.txt 20hpl_in_IWR_3_2.txt", "fastq fastq", 6198105920.0, 38738162.0, "E MTAB 9321:20hpl in IWR 3 ", "0:80 1:80", "A:1441128066;C:1626141975;G:1647720111;T:1482170340;N:945428", 80, 80, null, null, 1441128066, 1626141975, 1647720111, 1482170340, 945428, "ERX4268577", "ERS4808134", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.94334, 0.94604, 0.2532, 0.25458, 0.75941, 0.76086, 0.66584, 0.67193, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9943, "ERR4321718", "ERX4268576", "ERS4808133", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in IWR 2", "SAMEA7047499", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047499|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in IWR 2 p", "20hpl in IWR 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_IWR_2_1.txt 20hpl_in_IWR_2_2.txt", "fastq fastq", 8244868480.0, 51530428.0, "E MTAB 9321:20hpl in IWR 2 ", "0:80 1:80", "A:2326026663;C:1706321438;G:1913900194;T:2272224793;N:26395392", 80, 80, null, null, 2326026663, 1706321438, 1913900194, 2272224793, 26395392, "ERX4268576", "ERS4808133", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91275, 0.90955, 0.44535, 0.44255, 0.74456, 0.75298, 0.53931, 0.53823, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9944, "ERR4321717", "ERX4268575", "ERS4808132", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in IWR 1", "SAMEA7047498", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047498|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in IWR 1 p", "20hpl in IWR 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_IWR_1_1.txt 20hpl_in_IWR_1_2.txt", "fastq fastq", 8946910240.0, 55918189.0, "E MTAB 9321:20hpl in IWR 1 ", "0:80 1:80", "A:2523280880;C:1876368998;G:2029673577;T:2489111763;N:28475022", 80, 80, null, null, 2523280880, 1876368998, 2029673577, 2489111763, 28475022, "ERX4268575", "ERS4808132", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91067, 0.90286, 0.45601, 0.44987, 0.7335, 0.74119, 0.51443, 0.51662, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9945, "ERR4321716", "ERX4268574", "ERS4808131", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in 3", "SAMEA7047497", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047497|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in 3 p", "3dpl in 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_3_1.txt 3dpl_in_3_2.txt", "fastq fastq", 9556572640.0, 59728579.0, "E MTAB 9321:3dpl in 3 ", "0:80 1:80", "A:2669191918;C:1902750470;G:2361798477;T:2620161228;N:2670547", 80, 80, null, null, 2669191918, 1902750470, 2361798477, 2620161228, 2670547, "ERX4268574", "ERS4808131", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91175, 0.89329, 0.42236, 0.413, 0.72671, 0.74156, 0.52222, 0.52828, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9946, "ERR4321715", "ERX4268573", "ERS4808130", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in 2", "SAMEA7047496", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047496|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in 2 p", "3dpl in 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_2_1.txt 3dpl_in_2_2.txt", "fastq fastq", 10848117120.0, 67800732.0, "E MTAB 9321:3dpl in 2 ", "0:80 1:80", "A:2935795866;C:2381506213;G:2652994352;T:2874780262;N:3040427", 80, 80, null, null, 2935795866, 2381506213, 2652994352, 2874780262, 3040427, "ERX4268573", "ERS4808130", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91965, 0.89867, 0.42158, 0.41268, 0.73342, 0.74249, 0.56938, 0.56978, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9947, "ERR4321714", "ERX4268572", "ERS4808129", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in 1", "SAMEA7047495", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047495|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in 1 p", "3dpl in 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_1_1.txt 3dpl_in_1_2.txt", "fastq fastq", 12371488960.0, 77321806.0, "E MTAB 9321:3dpl in 1 ", "0:80 1:80", "A:3438091571;C:2664088451;G:2872543859;T:3393310483;N:3454596", 80, 80, null, null, 3438091571, 2664088451, 2872543859, 3393310483, 3454596, "ERX4268572", "ERS4808129", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92096, 0.90884, 0.39682, 0.3843, 0.72614, 0.73401, 0.53892, 0.53838, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9948, "ERR4321713", "ERX4268571", "ERS4808128", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in 3", "SAMEA7047494", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047494|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in 3 p", "20hpl in 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_3_1.txt 20hpl_in_3_2.txt", "fastq fastq", 10464739040.0, 65404619.0, "E MTAB 9321:20hpl in 3 ", "0:80 1:80", "A:2995469080;C:2169447356;G:2318878018;T:2947444090;N:33500496", 80, 80, null, null, 2995469080, 2169447356, 2318878018, 2947444090, 