{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"cDNA_oligo_dT\", experiment.library_source = \"TRANSCRIPTOMIC\" and tissue_curation_coarse = \"Nervous System\"", "rows": [[30691, "SRR28270998", "SRX23880961", "SRS20704477", "SRP494117", "PRJNA1085662", "Roxithromycin exposure induces motoneuron malformation and behavioral deficits of zebrafish by interfering with the differentiation of motor neuron progenitor cells", "PRJNA1085662", "Other", "Roxithromycin ROX  a commonly used macrolide antibiotic  is extensively employed in human medicine and livestock industries. Due to its structural stability and resistance to biological degradation  ROX persists as a resilient environmental contaminant  detectable in aquatic ecosystems and food products. However  our understanding of the potential health risks to humans from continuous ROX exposure remains limited. In this study  we used the zebrafish as a vertebrate model to explore the potential developmental toxicity of early ROX exposure  particularly focusing on its effects on locomotor functionality and motoneuron development. Early exposure to ROX induces marked developmental toxicity in zebrafish embryos  significantly reducing hatch rates  body lengths  and increased malformation rates. Moreover  ROX exposure adversely affected the locomotive capacity of zebrafish embryos  and observations in transgenic zebrafish Tghb9:eGFP revealed axonal loss in motor neurons  evident through reduced or irregular axonal lengths. Concurrently  abnormal apoptosis in ROX exposed zebrafish embryos intensified alongside the upregulation of apoptosis related genes bax  bcl2  caspase 3a. Single cell sequencing further disclosed substantial effects of ROX on genes involved in the differentiation of motor neuron progenitor cells ngn1  olig2  axon development cd82a  mbpa  plp1b  sema5a  and neuroimmunity aplnrb  aplnra in zebrafish larvae. Furthermore  the motor neuron defects induced by ROX can be rescued by administering ngn1 agonist. In summary  ROX exposure leads to early life abnormalities in zebrafish motor neurons and locomotor behavior by hindering the differentiation of motor neuron progenitor cells and inducing abnormal apoptosis.", null, null, null, null, "WT", null, "strain:not provided|isolate:not provided|breed:not provided|cultivar:not provided|ecotype:not provided|age:not provided|dev stage:not provided|collection date:not provided|geo loc name:not provided|sex:not provided|tissue:Cerebrum|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Roxithromycin exposure induces mot1uron malformation and behavioral deficits of zebrafish by interfering with the differentiation of motor neuron progenitor cells", "DANIO", "DANIO", "Illumina Second Generation Sequencing", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP494117", null, null, "WT_S1_L001_I1_001.fastq.gz", "fastq", 7991376264.0, 998922033.0, "WT S1 L001 I1 001.fastq.gz", "0:8", "A:2573734851;C:1426474966;G:1492966198;T:2498173074;N:27175", 8, null, null, null, 2573734851, 1426474966, 1492966198, 2498173074, 27175, "SRX23880961", "SRS20704477", "SRA1820072", "shantou university|Neurobiology Center", "shantou university", 1, 0.0, null, 0.0, null, 1.0, null, null, null, 8, null, "T", null, "under 1.2% mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "sc_generic", "single_cell_generic", "generic-scrnaseq-only", null, "China", "2024-03-11", "Undetermined", "Multi-stage", "Brain", "Nervous System"], [32107, "SRR29012733", "SRX24539435", "SRS21284312", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "I3 TK13", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:I3 TK13|treatment:ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK13", "TK13", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "I3-TK13_S9_R1_001.fastq.gz I3-TK13_S9_R2_001.fastq.gz", "fastq fastq", 1951476351.0, 9046948.0, "I3 TK13 S9 R1 001.fastq.gz", "0:107.84 1:107.86", "A:532508211;C:436986899;G:434983140;T:539541026;N:7457075", 107, 107, null, null, 532508211, 436986899, 434983140, 539541026, 7457075, "SRX24539435", "SRS21284312", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32108, "SRR29012734", "SRX24539434", "SRS21284311", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "I2 TK12", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:I2 TK12|treatment:ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK12", "TK12", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "I2-TK12_S8_R1_001.fastq.gz