{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"cDNA\" and tissue_curation_coarse = \"Surface Structure\"", "rows": [[95, "DRR050167", "DRX045209", "DRS025834", "DRP003043", "PRJDB4416", "Transcriptome analysis in ES1 expressing rods of zebrafish", "DRP003043", "Transcriptome Analysis", "Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.", null, null, "Zebrafish rods expressing ES1 and EGFP", "ES1 3", "SAMD00044057", null, "sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod", null, null, null, null, null, null, null, null, "Ion Torrent PGM sequencing of SAMD00044057", "DRX045209", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent PGM", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003043", "Ion Torrent PGM sequencing of SAMD00044057", null, null, null, 371748120.0, 3469843.0, "DRR050167", "0:107.14", "A:107190409;C:79475572;G:83520360;T:101561779;N:0", 107, null, null, null, 107190409, 79475572, 83520360, 101561779, 0, "DRX045209", "DRS025834", "DRA004229", "OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.", "Osaka university", 1, 0.81026, null, 0.26715, null, 0.86953, null, 0.52321, null, 51, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2016-03-09", "Undetermined", "Undetermined", "Fin", "Surface Structure"], [96, "DRR050166", "DRX045208", "DRS025833", "DRP003043", "PRJDB4416", "Transcriptome analysis in ES1 expressing rods of zebrafish", "DRP003043", "Transcriptome Analysis", "Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.", null, null, "Zebrafish rods expressing ES1 and EGFP", "ES1 2", "SAMD00044056", null, "sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod", null, null, null, null, null, null, null, null, "Ion Torrent PGM sequencing of SAMD00044056", "DRX045208", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent PGM", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003043", "Ion Torrent PGM sequencing of SAMD00044056", null, null, null, 425549011.0, 3275261.0, "DRR050166", "0:129.93", "A:126640704;C:86415371;G:90822163;T:121670773;N:0", 129, null, null, null, 126640704, 86415371, 90822163, 121670773, 0, "DRX045208", "DRS025833", "DRA004229", "OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.", "Osaka university", 1, 0.80223, null, 0.31429, null, 0.85861, null, 0.5272, null, 57, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2016-03-09", "Undetermined", "Undetermined", "Fin", "Surface Structure"], [97, "DRR050165", "DRX045207", "DRS025832", "DRP003043", "PRJDB4416", "Transcriptome analysis in ES1 expressing rods of zebrafish", "DRP003043", "Transcriptome Analysis", "Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.", null, null, "Zebrafish rods expressing ES1 and EGFP", "ES1 1", "SAMD00044055", null, "sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod", null, null, null, null, null, null, null, null, "Ion Torrent PGM sequencing of SAMD00044055", "DRX045207", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent PGM", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003043", "Ion Torrent PGM sequencing of SAMD00044055", null, null, null, 584599765.0, 3941083.0, "DRR050165", "0:148.33", "A:164329030;C:129885620;G:136727379;T:153657736;N:0", 148, null, null, null, 164329030, 129885620, 136727379, 153657736, 0, "DRX045207", "DRS025832", "DRA004229", "OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.", "Osaka university", 1, 0.83769, null, 0.25395, null, 0.83116, null, 0.52784, null, 185, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2016-03-09", "Undetermined", "Undetermined", "Fin", "Surface Structure"], [98, "DRR050164", "DRX045206", "DRS025831", "DRP003043", "PRJDB4416", "Transcriptome analysis in ES1 expressing rods of zebrafish", "DRP003043", "Transcriptome Analysis", "Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.", null, null, "Zebrafish rods expressing EGFP", "EGFP 3", "SAMD00044054", null, "sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod", null, null, null, null, null, null, null, null, "Ion Torrent PGM sequencing of SAMD00044054", "DRX045206", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent PGM", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003043", "Ion Torrent PGM sequencing of SAMD00044054", null, null, null, 343014114.0, 3827762.0, "DRR050164", "0:89.61", "A:99421434;C:73070267;G:77738821;T:92783592;N:0", 89, null, null, null, 99421434, 73070267, 77738821, 92783592, 0, "DRX045206", "DRS025831", "DRA004229", "OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.", "Osaka university", 1, 0.78953, null, 0.25529, null, 0.87367, null, 0.52148, null, 24, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2016-03-09", "Undetermined", "Undetermined", "Fin", "Surface Structure"], [99, "DRR050163", "DRX045205", "DRS025830", "DRP003043", "PRJDB4416", "Transcriptome analysis in ES1 expressing rods of zebrafish", "DRP003043", "Transcriptome Analysis", "Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.", null, null, "Zebrafish rods expressing EGFP", "EGFP 2", "SAMD00044053", null, "sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod", null, null, null, null, null, null, null, null, "Ion Torrent PGM sequencing of SAMD00044053", "DRX045205", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent PGM", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003043", "Ion Torrent PGM sequencing of SAMD00044053", null, null, null, 533069427.0, 3824140.0, "DRR050163", "0:139.40", "A:152608173;C:113928273;G:120051739;T:146481242;N:0", 139, null, null, null, 152608173, 113928273, 120051739, 146481242, 0, "DRX045205", "DRS025830", "DRA004229", "OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.", "Osaka university", 1, 0.80412, null, 0.26768, null, 0.85338, null, 0.52255, null, 245, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2016-03-09", "Undetermined", "Undetermined", "Fin", "Surface Structure"], [100, "DRR050162", "DRX045204", "DRS025829", "DRP003043", "PRJDB4416", "Transcriptome analysis in ES1 expressing rods of zebrafish", "DRP003043", "Transcriptome Analysis", "Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.", null, null, "Zebrafish rods expressing EGFP", "EGFP 1", "SAMD00044052", null, "sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod", null, null, null, null, null, null, null, null, "Ion Torrent PGM sequencing of SAMD00044052", "DRX045204", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent PGM", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003043", "Ion Torrent PGM sequencing of SAMD00044052", null, null, null, 478262965.0, 4224064.0, "DRR050162", "0:113.22", "A:136348264;C:104872341;G:113114502;T:123927858;N:0", 