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Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_uni_3_1.txt 3dpl_uni_3_2.txt", "fastq fastq", 7967977760.0, 49799861.0, "E MTAB 9321:3dpl uni 3 ", "0:80 1:80", "A:2260216672;C:1639328793;G:1824529883;T:2241676126;N:2226286", 80, 80, null, null, 2260216672, 1639328793, 1824529883, 2241676126, 2226286, "ERX4268586", "ERS4808143", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90526, 0.90173, 0.44801, 0.44169, 0.73827, 0.74854, 0.51874, 0.52672, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9934, "ERR4321727", "ERX4268585", "ERS4808142", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl uni 2", "SAMEA7047508", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047508|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl uni 2 p", "3dpl uni 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_uni_2_1.txt 3dpl_uni_2_2.txt", "fastq fastq", 9215409600.0, 57596310.0, "E MTAB 9321:3dpl uni 2 ", "0:80 1:80", "A:2620502481;C:1914345031;G:2080364714;T:2597606056;N:2591318", 80, 80, null, null, 2620502481, 1914345031, 2080364714, 2597606056, 2591318, "ERX4268585", "ERS4808142", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91412, 0.91102, 0.42824, 0.4207, 0.73091, 0.73671, 0.52094, 0.52307, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9935, "ERR4321726", "ERX4268584", "ERS4808141", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl uni 1", "SAMEA7047507", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047507|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl uni 1 p", "3dpl uni 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_uni_1_1.txt 3dpl_uni_1_2.txt", "fastq fastq", 9713477280.0, 60709233.0, "E MTAB 9321:3dpl uni 1 ", "0:80 1:80", "A:2666518127;C:1984727973;G:2436235221;T:2623269258;N:2726701", 80, 80, null, null, 2666518127, 1984727973, 2436235221, 2623269258, 2726701, "ERX4268584", "ERS4808141", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91468, 0.89921, 0.41764, 0.40764, 0.73403, 0.74608, 0.52391, 0.52748, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9936, "ERR4321725", "ERX4268583", "ERS4808140", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl uni 3", "SAMEA7047506", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047506|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl uni 3 p", "20hpl uni 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_uni_3_1.txt 20hpl_uni_3_2.txt", "fastq fastq", 8675853280.0, 54224083.0, "E MTAB 9321:20hpl uni 3 ", "0:80 1:80", "A:2365631089;C:1890091876;G:2067595442;T:2325000100;N:27534773", 80, 80, null, null, 2365631089, 1890091876, 2067595442, 2325000100, 27534773, "ERX4268583", "ERS4808140", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90101, 0.90675, 0.42722, 0.4249, 0.74337, 0.75294, 0.51417, 0.52085, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9937, "ERR4321724", "ERX4268582", "ERS4808139", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl uni 2", "SAMEA7047505", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047505|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl uni 2 p", "20hpl uni 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_uni_2_1.txt 20hpl_uni_2_2.txt", "fastq fastq", 4735091040.0, 29594319.0, "E MTAB 9321:20hpl uni 2 ", "0:80 1:80", "A:1061979324;C:1276598224;G:1297035795;T:1098757554;N:720143", 80, 80, null, null, 1061979324, 1276598224, 1297035795, 1098757554, 720143, "ERX4268582", "ERS4808139", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.9384, 0.94067, 0.25644, 0.25853, 0.7877, 0.78843, 0.69474, 0.72221, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9938, "ERR4321723", "ERX4268581", "ERS4808138", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl uni 1", "SAMEA7047504", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047504|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl uni 1 p", "20hpl uni 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_uni_1_1.txt 20hpl_uni_1_2.txt", "fastq fastq", 10122915040.0, 63268219.0, "E MTAB 9321:20hpl uni 1 ", "0:80 1:80", "A:2917523358;C:2094720604;G:2205586268;T:2872641443;N:32443367", 80, 80, null, null, 2917523358, 2094720604, 2205586268, 2872641443, 32443367, "ERX4268581", "ERS4808138", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90867, 0.91132, 0.46283, 0.46241, 0.74858, 0.75357, 0.53145, 0.53522, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9939, "ERR4321722", "ERX4268580", "ERS4808137", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in