33500496, "ERX4268571", "ERS4808128", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.9098, 0.91109, 0.46632, 0.4653, 0.74276, 0.75077, 0.51527, 0.52148, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9949, "ERR4321712", "ERX4268570", "ERS4808127", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in 2", "SAMEA7047493", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047493|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in 2 p", "20hpl in 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_2_1.txt 20hpl_in_2_2.txt", "fastq fastq", 8520377280.0, 53252358.0, "E MTAB 9321:20hpl in 2 ", "0:80 1:80", "A:2416849489;C:1735946163;G:1978475279;T:2361749789;N:27356560", 80, 80, null, null, 2416849489, 1735946163, 1978475279, 2361749789, 27356560, "ERX4268570", "ERS4808127", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91434, 0.91, 0.42899, 0.42662, 0.73917, 0.74876, 0.52201, 0.51826, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9950, "ERR4321711", "ERX4268569", "ERS4808126", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in 1", "SAMEA7047492", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047492|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in 1 p", "20hpl in 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_1_1.txt 20hpl_in_1_2.txt", "fastq fastq", 7150452800.0, 44690330.0, "E MTAB 9321:20hpl in 1 ", "0:80 1:80", "A:1771803292;C:1779551247;G:1798541378;T:1799460160;N:1096723", 80, 80, null, null, 1771803292, 1779551247, 1798541378, 1799460160, 1096723, "ERX4268569", "ERS4808126", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92622, 0.93038, 0.35018, 0.35291, 0.7727, 0.77396, 0.64402, 0.65297, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [10324, "ERR7384926", "ERX6953430", "ERS8736631", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 5", "SAMEA11086968", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086968|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 5|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 5|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 5 p", "Ctrl 5 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-5_1.fastq.gz Ctrl-5_2.fastq.gz", "fastq fastq", 7836077760.0, 48975486.0, "E MTAB 11163:Ctrl 5 ", "0:80 1:80", "A:2197807782;C:1719033269;G:1762364798;T:2156195280;N:676631", 80, 80, null, null, 2197807782, 1719033269, 1762364798, 2156195280, 676631, "ERX6953430", "ERS8736631", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93458, 0.93849, 0.19317, 0.18598, 0.72855, 0.72784, 0.48113, 0.4814, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10325, "ERR7384925", "ERX6953429", "ERS8736630", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 4", "SAMEA11086967", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086967|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 4 p", "Ctrl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-4_1.fastq.gz Ctrl-4_2.fastq.gz", "fastq fastq", 11841052800.0, 74006580.0, "E MTAB 11163:Ctrl 4 ", "0:80 1:80", "A:3269511229;C:2469072822;G:2920921930;T:3177156542;N:4390277", 80, 80, null, null, 3269511229, 2469072822, 2920921930, 3177156542, 4390277, "ERX6953429", "ERS8736630", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86759, 0.86792, 0.43044, 0.42689, 0.75469, 0.76717, 0.55291, 0.55788, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10326, "ERR7384924", "ERX6953428", "ERS8736629", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 3", "SAMEA11086966", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086966|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 3 p", "Ctrl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-3_1.fastq.gz Ctrl-3_2.fastq.gz", "fastq fastq", 14286470240.0, 89290439.0, "E MTAB 11163:Ctrl 3 ", "0:80 1:80", "A:3956940377;C:3071545407;G:3372465520;T:3880155204;N:5363732", 80, 80, null, null, 3956940377, 3071545407, 3372465520, 3880155204, 5363732, "ERX6953428", "ERS8736629", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.87493, 0.87449, 0.43889, 0.44065, 0.7541, 0.76402, 0.5369, 0.53575, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10327, "ERR7384923", "ERX6953427", "ERS8736628", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 2", "SAMEA11086965", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086965|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 2 p", "Ctrl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-2_1.fastq.gz Ctrl-2_2.fastq.gz", "fastq fastq", 13169862240.0, 82311639.0, "E MTAB 11163:Ctrl 2 ", "0:80 1:80", "A:3683560119;C:2823399426;G:3030116974;T:3627855699;N:4930022", 80, 80, null, null, 3683560119, 2823399426, 3030116974, 3627855699, 4930022, "ERX6953427", "ERS8736628", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86757, 0.87095, 0.44548, 0.45008, 0.75536, 0.76343, 0.53366, 