113, null, null, null, 136348264, 104872341, 113114502, 123927858, 0, "DRX045204", "DRS025829", "DRA004229", "OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.", "Osaka university", 1, 0.86947, null, 0.29839, null, 0.83317, null, 0.51453, null, 80, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2016-03-09", "Undetermined", "Undetermined", "Fin", "Surface Structure"], [173, "DRR075397", "DRX069311", "DRS075492", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this  we established the novel gut tumor model in zebrafish  Danio rerio. This model develops tumor at an early stage of juvenile development  when zebrafish larvae are small <4mm  enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver  the gut/gut tumor  and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor  contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The remaining part of body of control fish 7dpf", "Control body", "SAMD00065411", null, "sample name:1 control body 150701 Hiseq3A l3 017|tissue type:Body", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065411", "DRX069311", "Control body", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065411", null, null, null, 2653100352.0, 73697232.0, "DRR075397", "0:36", "A:656791658;C:620507513;G:625038612;T:750671135;N:91434", 36, null, null, null, 656791658, 620507513, 625038612, 750671135, 91434, "DRX069311", "DRS075492", "DRA005199", "ATR|The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", "The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.89666, null, 0.15749, null, 0.67048, null, 0.47755, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Trunk", "Surface Structure"], [1343, "ERR1821990", "ERX1884482", "ERS1343316", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 7", "SAMEA4431867", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#96", "DN465656V:H12", "Illumina sequencing of library DN465656V:H12  constructed from sample accession ERS1343316 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GTCTTGGC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#96.cram", "cram", 345517950.0, 2303453.0, "SC RUN 21115 7#96", "0:75 1:75", "A:91753293;C:80579294;G:80049976;T:93111505;N:23882", 75, 75, null, null, 91753293, 80579294, 80049976, 93111505, 23882, "ERX1884482", "ERS1343316", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9565, 0.95935, 0.12705, 0.1217, 0.68665, 0.68745, 0.48707, 0.48858, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1344, "ERR1821989", "ERX1884481", "ERS1343315", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 11", "SAMEA4431866", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#95", "DN465656V:G12", "Illumina sequencing of library DN465656V:G12  constructed from sample accession ERS1343315 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GATTCATC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#95.cram", "cram", 364024650.0, 2426831.0, "SC RUN 21115 7#95", "0:75 1:75", "A:95916965;C:85606514;G:85201716;T:97272921;N:26534", 75, 75, null, null, 95916965, 85606514, 85201716, 97272921, 26534, "ERX1884481", "ERS1343315", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95308, 0.9573, 0.12802, 0.12464, 0.68114, 0.6817, 0.4667, 0.47686, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1345, "ERR1821988", "ERX1884480", "ERS1343314", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 10", "SAMEA4431865", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#94", "DN465656V:F12", "Illumina sequencing of library DN465656V:F12  constructed from sample accession ERS1343314 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GCTAACTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#94.cram", "cram", 309343200.0, 2062288.0, "SC RUN 21115 7#94", "0:75 1:75", "A:81870720;C:72361549;G:72008899;T:83081311;N:20721", 75, 75, null, null, 81870720, 72361549, 72008899, 83081311, 20721, "ERX1884480", "ERS1343314", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95466, 0.95821, 0.12781, 0.12327, 0.68316, 0.6827, 0.47554, 0.473, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1346, "ERR1821987", "ERX1884479", "ERS1343313", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 8", "SAMEA4431864", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:14Z|INSDC status:public|Submitter Id:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#93", "DN465656V:E12", "Illumina sequencing of library DN465656V:E12  constructed from sample accession ERS1343313 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GCACTGTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#93.cram", "cram", 351364950.0, 2342433.0, "SC RUN 21115 7#93", "0:75 1:75", "A:90109745;C:84916907;G:84829295;T:91484844;N:24159", 75, 75, null, null, 90109745, 84916907, 84829295, 91484844, 24159, "ERX1884479", "ERS1343313", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96367, 0.96715, 0.12608, 0.12301, 0.69122, 0.69199, 0.4811, 0.47937, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1349, "ERR1821984", "ERX1884476", "ERS1343310", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 23", "SAMEA4431861", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:11Z|INSDC status:public|Submitter Id:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GTAAGGTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#84.cram", "cram", 343587900.0, 2290586.0, "SC RUN 21115 7#84", "0:75 1:75", "A:88614226;C:82509443;G:82384006;T:90057117;N:23108", 75, 75, null, null, 88614226, 82509443, 82384006, 90057117, 23108, "ERX1884470", "ERS1343304", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95996, 0.9639, 0.12325, 0.11918, 0.6872, 0.68838, 0.47479, 0.4727, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1357, "ERR1821976", "ERX1884468", "ERS1343302", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 12", "SAMEA4431853", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence GGTCGTGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#74.cram", "cram", 336626850.0, 2244179.0, "SC RUN 21115 7#74", "0:75 1:75", "A:87825164;C:79779356;G:79631566;T:89367083;N:23681", 75, 75, null, null, 87825164, 79779356, 79631566, 89367083, 23681, "ERX1884460", "ERS1343294", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95683, 0.96064, 0.13119, 0.12727, 0.67892, 0.67955, 0.47005, 0.46207, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1366, "ERR1821967", "ERX1884459", "ERS1343293", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 7", "SAMEA4431844", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#71", "DN465656V:G9", "Illumina sequencing of library DN465656V:G9  constructed from sample accession