{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"other\", experiment.platform = \"BGISEQ\" and technology = \"unknown\"", "rows": [[52210, "SRR9021058", "SRX5799154", "SRS4730324", "SRP195685", "PRJNA541367", "Global transcriptomic analysis of zebrafish glucagon receptor mutant", "PRJNA541367", "Other", "We performed RNA sequencing RNA seq analysis of whole fish to provide a comprehensive view of its global transcriptomic regulation in this study.", null, null, null, null, "WT 1", null, "replicate:biological replicate 1|strain:AB|age:7 days|sex:not applicable|tissue:total|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Diano rerio transcriptome", "WT 1 20190506 1", "WT 1 20190506 1", "RNA seq of WT Diano rerio", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP195685", null, "loader:fastq load.py", "WT1.1.fq", "fastq", 1094498950.0, 21889979.0, "WT1.1.fq", "0:50", "A:291195764;C:255539280;G:262638316;T:284737693;N:387897", 50, null, null, null, 291195764, 255539280, 262638316, 284737693, 387897, "SRX5799154", "SRS4730324", "SRA883435", "Xiamen University|School of Pharmaceutical Sciences", "Xiamen University", 1, 0.94195, null, 0.09713, null, 0.66689, null, 0.47749, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-18", "Larval", "Larval", "Undetermined", "Undetermined"], [52211, "SRR9021059", "SRX5799153", "SRS4730323", "SRP195685", "PRJNA541367", "Global transcriptomic analysis of zebrafish glucagon receptor mutant", "PRJNA541367", "Other", "We performed RNA sequencing RNA seq analysis of whole fish to provide a comprehensive view of its global transcriptomic regulation in this study.", null, null, null, null, "WT 2", null, "replicate:biological replicate 2|strain:AB|age:7 days|sex:not applicable|tissue:total|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Diano rerio transcriptome", "WT 2 20190506 2", "WT 2 20190506 2", "RNA seq of WT Diano rerio", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP195685", null, "loader:fastq load.py", "WT2.1.fq", "fastq", 1095133200.0, 21902664.0, "WT2.1.fq", "0:50", "A:290594757;C:255644044;G:259681140;T:288014102;N:1199157", 50, null, null, null, 290594757, 255644044, 259681140, 288014102, 1199157, "SRX5799153", "SRS4730323", "SRA883435", "Xiamen University|School of Pharmaceutical Sciences", "Xiamen University", 1, 0.93368, null, 0.09166, null, 0.67085, null, 0.46523, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-18", "Larval", "Larval", "Undetermined", "Undetermined"], [52212, "SRR9021060", "SRX5799152", "SRS4730322", "SRP195685", "PRJNA541367", "Global transcriptomic analysis of zebrafish glucagon receptor mutant", "PRJNA541367", "Other", "We performed RNA sequencing RNA seq analysis of whole fish to provide a comprehensive view of its global transcriptomic regulation in this study.", null, null, null, null, "WT 3", null, "replicate:biological replicate 3|strain:AB|age:7 days|sex:not applicable|tissue:total|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Diano rerio transcriptome", "WT 3 20190506 3", "WT 3 20190506 3", "RNA seq of WT Diano rerio", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP195685", null, "loader:fastq load.py", "WT3.1.fq", "fastq", 1096083900.0, 21921678.0, "WT3.1.fq", "0:50", "A:290332094;C:256993500;G:263043956;T:285349722;N:364628", 50, null, null, null, 290332094, 256993500, 263043956, 285349722, 364628, "SRX5799152", "SRS4730322", "SRA883435", "Xiamen University|School of Pharmaceutical Sciences", "Xiamen University", 1, 0.94147, null, 0.10157, null, 0.66135, null, 0.47301, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-18", "Larval", "Larval", "Undetermined", "Undetermined"], [52213, "SRR9021061", "SRX5799151", "SRS4730320", "SRP195685", "PRJNA541367", "Global transcriptomic analysis of zebrafish glucagon receptor mutant", "PRJNA541367", "Other", "We performed RNA sequencing RNA seq analysis of whole fish to provide a comprehensive view of its global transcriptomic regulation in this study.", null, null, null, null, "gcgr 1", null, "replicate:biological replicate 1|strain:AB|age:7 days|sex:not applicable|tissue:total|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Diano rerio transcriptome", "gcgr 1 20190506 1", "gcgr 1 20190506 1", "RNA seq of Diano rerio with gcgr mutant", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP195685", null, "loader:fastq load.py", "gcgr1.1.fq", "fastq", 1096307200.0, 21926144.0, "gcgr1.1.fq", "0:50", "A:288839446;C:258297625;G:264630675;T:284199738;N:339716", 