IWR 3", "SAMEA7047503", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047503|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in IWR 3 p", "3dpl in IWR 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_IWR_3_1.txt 3dpl_in_IWR_3_2.txt", "fastq fastq", 9476807840.0, 59230049.0, "E MTAB 9321:3dpl in IWR 3 ", "0:80 1:80", "A:2639849526;C:1994343199;G:2238787041;T:2601193111;N:2634963", 80, 80, null, null, 2639849526, 1994343199, 2238787041, 2601193111, 2634963, "ERX4268580", "ERS4808137", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91666, 0.90016, 0.41957, 0.41098, 0.72679, 0.73596, 0.52875, 0.53529, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9940, "ERR4321721", "ERX4268579", "ERS4808136", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in IWR 2", "SAMEA7047502", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047502|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in IWR 2 p", "3dpl in IWR 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_IWR_2_1.txt 3dpl_in_IWR_2_2.txt", "fastq fastq", 7305898240.0, 45661864.0, "E MTAB 9321:3dpl in IWR 2 ", "0:80 1:80", "A:2035812198;C:1535985603;G:1714961805;T:2017139933;N:1998701", 80, 80, null, null, 2035812198, 1535985603, 1714961805, 2017139933, 1998701, "ERX4268579", "ERS4808136", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91721, 0.90787, 0.40247, 0.39455, 0.72916, 0.74097, 0.52622, 0.52732, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9941, "ERR4321720", "ERX4268578", "ERS4808135", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in IWR 1", "SAMEA7047501", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047501|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in IWR 1 p", "3dpl in IWR 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_IWR_1_1.txt 3dpl_in_IWR_1_2.txt", "fastq fastq", 5893946400.0, 36837165.0, "E MTAB 9321:3dpl in IWR 1 ", "0:80 1:80", "A:1170533263;C:1737932152;G:1758304403;T:1226290662;N:885920", 80, 80, null, null, 1170533263, 1737932152, 1758304403, 1226290662, 885920, "ERX4268578", "ERS4808135", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.95436, 0.95726, 0.17474, 0.17743, 0.77031, 0.7726, 0.72793, 0.73265, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9942, "ERR4321719", "ERX4268577", "ERS4808134", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in IWR 3", "SAMEA7047500", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047500|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in IWR 3 p", "20hpl in IWR 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_IWR_3_1.txt 20hpl_in_IWR_3_2.txt", "fastq fastq", 6198105920.0, 38738162.0, "E MTAB 9321:20hpl in IWR 3 ", "0:80 1:80", "A:1441128066;C:1626141975;G:1647720111;T:1482170340;N:945428", 80, 80, null, null, 1441128066, 1626141975, 1647720111, 1482170340, 945428, "ERX4268577", "ERS4808134", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.94334, 0.94604, 0.2532, 0.25458, 0.75941, 0.76086, 0.66584, 0.67193, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9943, "ERR4321718", "ERX4268576", "ERS4808133", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in IWR 2", "SAMEA7047499", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047499|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in IWR 2 p", "20hpl in IWR 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_IWR_2_1.txt 20hpl_in_IWR_2_2.txt", "fastq fastq", 8244868480.0, 51530428.0, "E MTAB 9321:20hpl in IWR 2 ", "0:80 1:80", "A:2326026663;C:1706321438;G:1913900194;T:2272224793;N:26395392", 80, 80, null, null, 2326026663, 1706321438, 1913900194, 2272224793, 26395392, "ERX4268576", "ERS4808133", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91275, 0.90955, 0.44535, 0.44255, 0.74456, 0.75298, 0.53931, 0.53823, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9944, "ERR4321717", "ERX4268575", "ERS4808132", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in IWR 1", "SAMEA7047498", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047498|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in IWR 1 p", "20hpl in IWR 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_IWR_1_1.txt 20hpl_in_IWR_1_2.txt", "fastq fastq", 8946910240.0, 55918189.0, "E MTAB 9321:20hpl in IWR 1 ", "0:80 1:80", "A:2523280880;C:1876368998;G:2029673577;T:2489111763;N:28475022", 80, 80, null, null, 2523280880, 1876368998, 2029673577, 2489111763, 28475022, "ERX4268575", "ERS4808132", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91067, 0.90286, 0.45601, 0.44987, 0.7335, 