ERS1343291 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  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This submission includes reads tagged with the sequence TGCGTGAA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#68.cram", "cram", 331162800.0, 2207752.0, "SC RUN 21115 7#68", "0:75 1:75", "A:85794412;C:79101880;G:78952864;T:87291049;N:22595", 75, 75, null, null, 85794412, 79101880, 78952864, 87291049, 22595, "ERX1884454", "ERS1343288", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9592, 0.96321, 0.13082, 0.12596, 0.68038, 0.68081, 0.47174, 0.46616, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1372, "ERR1821961", "ERX1884453", "ERS1343287", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 3", "SAMEA4431838", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#67", "DN465656V:C9", "Illumina sequencing of library DN465656V:C9  constructed from sample accession ERS1343287 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TACCACCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#67.cram", "cram", 331205700.0, 2208038.0, "SC RUN 21115 7#67", "0:75 1:75", "A:86616306;C:78329975;G:78118373;T:88118620;N:22426", 75, 75, null, null, 86616306, 78329975, 78118373, 88118620, 22426, "ERX1884453", "ERS1343287", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95751, 0.96214, 0.12537, 0.1204, 0.68878, 0.68858, 0.48537, 0.4863, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1373, "ERR1821960", "ERX1884452", "ERS1343286", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 10", "SAMEA4431837", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:51Z|INSDC status:public|Submitter Id:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TGAAGCCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#66.cram", "cram", 360167100.0, 2401114.0, "SC RUN 21115 7#66", "0:75 1:75", "A:93582225;C:85848013;G:85581536;T:95129867;N:25459", 75, 75, null, null, 93582225, 85848013, 85581536, 95129867, 25459, "ERX1884452", "ERS1343286", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95821, 0.96111, 0.11971, 0.11519, 0.68724, 0.6868, 0.48254, 0.48898, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1375, "ERR1821958", "ERX1884450", "ERS1343284", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 16", "SAMEA4431835", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#64", "DN465656V:H8", "Illumina sequencing of library DN465656V:H8  constructed from sample accession ERS1343284 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCTCTTCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#64.cram", "cram", 336721200.0, 2244808.0, "SC RUN 21115 7#64", "0:75 1:75", "A:86735439;C:80977534;G:80814443;T:88171542;N:22242", 75, 75, null, null, 86735439, 80977534, 80814443, 88171542, 22242, "ERX1884450", "ERS1343284", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96051, 0.96429, 0.12669, 0.12257, 0.69051, 0.69016, 0.46539, 0.46826, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1376, "ERR1821957", "ERX1884449", "ERS1343283", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 6", "SAMEA4431834", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TGTGAAGA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#63.cram", "cram", 369606300.0, 2464042.0, "SC RUN 21115 7#63", "0:75 1:75", "A:95298069;C:88862861;G:88512446;T:96907144;N:25780", 75, 75, null, null, 95298069, 88862861, 88512446, 96907144, 25780, "ERX1884449", "ERS1343283", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96106, 0.96546, 0.11794, 0.11434, 0.69753, 0.69858, 0.48929, 0.48595, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1377, "ERR1821956", "ERX1884448", "ERS1343282", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 21", "SAMEA4431833", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:48Z|INSDC status:public|Submitter Id:8913e840 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8913e840 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#62", "DN465656V:F8", "Illumina sequencing of library DN465656V:F8  constructed from sample accession ERS1343282 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGACGGA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#62.cram", "cram", 318946500.0, 2126310.0, "SC RUN 21115 7#62", "0:75 1:75", "A:83294172;C:75546488;G:75378597;T:84706371;N:20872", 75, 75, null, null, 83294172, 75546488, 75378597, 84706371, 20872, "ERX1884448", "ERS1343282", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95837, 0.96123, 0.13023, 0.12538, 0.6813, 0.68189, 0.47495, 0.47596, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1378, "ERR1821955", "ERX1884447", "ERS1343281", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 21", "SAMEA4431832", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:47Z|INSDC status:public|Submitter Id:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#61", "DN465656V:E8", "Illumina sequencing of library DN465656V:E8  constructed from sample accession ERS1343281 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  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This submission includes reads tagged with the sequence TGACAGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#58.cram", "cram", 328086150.0, 2187241.0, "SC RUN 21115 7#58", "0:75 1:75", "A:85080319;C:78326244;G:78231894;T:86424790;N:22903", 75, 75, null, null, 85080319, 78326244, 78231894, 86424790, 22903, "ERX1884444", "ERS1343278", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95723, 0.96059, 0.1249, 0.12125, 0.67438, 0.67363, 0.47214, 0.47571, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1382, "ERR1821951", "ERX1884443", "ERS1343277", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 4", "SAMEA4431828", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#57", "DN465656V:A8", "Illumina sequencing of library DN465656V:A8  constructed from sample accession ERS1343277 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCTACGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#57.cram", "cram", 342888600.0, 2285924.0, "SC RUN 21115 7#57", "0:75 1:75", "A:89589944;C:81204257;G:80998953;T:91071349;N:24097", 75, 75, null, null, 89589944, 81204257, 80998953, 91071349, 24097, "ERX1884443", "ERS1343277", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95568, 0.95951, 0.11882, 0.11586, 0.68071, 0.68083, 0.47558, 0.47205, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1385, "ERR1821948", "ERX1884440", "ERS1343274", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 5", "SAMEA4431825", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TGTTCTCC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#54.cram", "cram", 