{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"cDNA\", experiment.library_strategy = \"miRNA-Seq\" and tissue_curation_coarse = \"All anatomical structures\"", "rows": [[41406, "SRR4423130", "SRX2245314", "SRS1745863", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 10 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:prim 16 stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: prim 16 stage31 hpf", "348 10", "348 10", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S10small.fastq", "fastq", 427409571.0, 5026564.0, "S10small.fastq", "0:85.03", "A:98026046;C:116630773;G:114413502;T:98339250;N:0", 85, null, null, null, 98026046, 116630773, 114413502, 98339250, 0, "SRX2245314", "SRS1745863", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.81583, null, 0.17938, null, 0.9094, null, 0.63072, null, 126, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41407, "SRR4423129", "SRX2245313", "SRS1745862", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 9 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:prim 5 stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: prim 5 stage24 hpf", "348 9", "348 9", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S09small.fastq", "fastq", 516614705.0, 6246071.0, "S09small.fastq", "0:82.71", "A:117786535;C:140799134;G:139362428;T:118666608;N:0", 82, null, null, null, 117786535, 140799134, 139362428, 118666608, 0, "SRX2245313", "SRS1745862", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.81132, null, 0.18952, null, 0.88925, null, 0.69719, null, 17, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41408, "SRR4423128", "SRX2245312", "SRS1745850", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 12 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:protruding mouth stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: protruding mouth stage72 hpf", "348 12", "348 12", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S12small.fastq", "fastq", 186817590.0, 3062463.0, "S12small.fastq", "0:61.00", "A:42863072;C:49941244;G:49513828;T:44499446;N:0", 61, null, null, null, 42863072, 49941244, 49513828, 44499446, 0, "SRX2245312", "SRS1745850", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.77668, null, 0.17381, null, 0.8915, null, 0.54189, null, 36, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [41409, "SRR4423127", "SRX2245311", "SRS1745851", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 11 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:long pec stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: long pec stage48 hpf", "348 11", "348 11", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S11small.fastq", "fastq", 405003101.0, 5197273.0, "S11small.fastq", "0:77.93", "A:93494059;C:109265919;G:106696649;T:95546474;N:0", 77, null, null, null, 93494059, 109265919, 106696649, 95546474, 0, "SRX2245311", "SRS1745851", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.78244, null, 0.17047, null, 0.93379, null, 0.6272, null, 30, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Hatching", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41428, "SRR4423108", "SRX2245292", "SRS1745857", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 5 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:90% epiboly stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: 90% epiboly stage 9 hpf", "348 5", "348 5", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S05small.fastq", "fastq", 412237561.0, 3386443.0, "S05small.fastq", "0:121.73", "A:91644321;C:118905395;G:115070912;T:86616933;N:0", 121, null, null, null, 91644321, 118905395, 115070912, 86616933, 0, "SRX2245292", "SRS1745857", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.81233, null, 0.06309, null, 0.93385, null, 0.93973, null, 163, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Gastrula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41429, "SRR4423107", "SRX2245291", "SRS1745856", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 6 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:4 somite stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: 4 somite stage11.3 hpf", "348 6", "348 6", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S06small.fastq", "fastq", 535288776.0, 4443685.0, "S06small.fastq", "0:120.46", "A:119322177;C:152704452;G:149509408;T:113752739;N:0", 120, null, null, null, 119322177, 152704452, 149509408, 113752739, 0, "SRX2245291", "SRS1745856", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.82872, null, 0.09035, null, 0.93194, null, 0.81296, null, 159, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41430, "SRR4423106", "SRX2245290", "SRS1745854", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 3 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:zfs:0000015 stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: zfs:0000015 