0.54558, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10328, "ERR7384922", "ERX6953426", "ERS8736627", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 1", "SAMEA11086964", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086964|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 1 p", "Ctrl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-1_1.fastq.gz Ctrl-1_2.fastq.gz", "fastq fastq", 11349398560.0, 70933741.0, "E MTAB 11163:Ctrl 1 ", "0:80 1:80", "A:3132234873;C:2275439795;G:2903048149;T:3034427880;N:4247863", 80, 80, null, null, 3132234873, 2275439795, 2903048149, 3034427880, 4247863, "ERX6953426", "ERS8736627", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86563, 0.85769, 0.45807, 0.45717, 0.75542, 0.76999, 0.53285, 0.52788, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10329, "ERR7384921", "ERX6953425", "ERS8736626", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 4", "SAMEA11086962", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086962|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 4 p", "3dpl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-4_1.fastq.gz 3dpl-4_2.fastq.gz", "fastq fastq", 12269133600.0, 76682085.0, "E MTAB 11163:3dpl 4 ", "0:80 1:80", "A:3308670822;C:2612099729;G:3097254260;T:3246547111;N:4561678", 80, 80, null, null, 3308670822, 2612099729, 3097254260, 3246547111, 4561678, "ERX6953425", "ERS8736626", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.88949, 0.88423, 0.41382, 0.41463, 0.73856, 0.75209, 0.54087, 0.53814, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10330, "ERR7384920", "ERX6953424", "ERS8736625", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 3", "SAMEA11086961", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086961|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 3 p", "3dpl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-3_1.fastq.gz 3dpl-3_2.fastq.gz", "fastq fastq", 12561832800.0, 78511455.0, "E MTAB 11163:3dpl 3 ", "0:80 1:80", "A:3518655485;C:2691495460;G:2879365772;T:3467606057;N:4710026", 80, 80, null, null, 3518655485, 2691495460, 2879365772, 3467606057, 4710026, "ERX6953424", "ERS8736625", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86128, 0.86324, 0.43991, 0.44309, 0.73998, 0.74761, 0.5283, 0.52762, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10331, "ERR7384919", "ERX6953423", "ERS8736624", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 2", "SAMEA11086960", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086960|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 2 p", "3dpl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-2_1.fastq.gz 3dpl-2_2.fastq.gz", "fastq fastq", 12727937600.0, 79549610.0, "E MTAB 11163:3dpl 2 ", "0:80 1:80", "A:3511550580;C:2718113416;G:3063150762;T:3430381211;N:4741631", 80, 80, null, null, 3511550580, 2718113416, 3063150762, 3430381211, 4741631, "ERX6953423", "ERS8736624", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.88126, 0.88294, 0.42008, 0.41964, 0.72687, 0.73811, 0.52924, 0.52812, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10332, "ERR7384918", "ERX6953422", "ERS8736623", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 1", "SAMEA11086959", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086959|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 1 p", "3dpl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-1_1.fastq.gz 3dpl-1_2.fastq.gz", "fastq fastq", 10910301440.0, 68189384.0, "E MTAB 11163:3dpl 1 ", "0:80 1:80", "A:2970902938;C:2403780256;G:2602413517;T:2929186974;N:4017755", 80, 80, null, null, 2970902938, 2403780256, 2602413517, 2929186974, 4017755, "ERX6953422", "ERS8736623", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.84003, 0.84172, 0.34597, 0.34824, 0.71589, 0.72466, 0.52558, 0.52286, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10333, "ERR7384917", "ERX6953421", "ERS8736622", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 5", "SAMEA11086958", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086958|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 5|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 5|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 5 p", "1dpl 5 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-5_1.fastq.gz 1dpl-5_2.fastq.gz", "fastq fastq", 10425544320.0, 65159652.0, "E MTAB 11163:1dpl 5 ", "0:80 1:80", "A:3050099743;C:2153241581;G:2229178430;T:2992123587;N:900979", 80, 80, null, null, 3050099743, 2153241581, 2229178430, 2992123587, 900979, "ERX6953421", "ERS8736622", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92853, 0.93189, 0.23718, 0.23074, 0.72366, 0.72052, 0.49924, 0.511, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10334, "ERR7384916", "ERX6953420", "ERS8736621", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 4", "SAMEA11086957", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086957|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 