311123100.0, 2074154.0, "SC RUN 21115 7#54", "0:75 1:75", "A:80977085;C:73956503;G:73826166;T:82342166;N:21180", 75, 75, null, null, 80977085, 73956503, 73826166, 82342166, 21180, "ERX1884440", "ERS1343274", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95727, 0.96199, 0.126, 0.12217, 0.68071, 0.68073, 0.48334, 0.48234, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1388, "ERR1821945", "ERX1884437", "ERS1343271", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 22", "SAMEA4431822", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TTACTCGC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#51.cram", "cram", 340949700.0, 2272998.0, "SC RUN 21115 7#51", "0:75 1:75", "A:88760980;C:81019440;G:80840504;T:90302998;N:25778", 75, 75, null, null, 88760980, 81019440, 80840504, 90302998, 25778, "ERX1884437", "ERS1343271", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95837, 0.96259, 0.11867, 0.11452, 0.69337, 0.69382, 0.48444, 0.4906, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1393, "ERR1821940", "ERX1884432", "ERS1343266", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 18", "SAMEA4431817", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:34Z|INSDC status:public|Submitter Id:8888e650 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#46", "DN465656V:F6", "Illumina sequencing of library DN465656V:F6  constructed from sample accession ERS1343266 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCAGATTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#46.cram", "cram", 330055050.0, 2200367.0, "SC RUN 21115 7#46", "0:75 1:75", "A:85481444;C:78898716;G:78797938;T:86854377;N:22575", 75, 75, null, null, 85481444, 78898716, 78797938, 86854377, 22575, "ERX1884432", "ERS1343266", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95991, 0.96358, 0.11884, 0.11578, 0.68284, 0.68434, 0.47867, 0.48444, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1394, "ERR1821939", "ERX1884431", "ERS1343265", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 17", "SAMEA4431816", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#45", "DN465656V:E6", "Illumina sequencing of library DN465656V:E6  constructed from sample accession ERS1343265 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TATGCCAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#45.cram", "cram", 345969900.0, 2306466.0, "SC RUN 21115 7#45", "0:75 1:75", "A:90927344;C:81421201;G:81202158;T:92396072;N:23125", 75, 75, null, null, 90927344, 81421201, 81202158, 92396072, 23125, "ERX1884431", "ERS1343265", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95523, 0.9594, 0.12879, 0.12441, 0.68371, 0.68245, 0.48658, 0.47772, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1398, "ERR1821935", "ERX1884427", "ERS1343261", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 17", "SAMEA4431812", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#41", "DN465656V:A6", "Illumina sequencing of library DN465656V:A6  constructed from sample accession ERS1343261 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCCAGTCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#41.cram", "cram", 328126350.0, 2187509.0, "SC RUN 21115 7#41", "0:75 1:75", "A:84642756;C:78721382;G:78649568;T:86088943;N:23701", 75, 75, null, null, 84642756, 78721382, 78649568, 86088943, 23701, "ERX1884427", "ERS1343261", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95948, 0.9638, 0.13772, 0.13476, 0.67886, 0.67923, 0.4859, 0.47157, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1403, "ERR1821930", "ERX1884422", "ERS1343256", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 14", "SAMEA4431807", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#36", "DN465656V:D5", "Illumina sequencing of library DN465656V:D5  constructed from sample accession ERS1343256 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGAACTGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#36.cram", "cram", 339549600.0, 2263664.0, "SC RUN 21115 7#36", "0:75 1:75", "A:86935886;C:82184115;G:82019061;T:88386477;N:24061", 75, 75, null, null, 86935886, 82184115, 82019061, 88386477, 24061, "ERX1884422", "ERS1343256", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9625, 0.96656, 0.10814, 0.10457, 0.69077, 0.69104, 0.48142, 0.47703, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1405, "ERR1821928", "ERX1884420", "ERS1343254", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 6", "SAMEA4431805", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#34", "DN465656V:B5", "Illumina sequencing of library DN465656V:B5  constructed from sample accession ERS1343254 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAACGCTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#34.cram", "cram", 340225350.0, 2268169.0, "SC RUN 21115 7#34", "0:75 1:75", "A:89140873;C:80359815;G:80091727;T:90609762;N:23173", 75, 75, null, null, 89140873, 80359815, 80091727, 90609762, 23173, "ERX1884420", "ERS1343254", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95688, 0.96041, 0.11971, 0.11541, 0.68674, 0.68718, 0.47042, 0.47524, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1408, "ERR1821925", "ERX1884417", "ERS1343251", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 19", "SAMEA4431802", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TAGTCTTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#31.cram", "cram", 338695950.0, 2257973.0, "SC RUN 21115 7#31", "0:75 1:75", "A:88637707;C:80089055;G:79880255;T:90066042;N:22891", 75, 75, null, null, 88637707, 80089055, 79880255, 90066042, 22891, "ERX1884417", "ERS1343251", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95645, 0.96094, 0.13554, 0.1313, 0.67907, 0.68008, 0.4806, 0.48064, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1410, "ERR1821923", "ERX1884415", "ERS1343249", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 1", "SAMEA4431800", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#29", "DN465656V:E4", "Illumina sequencing of library DN465656V:E4  constructed from sample accession ERS1343249 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCCTCAAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#29.cram", "cram", 366322350.0, 2442149.0, "SC RUN 21115 7#29", "0:75 1:75", "A:94017056;C:88415257;G:88329033;T:95536586;N:24418", 75, 75, null, null, 94017056, 88415257, 88329033, 95536586, 24418, "ERX1884415", "ERS1343249", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95967, 0.96398, 0.12878, 0.12562, 0.6826, 0.68227, 0.47576, 0.4828, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1411, "ERR1821922", "ERX1884414", "ERS1343248", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 