stage 4.7 hpf", "348 3", "348 3", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S03small.fastq", "fastq", 1025732824.0, 7452991.0, "S03small.fastq", "0:137.63", "A:225573059;C:298586545;G:288470386;T:213102834;N:0", 137, null, null, null, 225573059, 298586545, 288470386, 213102834, 0, "SRX2245290", "SRS1745854", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.8983, null, 0.04271, null, 0.95546, null, 0.91281, null, 159, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41431, "SRR4423105", "SRX2245289", "SRS1745855", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 4 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:70% epiboly stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: 70% epiboly stage7 hpf", "348 4", "348 4", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S04small.fastq", "fastq", 193259658.0, 1840126.0, "S04small.fastq", "0:105.03", "A:43516548;C:54669405;G:53501927;T:41571778;N:0", 105, null, null, null, 43516548, 54669405, 53501927, 41571778, 0, "SRX2245289", "SRS1745855", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.81053, null, 0.16265, null, 0.90698, null, 0.92112, null, 159, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Gastrula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41432, "SRR4423104", "SRX2245288", "SRS1745853", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 1 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:64 cells|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: 64 cells2 hpf", "348 1", "348 1", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S01small.fastq", "fastq", 91910627.0, 1396009.0, "S01small.fastq", "0:65.84", "A:21663404;C:25661192;G:25069267;T:19516764;N:0", 65, null, null, null, 21663404, 25661192, 25069267, 19516764, 0, "SRX2245288", "SRS1745853", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.56828, null, 0.1715, null, 0.92435, null, 0.90047, null, 34, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41433, "SRR4423103", "SRX2245287", "SRS1745852", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 2 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:high stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: high stage3.3 hpf", "348 2", "348 2", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S02small.fastq", "fastq", 304535574.0, 3376105.0, "S02small.fastq", "0:90.20", "A:69193719;C:84372087;G:86707481;T:64262287;N:0", 90, null, null, null, 69193719, 84372087, 86707481, 64262287, 0, "SRX2245287", "SRS1745852", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.56812, null, 0.09695, null, 0.93474, null, 0.93654, null, 51, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41436, "SRR4423100", "SRX2245284", "SRS1745849", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 7 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:12 somite stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: 12 somite stage15 hpf", "348 7", "348 7", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S07small.fastq", "fastq", 279201769.0, 2713759.0, "S07small.fastq", "0:102.88", "A:61655863;C:78667355;G:77702440;T:61176111;N:0", 102, null, null, null, 61655863, 78667355, 77702440, 61176111, 0, "SRX2245284", "SRS1745849", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.79087, null, 0.10046, null, 0.89221, null, 0.77892, null, 158, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41437, "SRR4423099", "SRX2245283", "SRS1745848", "SRP091534", "PRJNA347637", "Danio rerio and Xenopus laevis Raw sequence reads", "PRJNA347637", "Other", "To study the transcriptome during development", null, null, null, null, "Time course 8 Dr", null, "strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:22 somite stage|sex:not determined|tissue:single embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of Zebrafish: 22 somite stage20 hpf", "348 8", "348 8", "Libraries were generated according to the manufacturers\u2019 protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress\u2122 RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 \u00b5l ethanol instead of 120 \u00b5l during purification of cDNA and 134 \u00b5l ethanol instead of 110 \u00b5l in protocol.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP091534", null, null, "S08small.fastq", "fastq", 520785540.0, 4495080.0, "S08small.fastq", "0:115.86", "A:115224831;C:149325753;G:144978190;T:111256766;N:0", 115, null, null, null, 115224831, 149325753, 144978190, 111256766, 0, "SRX2245283", "SRS1745848", "SRA485147", "Universiteit van Amsterdam|SILS", "Universiteit van Amsterdam", 1, 0.83781, null, 0.08976, null, 0.92904, null, 0.80492, null, 183, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-19", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [41457, "SRR4449278", "SRX2267734", "SRS1758938", "SRP092030", "PRJNA350377", "Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly", "PRJNA350377", "Transcriptome Analysis", "Small RNAseq experiment of individual embryos from the 8 different spawns  taken at gastrulation at approximately 50% epiboly", null, null, "Danio rerio embryo at approx. 