4 p", "1dpl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-4_1.fastq.gz 1dpl-4_2.fastq.gz", "fastq fastq", 9244695360.0, 57779346.0, "E MTAB 11163:1dpl 4 ", "0:80 1:80", "A:2617398368;C:2006695457;G:2057821797;T:2561969157;N:810581", 80, 80, null, null, 2617398368, 2006695457, 2057821797, 2561969157, 810581, "ERX6953420", "ERS8736621", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93687, 0.94089, 0.20045, 0.19324, 0.71674, 0.71506, 0.49841, 0.50035, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10335, "ERR7384915", "ERX6953419", "ERS8736620", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 3", "SAMEA11086956", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086956|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 3 p", "1dpl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-3_1.fastq.gz 1dpl-3_2.fastq.gz", "fastq fastq", 9373333280.0, 58583333.0, "E MTAB 11163:1dpl 3 ", "0:80 1:80", "A:2671556387;C:2008711931;G:2062635156;T:2629594613;N:835193", 80, 80, null, null, 2671556387, 2008711931, 2062635156, 2629594613, 835193, "ERX6953419", "ERS8736620", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93438, 0.93842, 0.21075, 0.20463, 0.71459, 0.71246, 0.50094, 0.50105, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10336, "ERR7384914", "ERX6953418", "ERS8736619", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 2", "SAMEA11086955", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086955|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 2 p", "1dpl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-2_1.fastq.gz 1dpl-2_2.fastq.gz", "fastq fastq", 9647031680.0, 60293948.0, "E MTAB 11163:1dpl 2 ", "0:80 1:80", "A:2807310022;C:2016751282;G:2080246249;T:2741889329;N:834798", 80, 80, null, null, 2807310022, 2016751282, 2080246249, 2741889329, 834798, "ERX6953418", "ERS8736619", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92564, 0.92819, 0.22329, 0.21583, 0.72028, 0.71877, 0.50128, 0.50045, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10337, "ERR7384913", "ERX6953417", "ERS8736618", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 1", "SAMEA11086954", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086954|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 1 p", "1dpl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-1_1.fastq.gz 1dpl-1_2.fastq.gz", "fastq fastq", 10054666560.0, 62841666.0, "E MTAB 11163:1dpl 1 ", "0:80 1:80", "A:2921800431;C:2104003276;G:2166908855;T:2861086535;N:867463", 80, 80, null, null, 2921800431, 2104003276, 2166908855, 2861086535, 867463, "ERX6953417", "ERS8736618", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93251, 0.9361, 0.22525, 0.21776, 0.71806, 0.71478, 0.5039, 0.50925, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10338, "ERR7384912", "ERX6953416", "ERS8736617", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 4", "SAMEA11086953", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086953|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 4 p", "14dpl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-4_1.fastq.gz 14dpl-4_2.fastq.gz", "fastq fastq", 10510375520.0, 65689847.0, "E MTAB 11163:14dpl 4 ", "0:80 1:80", "A:2894001008;C:2230656231;G:2530263174;T:2852841235;N:2613872", 80, 80, null, null, 2894001008, 2230656231, 2530263174, 2852841235, 2613872, "ERX6953416", "ERS8736617", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.8951, 0.89119, 0.46407, 0.46205, 0.74349, 0.75043, 0.52432, 0.52127, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10339, "ERR7384911", "ERX6953415", "ERS8736616", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 3", "SAMEA11086952", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086952|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 3 p", "14dpl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-3_1.fastq.gz 14dpl-3_2.fastq.gz", "fastq fastq", 12643445600.0, 79021535.0, "E MTAB 11163:14dpl 3 ", "0:80 1:80", "A:3542554562;C:2679505652;G:2918520292;T:3499712681;N:3152413", 80, 80, null, null, 3542554562, 2679505652, 2918520292, 3499712681, 3152413, "ERX6953415", "ERS8736616", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90044, 0.9018, 0.4852, 0.48223, 0.75022, 0.7557, 0.52769, 0.50719, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10340, "ERR7384910", "ERX6953414", "ERS8736615", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 2", "SAMEA11086951", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086951|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 2 p", "14dpl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-2_1.fastq.gz 14dpl-2_2.fastq.gz", "fastq fastq", 23194452640.0, 144965329.0, "E MTAB 11163:14dpl 2 ", "0:80 1:80", "A:6438735597;C:4960360012;G:5452621343;T:6336943660;N:5792028", 80, 80, null, null, 6438735597, 4960360012, 5452621343, 