9", "SAMEA4431799", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#28", "DN465656V:D4", "Illumina sequencing of library DN465656V:D4  constructed from sample accession ERS1343248 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TACAGGAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#28.cram", "cram", 364518600.0, 2430124.0, "SC RUN 21115 7#28", "0:75 1:75", "A:95092411;C:86578092;G:86167378;T:96656365;N:24354", 75, 75, null, null, 95092411, 86578092, 86167378, 96656365, 24354, "ERX1884414", "ERS1343248", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95832, 0.96248, 0.12173, 0.1165, 0.68927, 0.69014, 0.48572, 0.48471, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1412, "ERR1821921", "ERX1884413", "ERS1343247", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 13", "SAMEA4431798", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#27", "DN465656V:C4", "Illumina sequencing of library DN465656V:C4  constructed from sample accession ERS1343247 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGTGACT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#27.cram", "cram", 354481650.0, 2363211.0, "SC RUN 21115 7#27", "0:75 1:75", "A:91732533;C:84785566;G:84645818;T:93293392;N:24341", 75, 75, null, null, 91732533, 84785566, 84645818, 93293392, 24341, "ERX1884413", "ERS1343247", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96029, 0.96432, 0.1188, 0.11522, 0.68047, 0.6818, 0.4676, 0.46541, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1413, "ERR1821920", "ERX1884412", "ERS1343246", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 15", "SAMEA4431797", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#26", "DN465656V:B4", "Illumina sequencing of library DN465656V:B4  constructed from sample accession ERS1343246 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTCCTGCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#26.cram", "cram", 331984500.0, 2213230.0, "SC RUN 21115 7#26", "0:75 1:75", "A:86348725;C:78998309;G:78858826;T:87756035;N:22605", 75, 75, null, null, 86348725, 78998309, 78858826, 87756035, 22605, "ERX1884412", "ERS1343246", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95887, 0.96214, 0.11962, 0.11489, 0.6815, 0.68148, 0.47571, 0.47326, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1414, "ERR1821919", "ERX1884411", "ERS1343245", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 20", "SAMEA4431796", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#25", "DN465656V:A4", "Illumina sequencing of library DN465656V:A4  constructed from sample accession ERS1343245 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGCGATCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#25.cram", "cram", 320720700.0, 2138138.0, "SC RUN 21115 7#25", "0:75 1:75", "A:84088856;C:75649711;G:75458666;T:85500924;N:22543", 75, 75, null, null, 84088856, 75649711, 75458666, 85500924, 22543, "ERX1884411", "ERS1343245", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95593, 0.95888, 0.12916, 0.12423, 0.68448, 0.68294, 0.48286, 0.48538, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1415, "ERR1821918", "ERX1884410", "ERS1343244", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 22", "SAMEA4431795", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#24", "DN465656V:H3", "Illumina sequencing of library DN465656V:H3  constructed from sample accession ERS1343244 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  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This submission includes reads tagged with the sequence TGTACCTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#17.cram", "cram", 265689750.0, 1771265.0, "SC RUN 21115 7#17", "0:75 1:75", "A:69761602;C:62539487;G:62444788;T:70924883;N:18990", 75, 75, null, null, 69761602, 62539487, 62444788, 70924883, 18990, "ERX1884403", "ERS1343237", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95599, 0.95983, 0.12869, 0.12327, 0.67925, 0.68045, 0.46923, 0.46159, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1425, "ERR1821908", "ERX1884400", "ERS1343234", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 8", "SAMEA4431785", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431785|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:07Z|INSDC status:public|Submitter Id:878ab030 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GGCTACAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#11.cram", "cram", 320521950.0, 2136813.0, "SC RUN 21115 7#11", "0:75 1:75", "A:84018705;C:75695161;G:75424320;T:85360772;N:22992", 75, 75, null, null, 84018705, 75695161, 75424320, 85360772, 22992, "ERX1884397", "ERS1343231", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95781, 0.96265, 0.11883, 0.11449, 0.68613, 0.68724, 0.48729, 0.48412, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1429, "ERR1821904", "ERX1884396", "ERS1343230", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 19", "SAMEA4431781", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431781|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:04Z|INSDC status:public|Submitter Id:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TAGCTTGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#10.cram", "cram", 341330550.0, 2275537.0, "SC RUN 21115 7#10", "0:75 1:75", "A:88881827;C:81100577;G:80952610;T:90372489;N:23047", 75, 75, null, null, 88881827, 81100577, 80952610, 90372489, 23047, "ERX1884396", "ERS1343230", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95807, 0.9608, 0.13472, 0.13072, 0.67943, 0.68164, 0.47486, 0.47528, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1434, "ERR1821899", "ERX1884391", "ERS1343225", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 23", "SAMEA4431776", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:41:59Z|INSDC status:public|Submitter Id:87436e00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87436e00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#5", "DN465656V:E1", "Illumina sequencing of library DN465656V:E1  constructed from sample accession ERS1343225 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  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This submission includes reads tagged with the sequence CGATGTTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#2.cram", "cram", 293577000.0, 1957180.0, "SC RUN 21115 7#2", "0:75 1:75", "A:77750011;C:68531930;G:68273993;T:79000857;N:20209", 75, 75, null, null, 77750011, 68531930, 68273993, 79000857, 20209, "ERX1884388", "ERS1343222", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95171, 0.95589, 0.13816, 0.13514, 0.67629, 