0.74119, 0.51443, 0.51662, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9945, "ERR4321716", "ERX4268574", "ERS4808131", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in 3", "SAMEA7047497", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047497|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in 3 p", "3dpl in 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_3_1.txt 3dpl_in_3_2.txt", "fastq fastq", 9556572640.0, 59728579.0, "E MTAB 9321:3dpl in 3 ", "0:80 1:80", "A:2669191918;C:1902750470;G:2361798477;T:2620161228;N:2670547", 80, 80, null, null, 2669191918, 1902750470, 2361798477, 2620161228, 2670547, "ERX4268574", "ERS4808131", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91175, 0.89329, 0.42236, 0.413, 0.72671, 0.74156, 0.52222, 0.52828, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9946, "ERR4321715", "ERX4268573", "ERS4808130", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in 2", "SAMEA7047496", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047496|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in 2 p", "3dpl in 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_2_1.txt 3dpl_in_2_2.txt", "fastq fastq", 10848117120.0, 67800732.0, "E MTAB 9321:3dpl in 2 ", "0:80 1:80", "A:2935795866;C:2381506213;G:2652994352;T:2874780262;N:3040427", 80, 80, null, null, 2935795866, 2381506213, 2652994352, 2874780262, 3040427, "ERX4268573", "ERS4808130", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91965, 0.89867, 0.42158, 0.41268, 0.73342, 0.74249, 0.56938, 0.56978, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9947, "ERR4321714", "ERX4268572", "ERS4808129", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl in 1", "SAMEA7047495", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047495|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:3dpl in 1 p", "3dpl in 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "3dpl_in_1_1.txt 3dpl_in_1_2.txt", "fastq fastq", 12371488960.0, 77321806.0, "E MTAB 9321:3dpl in 1 ", "0:80 1:80", "A:3438091571;C:2664088451;G:2872543859;T:3393310483;N:3454596", 80, 80, null, null, 3438091571, 2664088451, 2872543859, 3393310483, 3454596, "ERX4268572", "ERS4808129", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92096, 0.90884, 0.39682, 0.3843, 0.72614, 0.73401, 0.53892, 0.53838, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9948, "ERR4321713", "ERX4268571", "ERS4808128", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in 3", "SAMEA7047494", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047494|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 3|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in 3 p", "20hpl in 3 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_3_1.txt 20hpl_in_3_2.txt", "fastq fastq", 10464739040.0, 65404619.0, "E MTAB 9321:20hpl in 3 ", "0:80 1:80", "A:2995469080;C:2169447356;G:2318878018;T:2947444090;N:33500496", 80, 80, null, null, 2995469080, 2169447356, 2318878018, 2947444090, 33500496, "ERX4268571", "ERS4808128", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.9098, 0.91109, 0.46632, 0.4653, 0.74276, 0.75077, 0.51527, 0.52148, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9949, "ERR4321712", "ERX4268570", "ERS4808127", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in 2", "SAMEA7047493", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047493|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 2|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in 2 p", "20hpl in 2 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_2_1.txt 20hpl_in_2_2.txt", "fastq fastq", 8520377280.0, 53252358.0, "E MTAB 9321:20hpl in 2 ", "0:80 1:80", "A:2416849489;C:1735946163;G:1978475279;T:2361749789;N:27356560", 80, 80, null, null, 2416849489, 1735946163, 1978475279, 2361749789, 27356560, "ERX4268570", "ERS4808127", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.91434, 0.91, 0.42899, 0.42662, 0.73917, 0.74876, 0.52201, 0.51826, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [9950, "ERR4321711", "ERX4268569", "ERS4808126", "ERP122765", "PRJEB39269", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00df catenin signaling at the early wound healing stage", "E-MTAB-9321", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/\u00df catenin signaling as a key pathway that is activated at the early wound healing stage.", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "20hpl in 1", "SAMEA7047492", "Izmir Biomedicine and Genome