6336943660, 5792028, "ERX6953414", "ERS8736615", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90763, 0.89955, 0.47238, 0.46518, 0.7446, 0.75544, 0.5513, 0.5514, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10341, "ERR7384909", "ERX6953413", "ERS8736614", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 1", "SAMEA11086950", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086950|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 1 p", "14dpl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-1_1.fastq.gz 14dpl-1_2.fastq.gz", "fastq fastq", 9754805920.0, 60967537.0, "E MTAB 11163:14dpl 1 ", "0:80 1:80", "A:2682345750;C:2040914324;G:2394726385;T:2634385060;N:2434401", 80, 80, null, null, 2682345750, 2040914324, 2394726385, 2634385060, 2434401, "ERX6953413", "ERS8736614", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.89908, 0.89179, 0.47056, 0.46838, 0.74231, 0.7543, 0.52672, 0.52558, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [67053, "SRR17026704", "SRX13216734", "SRS11142397", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "I", "C KO", "CK3", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 9|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CK3", "CK3", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CK3_R1.fastq.gz CK3_R2.fastq.gz", "fastq fastq", 7416029478.0, 24556389.0, "CK3 R1.fastq.gz", "0:151 1:151", "A:2009338296;C:1698532048;G:1730113268;T:1978028729;N:17137", 151, 151, null, null, 2009338296, 1698532048, 1730113268, 1978028729, 17137, "SRX13216734", "SRS11142397", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.9353, 0.93623, 0.08453, 0.08527, 0.71551, 0.71618, 0.49695, 0.49568, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67054, "SRR17026705", "SRX13216733", "SRS11142398", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "H", "C KO", "CK2", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 8|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CK2", "CK2", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CK2_R1.fastq.gz CK2_R2.fastq.gz", "fastq fastq", 7590854258.0, 25135279.0, "CK2 R1.fastq.gz", "0:151 1:151", "A:2041517653;C:1754766573;G:1784738177;T:2009814138;N:17717", 151, 151, null, null, 2041517653, 1754766573, 1784738177, 2009814138, 17717, "SRX13216733", "SRS11142398", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.93771, 0.93725, 0.07877, 0.07858, 0.71739, 0.71747, 0.49923, 0.49556, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67055, "SRR17026706", "SRX13216732", "SRS11142395", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "G", "C KO", "CK1", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CK1", "CK1", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CK1_R1.fastq.gz CK1_R2.fastq.gz", "fastq fastq", 6970012926.0, 23079513.0, "CK1 R1.fastq.gz", "0:151 1:151", "A:1881234941;C:1605828944;G:1630994283;T:1851938444;N:16314", 151, 151, null, null, 1881234941, 1605828944, 1630994283, 1851938444, 16314, "SRX13216732", "SRS11142395", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.93953, 0.93921, 0.07632, 0.07583, 0.71853, 0.71859, 0.49982, 0.50306, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67056, "SRR17026707", "SRX13216731", "SRS11142393", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "F", "C Male", "CM3", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CM3", "CM3", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CM3_R1.fastq.gz CM3_R2.fastq.gz", "fastq fastq", 6554074064.0, 21702232.0, "CM3 R1.fastq.gz", "0:151 1:151", "A:1751561620;C:1527225291;G:1555097615;T:1720174098;N:15440", 151, 151, null, null, 1751561620, 1527225291, 1555097615, 1720174098, 15440, "SRX13216731", "SRS11142393", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.94488, 0.9451, 0.06843, 0.0681, 0.72829, 0.72817, 0.50055, 0.5012, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67057, "SRR17026708", "SRX13216730", "SRS11142392", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "E", "C Male", "CM2", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CM2", "CM2", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CM2_R1.fastq.gz CM2_R2.fastq.gz", "fastq fastq", 6775620962.0, 22435831.0, "CM2 R1.fastq.gz", "0:151 1:151", "A:1822502937;C:1567415362;G:1594060885;T:1791625779;N:15999", 151, 151, null, null, 1822502937, 1567415362, 1594060885, 1791625779, 15999, "SRX13216730", "SRS11142392", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.94019, 0.94062, 0.07513, 0.0751, 0.71847, 0.71922, 0.4841, 0.49018, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67058, "SRR17026709", "SRX13216729", "SRS11142394", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "D", "C Male", "CM1", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CM1", "CM1", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CM1_R1.fastq.gz CM1_R2.fastq.gz", "fastq fastq", 