0.67547, 0.47871, 0.46646, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1438, "ERR1821895", "ERX1884387", "ERS1343221", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 5", "SAMEA4431772", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431772|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:55Z|INSDC status:public|Submitter Id:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence ATCACGTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#1.cram", "cram", 312615300.0, 2084102.0, "SC RUN 21115 7#1", "0:75 1:75", "A:82010578;C:73778620;G:73476362;T:83328293;N:21447", 75, 75, null, null, 82010578, 73778620, 73476362, 83328293, 21447, "ERX1884387", "ERS1343221", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95424, 0.95872, 0.13615, 0.13291, 0.67848, 0.67821, 0.48083, 0.47719, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1439, "ERR1821894", "ERX1884386", "ERS1343316", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 7", "SAMEA4431867", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence GTCTTGGC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#96.cram", "cram", 345081000.0, 2300540.0, "SC RUN 21115 6#96", "0:75 1:75", "A:91644012;C:80503625;G:79946465;T:92962207;N:24691", 75, 75, null, null, 91644012, 80503625, 79946465, 92962207, 24691, "ERX1884386", "ERS1343316", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95678, 0.95935, 0.12884, 0.12331, 0.68917, 0.68915, 0.49222, 0.48959, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1440, "ERR1821893", "ERX1884385", "ERS1343315", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 11", "SAMEA4431866", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GATTCATC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#95.cram", "cram", 363186300.0, 2421242.0, "SC RUN 21115 6#95", "0:75 1:75", "A:95668966;C:85460566;G:85017029;T:97014320;N:25419", 75, 75, null, null, 95668966, 85460566, 85017029, 97014320, 25419, "ERX1884385", "ERS1343315", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9539, 0.95767, 0.13011, 0.12612, 0.68091, 0.68193, 0.47262, 0.45237, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1441, "ERR1821892", "ERX1884384", "ERS1343314", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 10", "SAMEA4431865", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence GCTAACTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#94.cram", "cram", 309097650.0, 2060651.0, "SC RUN 21115 6#94", "0:75 1:75", "A:81793149;C:72286091;G:71961662;T:83034568;N:22180", 75, 75, null, null, 81793149, 72286091, 71961662, 83034568, 22180, "ERX1884384", "ERS1343314", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95476, 0.95776, 0.12772, 0.12255, 0.68357, 0.68359, 0.47391, 0.47015, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1442, "ERR1821891", "ERX1884383", "ERS1343313", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 8", "SAMEA4431864", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:14Z|INSDC status:public|Submitter Id:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#90", "DN465656V:B12", "Illumina sequencing of library DN465656V:B12  constructed from sample accession ERS1343310 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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This submission includes reads tagged with the sequence GTAAGGTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#84.cram", "cram", 342419700.0, 2282798.0, "SC RUN 21115 6#84", "0:75 1:75", "A:88339298;C:82188635;G:82099822;T:89767401;N:24544", 75, 75, null, null, 88339298, 82188635, 82099822, 89767401, 24544, "ERX1884374", "ERS1343304", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9594, 0.9639, 0.12263, 0.11953, 0.6874, 0.6882, 0.47923, 0.47477, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1453, "ERR1821880", "ERX1884372", "ERS1343302", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 12", "SAMEA4431853", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#82", "DN465656V:B11", "Illumina sequencing of library DN465656V:B11  constructed from sample accession ERS1343302 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GAGCCAAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#82.cram", "cram", 339271800.0, 2261812.0, "SC RUN 21115 6#82", "0:75 1:75", "A:89689630;C:79346388;G:78967007;T:91244790;N:23985", 75, 75, null, null, 89689630, 79346388, 78967007, 91244790, 23985, "ERX1884372", "ERS1343302", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95414, 0.958, 0.12425, 0.11988, 0.68483, 0.6844, 0.47108, 0.4771, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1459, "ERR1821874", "ERX1884366", "ERS1343296", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 12", "SAMEA4431847", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:59Z|INSDC status:public|Submitter Id:89901d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GTACATCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#76.cram", "cram", 318161250.0, 2121075.0, "SC RUN 21115 6#76", "0:75 1:75", "A:83280615;C:75193091;G:74975360;T:84689631;N:22553", 75, 75, null, null, 83280615, 75193091, 74975360, 84689631, 22553, "ERX1884366", "ERS1343296", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.956, 0.95977, 0.1314, 0.12784, 0.67462, 0.67566, 0.47969, 0.47717, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1461, "ERR1821872", "ERX1884364", "ERS1343294", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 20", "SAMEA4431845", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:58Z|INSDC status:public|Submitter Id:897f0620 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GGTCGTGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#74.cram", "cram", 335698050.0, 2237987.0, "SC RUN 21115 6#74", "0:75 1:75", "A:87573533;C:79562687;G:79433179;T:89103801;N:24850", 75, 75, null, null, 87573533, 79562687, 79433179, 89103801, 24850, "ERX1884364", "ERS1343294", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95677, 0.96007, 0.13015, 0.12574, 0.67852, 0.67927, 0.4713, 0.46763, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1462, "ERR1821871", "ERX1884363", "ERS1343293", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 7", "SAMEA4431844", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#71", "DN465656V:G9", "Illumina sequencing of library DN465656V:G9  constructed from sample accession ERS1343291 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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This submission includes reads tagged with the sequence TGCGTGAA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#68.cram", "cram", 330650550.0, 2204337.0, "SC RUN 21115 