50, null, null, null, 288839446, 258297625, 264630675, 284199738, 339716, "SRX5799151", "SRS4730320", "SRA883435", "Xiamen University|School of Pharmaceutical Sciences", "Xiamen University", 1, 0.94131, null, 0.09307, null, 0.67574, null, 0.46993, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-18", "Larval", "Larval", "Undetermined", "Undetermined"], [52214, "SRR9021062", "SRX5799150", "SRS4730321", "SRP195685", "PRJNA541367", "Global transcriptomic analysis of zebrafish glucagon receptor mutant", "PRJNA541367", "Other", "We performed RNA sequencing RNA seq analysis of whole fish to provide a comprehensive view of its global transcriptomic regulation in this study.", null, null, null, null, "gcgr 2", null, "replicate:biological replicate 2|strain:AB|age:7 days|sex:not applicable|tissue:total|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Diano rerio transcriptome", "gcgr 2 20190506 2", "gcgr 2 20190506 2", "RNA seq of Diano rerio with gcgr mutant", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP195685", null, "loader:fastq load.py", "gcgr2.1.fq", "fastq", 1094410100.0, 21888202.0, "gcgr2.1.fq", "0:50", "A:290062779;C:256358687;G:264488431;T:282812212;N:687991", 50, null, null, null, 290062779, 256358687, 264488431, 282812212, 687991, "SRX5799150", "SRS4730321", "SRA883435", "Xiamen University|School of Pharmaceutical Sciences", "Xiamen University", 1, 0.94074, null, 0.09337, null, 0.67633, null, 0.46861, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-18", "Larval", "Larval", "Undetermined", "Undetermined"], [52215, "SRR9021063", "SRX5799149", "SRS4730319", "SRP195685", "PRJNA541367", "Global transcriptomic analysis of zebrafish glucagon receptor mutant", "PRJNA541367", "Other", "We performed RNA sequencing RNA seq analysis of whole fish to provide a comprehensive view of its global transcriptomic regulation in this study.", null, null, null, null, "gcgr 3", null, "replicate:biological replicate 3|strain:AB|age:7 days|sex:not applicable|tissue:total|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Diano rerio transcriptome", "gcgr 3 20190506 3", "gcgr 3 20190506 3", "RNA seq of Diano rerio with gcgr mutant", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP195685", null, "loader:fastq load.py", "gcgr3.1.fq", "fastq", 1094284800.0, 21885696.0, "gcgr3.1.fq", "0:50", "A:289313514;C:257096636;G:264011408;T:283143600;N:719642", 50, null, null, null, 289313514, 257096636, 264011408, 283143600, 719642, "SRX5799149", "SRS4730319", "SRA883435", "Xiamen University|School of Pharmaceutical Sciences", "Xiamen University", 1, 0.94222, null, 0.09557, null, 0.67521, null, 0.46664, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-18", "Larval", "Larval", "Undetermined", "Undetermined"]], "truncated": false, "filtered_table_rows_count": 6, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"experiment.platform\" = :p1 and \"technology\" = :p2 order by rowid limit 101", "params": {"p0": "other", "p1": "BGISEQ", "p2": "unknown"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "other", "label": "other", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.platform=BGISEQ&technology=unknown", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "SINGLE", "label": "SINGLE", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "BGISEQ", "label": "BGISEQ", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&technology=unknown", "selected": true}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "Larval", "label": "Larval", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&devstage_curation_coarse=Larval", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "Larval", "label": "Larval", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&devstage_curation=Larval", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "Undetermined", "label": "Undetermined", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&tissue_curation_coarse=Undetermined", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "Undetermined", "label": "Undetermined", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown&tissue_curation=Undetermined", "selected": false}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ&technology=unknown", "results": [{"value": "unknown", "label": "unknown", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&experiment.platform=BGISEQ", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 73.52556700061541}