7547878148.0, 24992974.0, "CM1 R1.fastq.gz", "0:151 1:151", "A:2049794521;C:1727106839;G:1752167931;T:2018790733;N:18124", 151, 151, null, null, 2049794521, 1727106839, 1752167931, 2018790733, 18124, "SRX13216729", "SRS11142394", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.93694, 0.9365, 0.08422, 0.08378, 0.71658, 0.71654, 0.49676, 0.4978, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67059, "SRR17026710", "SRX13216728", "SRS11142390", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "C", "C Female", "CF3", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CF3", "CF3", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CF3_R1.fastq.gz CF3_R2.fastq.gz", "fastq fastq", 6471047922.0, 21427311.0, "CF3 R1.fastq.gz", "0:151 1:151", "A:1715522671;C:1521915743;G:1546665820;T:1686928589;N:15099", 151, 151, null, null, 1715522671, 1521915743, 1546665820, 1686928589, 15099, "SRX13216728", "SRS11142390", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.94618, 0.94583, 0.05607, 0.05556, 0.73184, 0.73158, 0.5025, 0.50567, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67060, "SRR17026711", "SRX13216727", "SRS11142391", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "B", "C Female", "CF2", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CF2", "CF2", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CF2_R1.fastq.gz CF2_R2.fastq.gz", "fastq fastq", 7818271432.0, 25888316.0, "CF2 R1.fastq.gz", "0:151 1:151", "A:2101158671;C:1810803776;G:1839717812;T:2066573107;N:18066", 151, 151, null, null, 2101158671, 1810803776, 1839717812, 2066573107, 18066, "SRX13216727", "SRS11142391", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.93945, 0.93943, 0.06978, 0.06927, 0.72034, 0.71932, 0.49266, 0.48929, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67061, "SRR17026712", "SRX13216726", "SRS11142389", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "A", "C Female", "CF1", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CF1", "CF1", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CF1_R2.fastq.gz CF1_R1.fastq.gz", "fastq fastq", 7448526188.0, 24663994.0, "CF1 R1.fastq.gz", "0:151 1:151", "A:1995220552;C:1730768595;G:1757104436;T:1965415170;N:17435", 151, 151, null, null, 1995220552, 1730768595, 1757104436, 1965415170, 17435, "SRX13216726", "SRS11142389", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.9424, 0.94214, 0.07069, 0.07015, 0.71934, 0.72019, 0.49122, 0.49476, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [70382, "SRR19762944", "SRX15807635", "SRS13499606", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "ZF Ko H5 EW20", "GSM6256878", null, "source name:cpsf6 /  6dpf head|tissue:head|genotype:cpsf6 / |treatment:N1", "ZF Ko H5 EW20", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "cpsf6 /  6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:cpsf6 / |treatment:N1", "GSM6256878", "GSM6256878: ZF Ko H5 EW20; Danio rerio; OTHER", "GSM6256878 r1", "GSM6256878", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "ZF_Ko_H5_EW20_R1.fastq.gz", "fastq", 3464837420.0, 28635020.0, "GSM6256878 r1", "0:121", "A:1494034798;C:622079032;G:645639126;T:703047177;N:37287", 121, null, null, null, 1494034798, 622079032, 645639126, 703047177, 37287, "SRX15807635", "SRS13499606", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.47903, null, 0.15095, null, 0.82883, null, 0.6863, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70383, "SRR19762945", "SRX15807634", "SRS13499605", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "ZF Ko H4 EW19", "GSM6256877", null, "source name:cpsf6 /  6dpf head|tissue:head|genotype:cpsf6 / |treatment:N1", "ZF Ko H4 EW19", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "cpsf6 /  6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:cpsf6 / |treatment:N1", "GSM6256877", "GSM6256877: ZF Ko H4 EW19; Danio rerio; OTHER", "GSM6256877 r1", "GSM6256877", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "ZF_Ko_H4_EW19_R1.fastq.gz", "fastq", 3251893150.0, 26875150.0, "GSM6256877 r1", "0:121", "A:1344795862;C:598411565;G:620697978;T:687947810;N:39935", 121, null, null, null, 1344795862, 598411565, 620697978, 687947810, 39935, "SRX15807634", "SRS13499605", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.50383, null, 0.16013, null, 0.82217, null, 0.6919, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70384, "SRR19762946", "SRX15807633", "SRS13499604", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "ZF Ko H3 EW18", "GSM6256876", null, "source name:cpsf6 /  6dpf head|tissue:head|genotype:cpsf6 / |treatment:N1", "ZF Ko H3 EW18", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "cpsf6 /  6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:cpsf6 / |treatment:N1", "GSM6256876", "GSM6256876: ZF Ko H3 EW18; Danio rerio; OTHER", "GSM6256876 