6#68", "0:75 1:75", "A:85657332;C:79003383;G:78841297;T:87126221;N:22317", 75, 75, null, null, 85657332, 79003383, 78841297, 87126221, 22317, "ERX1884358", "ERS1343288", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96025, 0.96277, 0.13225, 0.12688, 0.68028, 0.68, 0.46939, 0.47625, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1468, "ERR1821865", "ERX1884357", "ERS1343287", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 3", "SAMEA4431838", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TGAAGCCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#66.cram", "cram", 359585700.0, 2397238.0, "SC RUN 21115 6#66", "0:75 1:75", "A:93442812;C:85708039;G:85443356;T:94966507;N:24986", 75, 75, null, null, 93442812, 85708039, 85443356, 94966507, 24986, "ERX1884356", "ERS1343286", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95805, 0.96156, 0.11867, 0.11431, 0.68497, 0.68649, 0.48236, 0.48397, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1471, "ERR1821862", "ERX1884354", "ERS1343284", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 16", "SAMEA4431835", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#64", "DN465656V:H8", "Illumina sequencing of library DN465656V:H8  constructed from sample accession ERS1343284 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCTCTTCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#64.cram", "cram", 336217950.0, 2241453.0, "SC RUN 21115 6#64", "0:75 1:75", "A:86600924;C:80885795;G:80696123;T:88010661;N:24447", 75, 75, null, null, 86600924, 80885795, 80696123, 88010661, 24447, "ERX1884354", "ERS1343284", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96149, 0.96565, 0.12626, 0.12215, 0.68901, 0.68874, 0.46419, 0.46684, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1472, "ERR1821861", "ERX1884353", "ERS1343283", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 6", "SAMEA4431834", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TGTGAAGA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#63.cram", "cram", 368963550.0, 2459757.0, "SC RUN 21115 6#63", "0:75 1:75", "A:95129168;C:88718452;G:88365055;T:96724664;N:26211", 75, 75, null, null, 95129168, 88718452, 88365055, 96724664, 26211, "ERX1884353", "ERS1343283", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96203, 0.96557, 0.11674, 0.11296, 0.69627, 0.69814, 0.49195, 0.49081, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1473, "ERR1821860", "ERX1884352", "ERS1343282", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 21", "SAMEA4431833", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:48Z|INSDC status:public|Submitter Id:8913e840 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8913e840 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#62", "DN465656V:F8", "Illumina sequencing of library DN465656V:F8  constructed from sample accession ERS1343282 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGACGGA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#62.cram", "cram", 318504750.0, 2123365.0, "SC RUN 21115 6#62", "0:75 1:75", "A:83162262;C:75443190;G:75269735;T:84606652;N:22911", 75, 75, null, null, 83162262, 75443190, 75269735, 84606652, 22911, "ERX1884352", "ERS1343282", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95728, 0.96167, 0.13029, 0.12585, 0.68185, 0.68249, 0.46803, 0.47333, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1474, "ERR1821859", "ERX1884351", "ERS1343281", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 21", "SAMEA4431832", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:47Z|INSDC status:public|Submitter Id:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#61", "DN465656V:E8", "Illumina sequencing of library DN465656V:E8  constructed from sample accession ERS1343281 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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This submission includes reads tagged with the sequence TGACAGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#58.cram", "cram", 327769050.0, 2185127.0, "SC RUN 21115 6#58", "0:75 1:75", "A:85001515;C:78219047;G:78171081;T:86354498;N:22909", 75, 75, null, null, 85001515, 78219047, 78171081, 86354498, 22909, "ERX1884348", "ERS1343278", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95768, 0.95988, 0.1234, 0.12033, 0.67347, 0.67436, 0.47371, 0.4761, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1478, "ERR1821855", "ERX1884347", "ERS1343277", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 4", "SAMEA4431828", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TCTACGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#57.cram", "cram", 342609600.0, 2284064.0, "SC RUN 21115 6#57", "0:75 1:75", "A:89501767;C:81150340;G:80928348;T:91005533;N:23612", 75, 75, null, null, 89501767, 81150340, 80928348, 91005533, 23612, "ERX1884347", "ERS1343277", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95666, 0.95947, 0.11917, 0.11555, 0.68097, 0.68097, 0.4724, 0.47141, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1481, "ERR1821852", "ERX1884344", "ERS1343274", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 5", "SAMEA4431825", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TGTTCTCC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#54.cram", "cram", 310826550.0, 2072177.0, "SC RUN 21115 6#54", "0:75 1:75", "A:80875492;C:73882701;G:73778637;T:82268382;N:21338", 75, 75, null, null, 80875492, 73882701, 73778637, 82268382, 21338, "ERX1884344", "ERS1343274", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95749, 0.96179, 0.12424, 0.12003, 0.67967, 0.67982, 0.48091, 0.47551, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1484, "ERR1821849", "ERX1884341", "ERS1343271", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 22", "SAMEA4431822", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TTACTCGC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#51.cram", "cram", 340740000.0, 2271600.0, "SC RUN 21115 6#51", "0:75 1:75", "A:88712447;C:80990669;G:80780022;T:90232904;N:23958", 75, 75, null, null, 88712447, 80990669, 80780022, 90232904, 23958, "ERX1884341", "ERS1343271", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95899, 0.96217, 0.11893, 0.11387, 0.69384, 0.69343, 0.48492, 0.49008, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1489, "ERR1821844", "ERX1884336", "ERS1343266", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 18", "SAMEA4431817", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:34Z|INSDC status:public|Submitter Id:8888e650 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#46", "DN465656V:F6", "Illumina sequencing of library DN465656V:F6  