I2-TK12_S8_R2_001.fastq.gz", "fastq fastq", 2483693754.0, 11573280.0, "I2 TK12 S8 R1 001.fastq.gz", "0:107.28 1:107.32", "A:690681797;C:542407183;G:537633561;T:698259696;N:14711517", 107, 107, null, null, 690681797, 542407183, 537633561, 698259696, 14711517, "SRX24539434", "SRS21284311", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32109, "SRR29012735", "SRX24539433", "SRS21284310", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C9 TK39", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C9 TK39|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK39", "TK39", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C9-TK39_S27_R1_001.fastq.gz C9-TK39_S27_R2_001.fastq.gz", "fastq fastq", 2370365419.0, 11054395.0, "C9 TK39 S27 R1 001.fastq.gz", "0:107.19 1:107.24", "A:638716678;C:538512113;G:535138614;T:642111655;N:15886359", 107, 107, null, null, 638716678, 538512113, 535138614, 642111655, 15886359, "SRX24539433", "SRS21284310", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32110, "SRR29012736", "SRX24539432", "SRS21284309", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C8 TK38", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C8 TK38|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK38", "TK38", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C8-TK38_S26_R1_001.fastq.gz C8-TK38_S26_R2_001.fastq.gz", "fastq fastq", 2329920345.0, 10848811.0, "C8 TK38 S26 R1 001.fastq.gz", "0:107.36 1:107.40", "A:628958466;C:528866941;G:524557104;T:634765152;N:12772682", 107, 107, null, null, 628958466, 528866941, 524557104, 634765152, 12772682, "SRX24539432", "SRS21284309", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32111, "SRR29012737", "SRX24539431", "SRS21284308", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C7 TK37", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C7 TK37|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK37", "TK37", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C7-TK37_S25_R1_001.fastq.gz C7-TK37_S25_R2_001.fastq.gz", "fastq fastq", 1536459611.0, 7103135.0, "C7 TK37 S25 R1 001.fastq.gz", "0:108.14 1:108.16", "A:423368949;C:341783029;G:338600069;T:427083273;N:5624291", 108, 108, null, null, 423368949, 341783029, 338600069, 427083273, 5624291, "SRX24539431", "SRS21284308", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32112, "SRR29012738", "SRX24539430", "SRS21284307", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C5 TK35", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C5 TK35|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK35", "TK35", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C5-TK35_S24_R1_001.fastq.gz C5-TK35_S24_R2_001.fastq.gz", "fastq fastq", 2315322327.0, 10788443.0, "C5 TK35 S24 R1 001.fastq.gz", "0:107.29 1:107.33", "A:634261894;C:516670403;G:512433057;T:639505411;N:12451562", 107, 107, null, null, 634261894, 516670403, 512433057, 639505411, 12451562, "SRX24539430", "SRS21284307", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32113, "SRR29012739", "SRX24539429", "SRS21284306", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C4 TK34", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C4 TK34|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK34", "TK34", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C4-TK34_S23_R1_001.fastq.gz C4-TK34_S23_R2_001.fastq.gz", "fastq fastq", 2329888357.0, 11027349.0, "C4 TK34 S23 R1 001.fastq.gz", "0:105.60 1:105.68", "A:630397662;C:520059288;G:515161552;T:635983184;N:28286671", 105, 105, null, null, 630397662, 520059288, 515161552, 635983184, 28286671, "SRX24539429", "SRS21284306", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32114, "SRR29012740", "SRX24539428", "SRS21284305", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI8 TK8", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI8 TK8|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK8", "TK8", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI8-TK8_S7_R1_001.fastq.gz TI8-TK8_S7_R2_001.fastq.gz", "fastq fastq", 4277303861.0, 19878893.0, "TI8 TK8 S7 R1 001.fastq.gz", "0:107.58 1:107.59", "A:1152512692;C:974435535;G:968603233;T:1168971271;N:12781130", 107, 107, null, null, 1152512692, 974435535, 968603233, 1168971271, 12781130, "SRX24539428", "SRS21284305", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32115, "SRR29012741", "SRX24539427", "SRS21284304", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI7 