r1", "GSM6256876", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "ZF_Ko_H3_EW18_R1.fastq.gz", "fastq", 2614428850.0, 21606850.0, "GSM6256876 r1", "0:121", "A:1106782184;C:471490720;G:482307751;T:553818128;N:30067", 121, null, null, null, 1106782184, 471490720, 482307751, 553818128, 30067, "SRX15807633", "SRS13499604", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.49216, null, 0.17707, null, 0.824, null, 0.67519, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70385, "SRR19762947", "SRX15807632", "SRS13499603", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "ZF Ko H2 EW17", "GSM6256875", null, "source name:cpsf6 /  6dpf head|tissue:head|genotype:cpsf6 / |treatment:N1", "ZF Ko H2 EW17", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "cpsf6 /  6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:cpsf6 / |treatment:N1", "GSM6256875", "GSM6256875: ZF Ko H2 EW17; Danio rerio; OTHER", "GSM6256875 r1", "GSM6256875", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "ZF_Ko_H2_EW17_R1.fastq.gz", "fastq", 2829766984.0, 23386504.0, "GSM6256875 r1", "0:121", "A:1154124199;C:523756445;G:540103572;T:611750443;N:32325", 121, null, null, null, 1154124199, 523756445, 540103572, 611750443, 32325, "SRX15807632", "SRS13499603", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.53128, null, 0.17359, null, 0.81479, null, 0.67717, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70386, "SRR19762948", "SRX15807631", "SRS13499602", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "ZF Ko H1 EW16", "GSM6256874", null, "source name:cpsf6 /  6dpf head|tissue:head|genotype:cpsf6 / |treatment:N1", "ZF Ko H1 EW16", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "cpsf6 /  6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:cpsf6 / |treatment:N1", "GSM6256874", "GSM6256874: ZF Ko H1 EW16; Danio rerio; OTHER", "GSM6256874 r1", "GSM6256874", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "ZF_Ko_H1_EW16_R1.fastq.gz", "fastq", 3127010139.0, 25843059.0, "GSM6256874 r1", "0:121", "A:1303638776;C:565310993;G:598748714;T:659275918;N:35738", 121, null, null, null, 1303638776, 565310993, 598748714, 659275918, 35738, "SRX15807631", "SRS13499602", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.49184, null, 0.16601, null, 0.82201, null, 0.67657, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70387, "SRR19762949", "SRX15807630", "SRS13499601", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "Zf Wt H5 EW15", "GSM6256873", null, "source name:wild type 6dpf head|tissue:head|genotype:wild type|treatment:N1", "Zf Wt H5 EW15", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "wild type 6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:wild type|treatment:N1", "GSM6256873", "GSM6256873: Zf Wt H5 EW15; Danio rerio; OTHER", "GSM6256873 r1", "GSM6256873", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "Zf_Wt_H5_EW15_R1.fastq.gz", "fastq", 3020456208.0, 24962448.0, "GSM6256873 r1", "0:121", "A:1299290531;C:541614248;G:555748976;T:623766444;N:36009", 121, null, null, null, 1299290531, 541614248, 555748976, 623766444, 36009, "SRX15807630", "SRS13499601", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.50369, null, 0.18129, null, 0.83769, null, 0.67627, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70388, "SRR19762950", "SRX15807629", "SRS13499600", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "Zf Wt H4 EW14", "GSM6256872", null, "source name:wild type 6dpf head|tissue:head|genotype:wild type|treatment:N1", "Zf Wt H4 EW14", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "wild type 6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:wild type|treatment:N1", "GSM6256872", "GSM6256872: Zf Wt H4 EW14; Danio rerio; OTHER", "GSM6256872 r1", "GSM6256872", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "Zf_Wt_H4_EW14_R1.fastq.gz", "fastq", 2964716348.0, 24501788.0, "GSM6256872 r1", "0:121", "A:1296624390;C:527132924;G:548516138;T:592409475;N:33421", 121, null, null, null, 1296624390, 527132924, 548516138, 592409475, 33421, "SRX15807629", "SRS13499600", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.46081, null, 0.15564, null, 0.85048, null, 0.6808, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70389, "SRR19762951", "SRX15807628", "SRS13499598", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "Zf Wt H3 EW13", "GSM6256871", null, "source name:wild type 6dpf head|tissue:head|genotype:wild type|treatment:N1", "Zf Wt H3 EW13", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "wild type 6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:wild type|treatment:N1", "GSM6256871", "GSM6256871: Zf Wt H3 EW13; Danio rerio; OTHER", "GSM6256871 r1", "GSM6256871", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "Zf_Wt_H3_EW13_R1.fastq.gz", "fastq", 3442300565.0, 28448765.0, "GSM6256871 r1", "0:121", "A:1485526892;C:608224693;G:650560614;T:697949308;N:39058", 