Center", "ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047492|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "E MTAB 9321:20hpl in 1 p", "20hpl in 1 p", "Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u03b2 catenin signaling at the early wound healing stage", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP122765", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/\u00ce\u00b2 catenin signaling at the early wound healing stage", "ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07", "20hpl_in_1_1.txt 20hpl_in_1_2.txt", "fastq fastq", 7150452800.0, 44690330.0, "E MTAB 9321:20hpl in 1 ", "0:80 1:80", "A:1771803292;C:1779551247;G:1798541378;T:1799460160;N:1096723", 80, 80, null, null, 1771803292, 1779551247, 1798541378, 1799460160, 1096723, "ERX4268569", "ERS4808126", "ERA2763798", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92622, 0.93038, 0.35018, 0.35291, 0.7727, 0.77396, 0.64402, 0.65297, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2020-07-06", "Adult", "Adult", "Brain", "Nervous System"], [10324, "ERR7384926", "ERX6953430", "ERS8736631", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 5", "SAMEA11086968", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086968|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 5|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 5|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 5 p", "Ctrl 5 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-5_1.fastq.gz Ctrl-5_2.fastq.gz", "fastq fastq", 7836077760.0, 48975486.0, "E MTAB 11163:Ctrl 5 ", "0:80 1:80", "A:2197807782;C:1719033269;G:1762364798;T:2156195280;N:676631", 80, 80, null, null, 2197807782, 1719033269, 1762364798, 2156195280, 676631, "ERX6953430", "ERS8736631", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93458, 0.93849, 0.19317, 0.18598, 0.72855, 0.72784, 0.48113, 0.4814, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10325, "ERR7384925", "ERX6953429", "ERS8736630", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 4", "SAMEA11086967", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086967|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 4 p", "Ctrl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-4_1.fastq.gz Ctrl-4_2.fastq.gz", "fastq fastq", 11841052800.0, 74006580.0, "E MTAB 11163:Ctrl 4 ", "0:80 1:80", "A:3269511229;C:2469072822;G:2920921930;T:3177156542;N:4390277", 80, 80, null, null, 3269511229, 2469072822, 2920921930, 3177156542, 4390277, "ERX6953429", "ERS8736630", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86759, 0.86792, 0.43044, 0.42689, 0.75469, 0.76717, 0.55291, 0.55788, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10326, "ERR7384924", "ERX6953428", "ERS8736629", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 3", "SAMEA11086966", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086966|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 3 p", "Ctrl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-3_1.fastq.gz Ctrl-3_2.fastq.gz", "fastq fastq", 14286470240.0, 89290439.0, "E MTAB 11163:Ctrl 3 ", "0:80 1:80", "A:3956940377;C:3071545407;G:3372465520;T:3880155204;N:5363732", 80, 80, null, null, 3956940377, 3071545407, 3372465520, 3880155204, 5363732, "ERX6953428", "ERS8736629", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.87493, 0.87449, 0.43889, 0.44065, 0.7541, 0.76402, 0.5369, 0.53575, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10327, "ERR7384923", "ERX6953427", "ERS8736628", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 2", "SAMEA11086965", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086965|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 2 p", "Ctrl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-2_1.fastq.gz Ctrl-2_2.fastq.gz", "fastq fastq", 13169862240.0, 82311639.0, "E MTAB 11163:Ctrl 2 ", "0:80 1:80", "A:3683560119;C:2823399426;G:3030116974;T:3627855699;N:4930022", 80, 80, null, null, 3683560119, 2823399426, 3030116974, 3627855699, 4930022, "ERX6953427", "ERS8736628", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86757, 0.87095, 0.44548, 0.45008, 0.75536, 0.76343, 0.53366, 0.54558, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10328, "ERR7384922", "ERX6953426", "ERS8736627", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Ctrl 1", "SAMEA11086964", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086964|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:Ctrl 1 p", "Ctrl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:n1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "Ctrl-1_1.fastq.gz