constructed from sample accession ERS1343266 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCAGATTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#46.cram", "cram", 329276550.0, 2195177.0, "SC RUN 21115 6#46", "0:75 1:75", "A:85256355;C:78719080;G:78638627;T:86638984;N:23504", 75, 75, null, null, 85256355, 78719080, 78638627, 86638984, 23504, "ERX1884336", "ERS1343266", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96004, 0.96392, 0.11998, 0.11601, 0.68304, 0.68333, 0.47754, 0.47869, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1490, "ERR1821843", "ERX1884335", "ERS1343265", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 17", "SAMEA4431816", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#45", "DN465656V:E6", "Illumina sequencing of library DN465656V:E6  constructed from sample accession ERS1343265 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TATGCCAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#45.cram", "cram", 345276150.0, 2301841.0, "SC RUN 21115 6#45", "0:75 1:75", "A:90759334;C:81268319;G:81034519;T:92190083;N:23895", 75, 75, null, null, 90759334, 81268319, 81034519, 92190083, 23895, "ERX1884335", "ERS1343265", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95671, 0.96105, 0.12926, 0.12471, 0.68268, 0.68254, 0.48751, 0.47819, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1494, "ERR1821839", "ERX1884331", "ERS1343261", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 17", "SAMEA4431812", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#41", "DN465656V:A6", "Illumina sequencing of library DN465656V:A6  constructed from sample accession ERS1343261 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCCAGTCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#41.cram", "cram", 328054650.0, 2187031.0, "SC RUN 21115 6#41", "0:75 1:75", "A:84612234;C:78682169;G:78656004;T:86082189;N:22054", 75, 75, null, null, 84612234, 78682169, 78656004, 86082189, 22054, "ERX1884331", "ERS1343261", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95963, 0.96285, 0.13796, 0.13432, 0.67925, 0.67921, 0.48858, 0.48254, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1499, "ERR1821834", "ERX1884326", "ERS1343256", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 14", "SAMEA4431807", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#36", "DN465656V:D5", "Illumina sequencing of library DN465656V:D5  constructed from sample accession ERS1343256 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#34", "DN465656V:B5", "Illumina sequencing of library DN465656V:B5  constructed from sample accession ERS1343254 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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This submission includes reads tagged with the sequence TAGTCTTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#31.cram", "cram", 338676000.0, 2257840.0, "SC RUN 21115 6#31", "0:75 1:75", "A:88628796;C:80095770;G:79870942;T:90056055;N:24437", 75, 75, null, null, 88628796, 80095770, 79870942, 90056055, 24437, "ERX1884321", "ERS1343251", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95695, 0.96014, 0.13495, 0.13039, 0.67866, 0.67878, 0.47871, 0.47791, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1506, "ERR1821827", "ERX1884319", "ERS1343249", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 1", "SAMEA4431800", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TCCTCAAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#29.cram", "cram", 366013650.0, 2440091.0, "SC RUN 21115 6#29", "0:75 1:75", "A:93921820;C:88335428;G:88267044;T:95464969;N:24389", 75, 75, null, null, 93921820, 88335428, 88267044, 95464969, 24389, "ERX1884319", "ERS1343249", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95995, 0.9634, 0.12849, 0.12623, 0.68083, 0.68071, 0.47043, 0.4775, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1507, "ERR1821826", "ERX1884318", "ERS1343248", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 9", "SAMEA4431799", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TACAGGAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#28.cram", "cram", 364624350.0, 2430829.0, "SC RUN 21115 6#28", "0:75 1:75", "A:95128841;C:86602587;G:86214533;T:96652995;N:25394", 75, 75, null, null, 95128841, 86602587, 86214533, 96652995, 25394, "ERX1884318", "ERS1343248", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95869, 0.96185, 0.12216, 0.11672, 0.69002, 0.68958, 0.48356, 0.47774, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1508, "ERR1821825", "ERX1884317", "ERS1343247", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 13", "SAMEA4431798", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#27", "DN465656V:C4", "Illumina sequencing of library DN465656V:C4  constructed from sample accession ERS1343247 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGTGACT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#27.cram", "cram", 353544300.0, 2356962.0, "SC RUN 21115 6#27", "0:75 1:75", "A:91522331;C:84577361;G:84407911;T:93010734;N:25963", 75, 75, null, null, 91522331, 84577361, 84407911, 93010734, 25963, "ERX1884317", "ERS1343247", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9602, 0.96441, 0.11901, 0.11601, 0.67896, 0.67878, 0.47033, 0.46846, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1509, "ERR1821824", "ERX1884316", "ERS1343246", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 15", "SAMEA4431797", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#26", "DN465656V:B4", "Illumina sequencing of library DN465656V:B4  constructed from sample accession ERS1343246 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TTCCTGCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#26.cram", "cram", 331314450.0, 2208763.0, "SC RUN 21115 6#26", "0:75 1:75", "A:86185793;C:78834854;G:78695495;T:87575910;N:22398", 75, 75, null, null, 86185793, 78834854, 78695495, 87575910, 22398, "ERX1884316", "ERS1343246", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95894, 0.96203, 0.11863, 0.11459, 0.68148, 0.68231, 0.4764, 0.48235, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1510, "ERR1821823", "ERX1884315", "ERS1343245", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 20", "SAMEA4431796", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#25", "DN465656V:A4", "Illumina sequencing of library DN465656V:A4  constructed from sample accession ERS1343245 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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[], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", 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