TK7", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI7 TK7|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK7", "TK7", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI7-TK7_S6_R1_001.fastq.gz TI7-TK7_S6_R2_001.fastq.gz", "fastq fastq", 2617012040.0, 12126551.0, "TI7 TK7 S6 R1 001.fastq.gz", "0:107.90 1:107.91", "A:701588599;C:599589501;G:599522057;T:710050024;N:6261859", 107, 107, null, null, 701588599, 599589501, 599522057, 710050024, 6261859, "SRX24539427", "SRS21284304", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32116, "SRR29012742", "SRX24539426", "SRS21284303", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI6 TK6", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI6 TK6|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK6", "TK6", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI6-TK6_S5_R1_001.fastq.gz TI6-TK6_S5_R2_001.fastq.gz", "fastq fastq", 5193201377.0, 24181964.0, "TI6 TK6 S5 R1 001.fastq.gz", "0:107.36 1:107.40", "A:1427289221;C:1151717905;G:1140736875;T:1447664955;N:25792421", 107, 107, null, null, 1427289221, 1151717905, 1140736875, 1447664955, 25792421, "SRX24539426", "SRS21284303", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32117, "SRR29012743", "SRX24539425", "SRS21284302", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI5 TK5", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI5 TK5|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK5", "TK5", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI5-TK5_S4_R1_001.fastq.gz TI5-TK5_S4_R2_001.fastq.gz", "fastq fastq", 2048648256.0, 9524761.0, "TI5 TK5 S4 R1 001.fastq.gz", "0:107.53 1:107.56", "A:575845206;C:442981520;G:439368910;T:583602331;N:6850289", 107, 107, null, null, 575845206, 442981520, 439368910, 583602331, 6850289, "SRX24539425", "SRS21284302", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32118, "SRR29012744", "SRX24539424", "SRS21284301", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI4 TK4", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI4 TK4|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK4", "TK4", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI4-TK4_S3_R1_001.fastq.gz TI4-TK4_S3_R2_001.fastq.gz", "fastq fastq", 2858158305.0, 13330760.0, "TI4 TK4 S3 R1 001.fastq.gz", "0:107.18 1:107.22", "A:781642776;C:636257123;G:631858904;T:791480839;N:16918663", 107, 107, null, null, 781642776, 636257123, 631858904, 791480839, 16918663, "SRX24539424", "SRS21284301", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32119, "SRR29012745", "SRX24539423", "SRS21284300", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI3 TK3", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI3 TK3|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK3", "TK3", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI3-TK3_S2_R1_001.fastq.gz TI3-TK3_S2_R2_001.fastq.gz", "fastq fastq", 1566054292.0, 7297460.0, "TI3 TK3 S2 R1 001.fastq.gz", "0:107.29 1:107.31", "A:419497793;C:357426293;G:355453976;T:425654356;N:8021874", 107, 107, null, null, 419497793, 357426293, 355453976, 425654356, 8021874, "SRX24539423", "SRS21284300", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32120, "SRR29012746", "SRX24539422", "SRS21284299", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "TI2 TK2", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:TI2 TK2|treatment:TBI + ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK2", "TK2", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "TI2-TK2_S1_R1_001.fastq.gz TI2-TK2_S1_R2_001.fastq.gz", "fastq fastq", 1865518160.0, 8666289.0, "TI2 TK2 S1 R1 001.fastq.gz", "0:107.62 1:107.64", "A:510590407;C:415852163;G:413264662;T:517549106;N:8261822", 107, 107, null, null, 510590407, 415852163, 413264662, 517549106, 8261822, "SRX24539422", "SRS21284299", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32121, "SRR29012747", "SRX24539421", "SRS21284297", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C3 TK33", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C3 TK33|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK33", "TK33", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C3-TK33_S22_R1_001.fastq.gz C3-TK33_S22_R2_001.fastq.gz", "fastq fastq", 1780541368.0, 8253847.0, "C3 TK33 S22 R1 001.fastq.gz", "0:107.85 1:107.87", "A:513337117;C:371411358;G:365394452;T:521921928;N:8476513", 107, 107, null, null, 513337117, 371411358, 