Ctrl-1_2.fastq.gz", "fastq fastq", 11349398560.0, 70933741.0, "E MTAB 11163:Ctrl 1 ", "0:80 1:80", "A:3132234873;C:2275439795;G:2903048149;T:3034427880;N:4247863", 80, 80, null, null, 3132234873, 2275439795, 2903048149, 3034427880, 4247863, "ERX6953426", "ERS8736627", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86563, 0.85769, 0.45807, 0.45717, 0.75542, 0.76999, 0.53285, 0.52788, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10329, "ERR7384921", "ERX6953425", "ERS8736626", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 4", "SAMEA11086962", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086962|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 4 p", "3dpl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-4_1.fastq.gz 3dpl-4_2.fastq.gz", "fastq fastq", 12269133600.0, 76682085.0, "E MTAB 11163:3dpl 4 ", "0:80 1:80", "A:3308670822;C:2612099729;G:3097254260;T:3246547111;N:4561678", 80, 80, null, null, 3308670822, 2612099729, 3097254260, 3246547111, 4561678, "ERX6953425", "ERS8736626", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.88949, 0.88423, 0.41382, 0.41463, 0.73856, 0.75209, 0.54087, 0.53814, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10330, "ERR7384920", "ERX6953424", "ERS8736625", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 3", "SAMEA11086961", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086961|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 3 p", "3dpl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-3_1.fastq.gz 3dpl-3_2.fastq.gz", "fastq fastq", 12561832800.0, 78511455.0, "E MTAB 11163:3dpl 3 ", "0:80 1:80", "A:3518655485;C:2691495460;G:2879365772;T:3467606057;N:4710026", 80, 80, null, null, 3518655485, 2691495460, 2879365772, 3467606057, 4710026, "ERX6953424", "ERS8736625", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.86128, 0.86324, 0.43991, 0.44309, 0.73998, 0.74761, 0.5283, 0.52762, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10331, "ERR7384919", "ERX6953423", "ERS8736624", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 2", "SAMEA11086960", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086960|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 2 p", "3dpl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-2_1.fastq.gz 3dpl-2_2.fastq.gz", "fastq fastq", 12727937600.0, 79549610.0, "E MTAB 11163:3dpl 2 ", "0:80 1:80", "A:3511550580;C:2718113416;G:3063150762;T:3430381211;N:4741631", 80, 80, null, null, 3511550580, 2718113416, 3063150762, 3430381211, 4741631, "ERX6953423", "ERS8736624", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.88126, 0.88294, 0.42008, 0.41964, 0.72687, 0.73811, 0.52924, 0.52812, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10332, "ERR7384918", "ERX6953422", "ERS8736623", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "3dpl 1", "SAMEA11086959", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086959|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:3dpl 1 p", "3dpl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:3", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "3dpl-1_1.fastq.gz 3dpl-1_2.fastq.gz", "fastq fastq", 10910301440.0, 68189384.0, "E MTAB 11163:3dpl 1 ", "0:80 1:80", "A:2970902938;C:2403780256;G:2602413517;T:2929186974;N:4017755", 80, 80, null, null, 2970902938, 2403780256, 2602413517, 2929186974, 4017755, "ERX6953422", "ERS8736623", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.84003, 0.84172, 0.34597, 0.34824, 0.71589, 0.72466, 0.52558, 0.52286, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10333, "ERR7384917", "ERX6953421", "ERS8736622", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 5", "SAMEA11086958", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086958|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 5|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 5|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 5 p", "1dpl 5 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-5_1.fastq.gz 1dpl-5_2.fastq.gz", "fastq fastq", 10425544320.0, 65159652.0, "E MTAB 11163:1dpl 5 ", "0:80 1:80", "A:3050099743;C:2153241581;G:2229178430;T:2992123587;N:900979", 80, 80, null, null, 3050099743, 2153241581, 2229178430, 2992123587, 900979, "ERX6953421", "ERS8736622", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92853, 0.93189, 0.23718, 0.23074, 0.72366, 0.72052, 0.49924, 0.511, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10334, "ERR7384916", "ERX6953420", "ERS8736621", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 