121, null, null, null, 1485526892, 608224693, 650560614, 697949308, 39058, "SRX15807628", "SRS13499598", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.47353, null, 0.1692, null, 0.84898, null, 0.67905, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70390, "SRR19762952", "SRX15807627", "SRS13499599", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "Zf Wt H2 EW12", "GSM6256870", null, "source name:wild type 6dpf head|tissue:head|genotype:wild type|treatment:N1", "Zf Wt H2 EW12", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "wild type 6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:wild type|treatment:N1", "GSM6256870", "GSM6256870: Zf Wt H2 EW12; Danio rerio; OTHER", "GSM6256870 r1", "GSM6256870", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "Zf_Wt_H2_EW12_R1.fastq.gz", "fastq", 2948425634.0, 24367154.0, "GSM6256870 r1", "0:121", "A:1211451419;C:546445066;G:560022243;T:630468316;N:38590", 121, null, null, null, 1211451419, 546445066, 560022243, 630468316, 38590, "SRX15807627", "SRS13499599", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.53462, null, 0.18347, null, 0.82309, null, 0.66989, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [70391, "SRR19762953", "SRX15807626", "SRS13499597", "SRP382883", "PRJNA851381", "Loss of CPSF6 causes developmental disease via bimodal changes in polyadenylation site usage and protein expression [Zebrafish]", "GSE206558", "Other", "Most pre messenger RNA pre mRNA undergo extensive processing to create distinct transcripts from the same gene. One of these processes  alternative polyadenylation  involves over twenty proteins to bind and cleave the pre mRNA at polyA sites that can lie within the three prime UTR  introns  or exons; this can modulate protein function  but the effect of choosing a site internal to the gene vs. within the three prime UTR remains unclear. Here we show that reduced expression of CPSF6  one of the proteins involved in site selection  derails development in both humans and zebrafish by causing a bidirectional shift in polyA site usage. CPSF6 insufficiency favors the use of intronic polyA sites in neuronal genes  reducing mRNA and protein abundance  but promotes three prime UTR site usage in cardiovascular and skeletal genes  upregulating mRNA and protein.These data thus provides a long sought link between APA and gene expression and shows that polyA site selection influences development.  Overall design: Comparative analysis of alternative polyadenylation using polyA click seq PAC seq on whole larva and head of cpsf6 /  Danio rerio compared to stage matched wt controls.", "parent bioproject:PRJNA851372", "pubmed:36800428", null, "Zf Wt H1 EW11", "GSM6256869", null, "source name:wild type 6dpf head|tissue:head|genotype:wild type|treatment:N1", "Zf Wt H1 EW11", "Raw reads were trimed using fastp Trimed reads were aligned to the reference genome using bowtie2 PCR duplicates were removed using umi tools Samtools were used to sort  convert and index alignment files Deeptools were used to generate bigwig files Assembly: GRCz11 Supplementary files format and content: bigwig files\u00a0 Library strategy: PAC seq", "wild type 6dpf head", null, "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "tissue:head|genotype:wild type|treatment:N1", "GSM6256869", "GSM6256869: Zf Wt H1 EW11; Danio rerio; OTHER", "GSM6256869 r1", "GSM6256869", "1", "RNA was harvested using Rneasy mini kit Qiagen. 2 ug of total RNA was used for the construction of sequencing libraries. We reverse transcribed 1 ug of total RNA with the partial P7 adapter Illumina 4N 21T and dNTPs with the addition of spiked in azido nucleotides AzVTPs at 5:1. We click ligated the p5 adapter IDT to the 5\u2032 end of the cDNA with CuAAC. The p5 adaptor contained a UMI. We then amplified the cDNA for 17 cycles with five prime and 3\u2032 indexing primer and purified it on a 2% agarose gel by extracting amplicon from 200 300 base pairs. We pooled the libraries and sequenced single end  100 base pair reads on a NovaSeq Illumina.", null, "OTHER", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP382883", null, "loader:fastq load.py", "Zf_Wt_H1_EW11_R1.fastq.gz", "fastq", 2689461797.0, 22226957.0, "GSM6256869 r1", "0:121", "A:1082451613;C:513056920;G:525960217;T:567960717;N:32330", 121, null, null, null, 1082451613, 513056920, 525960217, 567960717, 32330, "SRX15807626", "SRS13499597", "SRA1440631", "Baylor College of Medicine", "Baylor College of Medicine", 1, 0.55368, null, 0.16655, null, 0.82828, null, 0.69871, null, 121, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2022-06-21", "Larval", "Larval", "Head", "Nervous System"], [75241, "SRR26143471", "SRX21856058", "SRS18582323", "SRP454447", "PRJNA964500", "Danio rerio telencephalon sequencing", "PRJNA964500", "Whole Genome 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