365394452, 521921928, 8476513, "SRX24539421", "SRS21284297", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "T", "T", "mates < 9% mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32122, "SRR29012748", "SRX24539420", "SRS21284298", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T7 TK30", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T7 TK30|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK30", "TK30", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T7-TK30_S19_R1_001.fastq.gz T7-TK30_S19_R2_001.fastq.gz", "fastq fastq", 1503037534.0, 7034919.0, "T7 TK30 S19 R1 001.fastq.gz", "0:106.80 1:106.85", "A:415333842;C:329932770;G:326603495;T:418836802;N:12330625", 106, 106, null, null, 415333842, 329932770, 326603495, 418836802, 12330625, "SRX24539420", "SRS21284298", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32123, "SRR29012749", "SRX24539419", "SRS21284296", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T6 TK29", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T6 TK29|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK29", "TK29", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T6-TK29_S18_R1_001.fastq.gz T6-TK29_S18_R2_001.fastq.gz", "fastq fastq", 2167995268.0, 10034734.0, "T6 TK29 S18 R1 001.fastq.gz", "0:108.03 1:108.02", "A:579041799;C:499138909;G:494478121;T:585849580;N:9486859", 108, 108, null, null, 579041799, 499138909, 494478121, 585849580, 9486859, "SRX24539419", "SRS21284296", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32124, "SRR29012750", "SRX24539418", "SRS21284295", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T5 TK28", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T5 TK28|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK28", "TK28", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T5-TK28_S17_R1_001.fastq.gz T5-TK28_S17_R2_001.fastq.gz", "fastq fastq", 2809544566.0, 13129662.0, "T5 TK28 S17 R1 001.fastq.gz", "0:106.97 1:107.01", "A:778118767;C:619618875;G:614045445;T:781068333;N:16693146", 106, 107, null, null, 778118767, 619618875, 614045445, 781068333, 16693146, "SRX24539418", "SRS21284295", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32125, "SRR29012751", "SRX24539417", "SRS21284294", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T4 TK27", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T4 TK27|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK27", "TK27", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T4-TK27_S16_R1_001.fastq.gz T4-TK27_S16_R2_001.fastq.gz", "fastq fastq", 2225863101.0, 10367681.0, "T4 TK27 S16 R1 001.fastq.gz", "0:107.33 1:107.36", "A:603151281;C:502052154;G:496942138;T:608675289;N:15042239", 107, 107, null, null, 603151281, 502052154, 496942138, 608675289, 15042239, "SRX24539417", "SRS21284294", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32126, "SRR29012752", "SRX24539416", "SRS21284293", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T3 TK26", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T3 TK26|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK26", "TK26", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T3-TK26_S15_R1_001.fastq.gz T3-TK26_S15_R2_001.fastq.gz", "fastq fastq", 1940446267.0, 9166557.0, "T3 TK26 S15 R1 001.fastq.gz", "0:105.81 1:105.87", "A:525291529;C:433681588;G:429227771;T:530538742;N:21706637", 105, 105, null, null, 525291529, 433681588, 429227771, 530538742, 21706637, "SRX24539416", "SRS21284293", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32127, "SRR29012753", "SRX24539415", "SRS21284292", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T2 TK23", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T2 TK23|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK23", "TK23", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T2-TK22_S13_R1_001.fastq.gz T2-TK22_S13_R2_001.fastq.gz", "fastq fastq", 1732117888.0, 8020234.0, "T2 TK22 S13 R1 001.fastq.gz", "0:107.97 1:107.99", "A:457940901;C:403905608;G:399758720;T:463834300;N:6678359", 107, 107, null, null, 457940901, 403905608, 399758720, 463834300, 6678359, "SRX24539415", "SRS21284292", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32128, "SRR29012754", "SRX24539414", "SRS21284291", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "T1 TK22", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:T1 TK22|treatment:TBI|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK22", "TK22", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "T1-TK23_S14_R1_001.fastq.gz