4", "SAMEA11086957", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086957|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 4 p", "1dpl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-4_1.fastq.gz 1dpl-4_2.fastq.gz", "fastq fastq", 9244695360.0, 57779346.0, "E MTAB 11163:1dpl 4 ", "0:80 1:80", "A:2617398368;C:2006695457;G:2057821797;T:2561969157;N:810581", 80, 80, null, null, 2617398368, 2006695457, 2057821797, 2561969157, 810581, "ERX6953420", "ERS8736621", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93687, 0.94089, 0.20045, 0.19324, 0.71674, 0.71506, 0.49841, 0.50035, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10335, "ERR7384915", "ERX6953419", "ERS8736620", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 3", "SAMEA11086956", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086956|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 3 p", "1dpl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-3_1.fastq.gz 1dpl-3_2.fastq.gz", "fastq fastq", 9373333280.0, 58583333.0, "E MTAB 11163:1dpl 3 ", "0:80 1:80", "A:2671556387;C:2008711931;G:2062635156;T:2629594613;N:835193", 80, 80, null, null, 2671556387, 2008711931, 2062635156, 2629594613, 835193, "ERX6953419", "ERS8736620", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93438, 0.93842, 0.21075, 0.20463, 0.71459, 0.71246, 0.50094, 0.50105, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10336, "ERR7384914", "ERX6953418", "ERS8736619", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 2", "SAMEA11086955", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086955|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 2 p", "1dpl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-2_1.fastq.gz 1dpl-2_2.fastq.gz", "fastq fastq", 9647031680.0, 60293948.0, "E MTAB 11163:1dpl 2 ", "0:80 1:80", "A:2807310022;C:2016751282;G:2080246249;T:2741889329;N:834798", 80, 80, null, null, 2807310022, 2016751282, 2080246249, 2741889329, 834798, "ERX6953418", "ERS8736619", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.92564, 0.92819, 0.22329, 0.21583, 0.72028, 0.71877, 0.50128, 0.50045, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10337, "ERR7384913", "ERX6953417", "ERS8736618", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "1dpl 1", "SAMEA11086954", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086954|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:1dpl 1 p", "1dpl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:1", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "1dpl-1_1.fastq.gz 1dpl-1_2.fastq.gz", "fastq fastq", 10054666560.0, 62841666.0, "E MTAB 11163:1dpl 1 ", "0:80 1:80", "A:2921800431;C:2104003276;G:2166908855;T:2861086535;N:867463", 80, 80, null, null, 2921800431, 2104003276, 2166908855, 2861086535, 867463, "ERX6953417", "ERS8736618", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.93251, 0.9361, 0.22525, 0.21776, 0.71806, 0.71478, 0.5039, 0.50925, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10338, "ERR7384912", "ERX6953416", "ERS8736617", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 4", "SAMEA11086953", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086953|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 4|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 4 p", "14dpl 4 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-4_1.fastq.gz 14dpl-4_2.fastq.gz", "fastq fastq", 10510375520.0, 65689847.0, "E MTAB 11163:14dpl 4 ", "0:80 1:80", "A:2894001008;C:2230656231;G:2530263174;T:2852841235;N:2613872", 80, 80, null, null, 2894001008, 2230656231, 2530263174, 2852841235, 2613872, "ERX6953416", "ERS8736617", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.8951, 0.89119, 0.46407, 0.46205, 0.74349, 0.75043, 0.52432, 0.52127, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10339, "ERR7384911", "ERX6953415", "ERS8736616", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 3", "SAMEA11086952", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086952|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 3|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 3 p", "14dpl 3 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-3_1.fastq.gz 14dpl-3_2.fastq.gz", "fastq fastq", 12643445600.0, 79021535.0, "E MTAB 11163:14dpl 3 ", "0:80 1:80", "A:3542554562;C:2679505652;G:2918520292;T:3499712681;N:3152413", 80, 80, null, null, 3542554562, 2679505652, 2918520292, 3499712681, 3152413, "ERX6953415", "ERS8736616", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90044, 0.9018, 