T1-TK23_S14_R2_001.fastq.gz", "fastq fastq", 3331492486.0, 15432444.0, "T1 TK23 S14 R1 001.fastq.gz", "0:107.95 1:107.93", "A:868428457;C:786927841;G:785306451;T:875345180;N:15484557", 107, 107, null, null, 868428457, 786927841, 785306451, 875345180, 15484557, "SRX24539414", "SRS21284291", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32129, "SRR29012755", "SRX24539413", "SRS21284290", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "I6 TK16", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:I6 TK16|treatment:ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK16", "TK16", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "I6-TK16_S12_R1_001.fastq.gz I6-TK16_S12_R2_001.fastq.gz", "fastq fastq", 3714945017.0, 17207286.0, "I6 TK16 S12 R1 001.fastq.gz", "0:107.94 1:107.95", "A:1013736103;C:833395445;G:825731700;T:1025966376;N:16115393", 107, 107, null, null, 1013736103, 833395445, 825731700, 1025966376, 16115393, "SRX24539413", "SRS21284290", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32130, "SRR29012756", "SRX24539412", "SRS21284289", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "I5 TK15", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:I5 TK15|treatment:ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK15", "TK15", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "I5-TK15_S11_R1_001.fastq.gz I5-TK15_S11_R2_001.fastq.gz", "fastq fastq", 2794987343.0, 13014050.0, "I5 TK15 S11 R1 001.fastq.gz", "0:107.37 1:107.40", "A:774143942;C:614986331;G:609929626;T:782802382;N:13125062", 107, 107, null, null, 774143942, 614986331, 609929626, 782802382, 13125062, "SRX24539412", "SRS21284289", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32131, "SRR29012757", "SRX24539411", "SRS21284288", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "I4 TK14", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:I4 TK14|treatment:ISRIB|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK14", "TK14", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "I4-TK14_S10_R1_001.fastq.gz I4-TK14_S10_R2_001.fastq.gz", "fastq fastq", 1922427285.0, 8937092.0, "I4 TK14 S10 R1 001.fastq.gz", "0:107.54 1:107.57", "A:528449546;C:426814810;G:423703279;T:534207858;N:9251792", 107, 107, null, null, 528449546, 426814810, 423703279, 534207858, 9251792, "SRX24539411", "SRS21284288", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32132, "SRR29012758", "SRX24539410", "SRS21284287", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C2 TK32", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C2 TK32|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK32", "TK32", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C2-TK32_S21_R1_001.fastq.gz C2-TK32_S21_R2_001.fastq.gz", "fastq fastq", 3357957454.0, 15544937.0, "C2 TK32 S21 R1 001.fastq.gz", "0:108.00 1:108.01", "A:918342383;C:752111502;G:746458895;T:927695887;N:13348787", 108, 108, null, null, 918342383, 752111502, 746458895, 927695887, 13348787, "SRX24539410", "SRS21284287", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"], [32133, "SRR29012759", "SRX24539409", "SRS21284286", "SRP507393", "PRJNA1111146", "RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure", "PRJNA1111146", "Other", "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", null, null, null, null, "C1 TK31", null, "strain:Wild type|age:5 month|collection date:2023 08 20|geo loc name:Russia|sex:NA|tissue:brain|sample type:C1 TK31|treatment:Control|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C  traumatic brain injury TBI; T  ISRIB injection I TBI and ISRIB injection TI.", "TK31", "TK31", "RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA_oligo_dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP507393", null, null, "C1-TK31_S20_R1_001.fastq.gz C1-TK31_S20_R2_001.fastq.gz", "fastq fastq", 2442920945.0, 11344005.0, "C1 TK31 S20 R1 001.fastq.gz", "0:107.66 1:107.69", "A:668901972;C:544270967;G:539028537;T:676647377;N:14072092", 107, 107, null, null, 668901972, 544270967, 539028537, 676647377, 14072092, "SRX24539409", "SRS21284286", "SRA1865594", "Sirius University of Science and Technology|Genetics and Life Science", "Sirius University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "Russia", "2024-05-13", "Adult", "Adult", "Brain", "Nervous System"]], "truncated": false, 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