0.4852, 0.48223, 0.75022, 0.7557, 0.52769, 0.50719, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10340, "ERR7384910", "ERX6953414", "ERS8736615", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 2", "SAMEA11086951", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086951|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 2|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 2 p", "14dpl 2 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "Experimental Factor: injury:stab lesion|Experimental Factor: time:14", "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP133301", "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", "14dpl-2_1.fastq.gz 14dpl-2_2.fastq.gz", "fastq fastq", 23194452640.0, 144965329.0, "E MTAB 11163:14dpl 2 ", "0:80 1:80", "A:6438735597;C:4960360012;G:5452621343;T:6336943660;N:5792028", 80, 80, null, null, 6438735597, 4960360012, 5452621343, 6336943660, 5792028, "ERX6953414", "ERS8736615", "ERA7396457", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", "Izmir Biomedicine and Genome Center|European Nucleotide Archive", 2, 0.90763, 0.89955, 0.47238, 0.46518, 0.7446, 0.75544, 0.5513, 0.5514, 80, 80, "B", "B", "biological fallback assumption", "illumina", "nextseq", "full_length", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "Turkey", "2022-01-31", "Adult", "Adult", "Brain", "Nervous System"], [10341, "ERR7384909", "ERX6953413", "ERS8736614", "ERP133301", "PRJEB48872", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "E-MTAB-11163", "Transcriptome Analysis", "Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.", "ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31", null, "Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina", "14dpl 1", "SAMEA11086950", "Izmir Biomedicine and Genome Center", "ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086950|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 1|sex:male|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon", "E MTAB 11163:14dpl 1 p", "14dpl 1 p", "Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon", "Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. 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null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CK2_R1.fastq.gz CK2_R2.fastq.gz", "fastq fastq", 7590854258.0, 25135279.0, "CK2 R1.fastq.gz", "0:151 1:151", "A:2041517653;C:1754766573;G:1784738177;T:2009814138;N:17717", 151, 151, null, null, 2041517653, 1754766573, 1784738177, 2009814138, 17717, "SRX13216733", "SRS11142398", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.93771, 0.93725, 0.07877, 0.07858, 0.71739, 0.71747, 0.49923, 0.49556, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67055, "SRR17026706", "SRX13216732", "SRS11142395", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "G", "C KO", "CK1", null, 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line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CM3", "CM3", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CM3_R1.fastq.gz CM3_R2.fastq.gz", "fastq fastq", 6554074064.0, 21702232.0, "CM3 R1.fastq.gz", "0:151 1:151", "A:1751561620;C:1527225291;G:1555097615;T:1720174098;N:15440", 151, 151, null, null, 1751561620, 1527225291, 1555097615, 1720174098, 15440, "SRX13216731", "SRS11142393", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.94488, 0.9451, 0.06843, 0.0681, 0.72829, 0.72817, 0.50055, 0.5012, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67057, "SRR17026708", "SRX13216730", "SRS11142392", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "E", "C Male", "CM2", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CM2", "CM2", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CM2_R1.fastq.gz CM2_R2.fastq.gz", "fastq fastq", 6775620962.0, 22435831.0, "CM2 R1.fastq.gz", "0:151 1:151", "A:1822502937;C:1567415362;G:1594060885;T:1791625779;N:15999", 151, 151, null, null, 1822502937, 1567415362, 1594060885, 1791625779, 15999, "SRX13216730", "SRS11142392", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.94019, 0.94062, 0.07513, 0.0751, 0.71847, 0.71922, 0.4841, 0.49018, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67058, "SRR17026709", "SRX13216729", "SRS11142394", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "D", "C Male", "CM1", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CM1", "CM1", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CM1_R1.fastq.gz CM1_R2.fastq.gz", "fastq fastq", 7547878148.0, 24992974.0, "CM1 R1.fastq.gz", "0:151 1:151", "A:2049794521;C:1727106839;G:1752167931;T:2018790733;N:18124", 151, 151, null, null, 2049794521, 1727106839, 1752167931, 2018790733, 18124, "SRX13216729", "SRS11142394", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.93694, 0.9365, 0.08422, 0.08378, 0.71658, 0.71654, 0.49676, 0.4978, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67059, "SRR17026710", "SRX13216728", "SRS11142390", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "C", "C Female", "CF3", null, "strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Brain", "CF3", "CF3", "Sex", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP347573", null, null, "CF3_R1.fastq.gz CF3_R2.fastq.gz", "fastq fastq", 6471047922.0, 21427311.0, "CF3 R1.fastq.gz", "0:151 1:151", "A:1715522671;C:1521915743;G:1546665820;T:1686928589;N:15099", 151, 151, null, null, 1715522671, 1521915743, 1546665820, 1686928589, 15099, "SRX13216728", "SRS11142390", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.94618, 0.94583, 0.05607, 0.05556, 0.73184, 0.73158, 0.5025, 0.50567, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [67060, "SRR17026711", "SRX13216727", "SRS11142391", "SRP347573", "PRJNA783180", "Zebrafish  Brain", "PRJNA783180", "Other", "Zebrafish Brain", null, null, "B", "C Female", "CF2", null, 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"SRS11142389", "SRA1334340", "Chinese Academy of Sciences|Institute of Hydrology", "Chinese Academy of Sciences", 2, 0.9424, 0.94214, 0.07069, 0.07015, 0.71934, 0.72019, 0.49122, 0.49476, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-11-24", "Adult", "Adult", "Brain", "Nervous System"], [75241, "SRR26143471", "SRX21856058", "SRS18582323", "SRP454447", "PRJNA964500", "Danio rerio telencephalon sequencing", "PRJNA964500", "Whole Genome Sequencing", "We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.", null, null, null, null, "f35", null, "strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:35|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of Danio rerio: adult telencephalon", "f35 Dl", "f35 Dl", "RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP454447", null, null, "2556F42-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L004_R1_001.fastq.gz 2556F42-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L005_R1_001.fastq.gz 2556F42-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L006_R1_001.fastq.gz 2556F42-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L007_R1_001.fastq.gz", "fastq fastq fastq fastq", 1040429325.0, 20400575.0, "2556F42 1 200908 D00404 0493 ACECY3ANXX TAGGCATG TATCCTCT L004 R1 001.fastq.gz", "0:51", "A:259587031;C:255198479;G:241421038;T:284158496;N:64281", 51, null, null, null, 259587031, 255198479, 241421038, 284158496, 64281, "SRX21856058", "SRS18582323", "SRA1717885", "Friedrich Miescher Institute for 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[experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"technology\" = :p1 and \"tissue_curation\" = :p2 order by rowid limit 101", "params": {"p0": "other", "p1": "unknown", "p2": "Brain"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "other", "label": "other", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?technology=unknown&tissue_curation=Brain", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "PAIRED", "label": "PAIRED", "count": 51, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&experiment.library_layout=PAIRED", "selected": false}, {"value": "SINGLE", "label": "SINGLE", "count": 47, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&experiment.platform=ILLUMINA", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "Adult", "label": "Adult", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&devstage_curation_coarse=Adult", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "Adult", "label": "Adult", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&devstage_curation=Adult", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "Nervous System", "label": "Nervous System", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain&tissue_curation_coarse=Nervous+System", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "Brain", "label": "Brain", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown", "selected": true}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown&tissue_curation=Brain", "results": [{"value": "unknown", "label": "unknown", "count": 98, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&tissue_curation=Brain", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 111.0024829977192}