50% epiboly", "Danio rerio embryo at approx. 50% epiboly", "S09 RID0445", null, "strain:ABTL|dev stage:54% epiboly|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "S09", "S09 RID0445", "S09 RID0445", "Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP092030", null, null, "IonXpressRNA_009_rawlib.basecaller.bam", "bam", 56886794.0, 2186951.0, "IonXpressRNA 009 rawlib.basecaller.bam", "0:26.01", "A:15763527;C:12934017;G:13233004;T:14956246;N:0", 26, null, null, null, 15763527, 12934017, 13233004, 14956246, 0, "SRX2267734", "SRS1758938", "SRA486759", "UNIVERSITY OF AMSTERDAM, SILS|RB&AB", "UNIVERSITY OF AMSTERDAM, SILS", 1, 0.6501, null, 0.44849, null, 0.83465, null, 0.59625, null, 26, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2016-10-25", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [41458, "SRR4449277", "SRX2267733", "SRS1758937", "SRP092030", "PRJNA350377", "Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly", "PRJNA350377", "Transcriptome Analysis", "Small RNAseq experiment of individual embryos from the 8 different spawns  taken at gastrulation at approximately 50% epiboly", null, null, "Danio rerio embryo at approx. 50% epiboly", "Danio rerio embryo at approx. 50% epiboly", "S10 RID0445", null, "strain:ABTL|dev stage:51% epiboly|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "S10", "S10 RID0445", "S10 RID0445", "Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. 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Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. 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Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP092030", null, null, "IonXpressRNA_016_rawlib.basecaller.bam", "bam", 55022551.0, 2073507.0, "IonXpressRNA 016 rawlib.basecaller.bam", "0:26.54", "A:15319738;C:12288588;G:12653066;T:14761159;N:0", 26, null, null, null, 15319738, 12288588, 12653066, 14761159, 0, "SRX2267723", "SRS1758929", "SRA486759", "UNIVERSITY OF AMSTERDAM, SILS|RB&AB", "UNIVERSITY OF AMSTERDAM, SILS", 1, 0.68905, null, 0.46941, null, 0.80306, null, 0.55981, null, 26, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2017-11-01", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [41469, "SRR4449265", "SRX2267722", "SRS1758926", "SRP092030", "PRJNA350377", "Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly", "PRJNA350377", "Transcriptome Analysis", "Small RNAseq experiment of individual embryos from the 8 different spawns  taken at gastrulation at approximately 50% epiboly", null, null, "Danio rerio embryo at approx. 50% epiboly", "Danio rerio embryo at approx. 50% epiboly", "S13 RID0445", null, "strain:ABTL|dev stage:55% epiboly|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "S13", "S13 RID0445", "S13 RID0445", "Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP092030", null, null, "IonXpressRNA_013_rawlib.basecaller.bam", "bam", 49641484.0, 2028008.0, "IonXpressRNA 013 rawlib.basecaller.bam", "0:24.48", "A:13840820;C:11016762;G:11715475;T:13068427;N:0", 24, null, null, null, 13840820, 11016762, 11715475, 13068427, 0, "SRX2267722", "SRS1758926", "SRA486759", "UNIVERSITY OF AMSTERDAM, SILS|RB&AB", "UNIVERSITY OF AMSTERDAM, SILS", 1, 0.55355, null, 0.3659, null, 0.81576, null, 0.55987, null, 22, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2017-11-01", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [41470, "SRR4449264", "SRX2267721", "SRS1758925", "SRP092030", "PRJNA350377", "Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly", "PRJNA350377", "Transcriptome Analysis", "Small RNAseq experiment of individual embryos from the 8 different spawns  taken at gastrulation at approximately 50% epiboly", null, null, "Danio rerio embryo at approx. 50% epiboly", "Danio rerio embryo at approx. 50% epiboly", "S14 RID0445", null, "strain:ABTL|dev stage:56% epiboly|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "S14", "S14 RID0445", "S14 RID0445", "Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP092030", null, null, "IonXpressRNA_014_rawlib.basecaller.bam", "bam", 52969826.0, 2019609.0, "IonXpressRNA 014 rawlib.basecaller.bam", "0:26.23", "A:14762618;C:11847782;G:12164393;T:14195033;N:0", 26, null, null, null, 14762618, 11847782, 12164393, 14195033, 0, "SRX2267721", "SRS1758925", "SRA486759", "UNIVERSITY OF AMSTERDAM, SILS|RB&AB", "UNIVERSITY OF AMSTERDAM, SILS", 1, 0.65926, null, 0.45113, null, 0.80515, null, 0.56221, null, 22, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2017-11-01", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [41471, "SRR4449263", "SRX2267720", "SRS1758923", "SRP092030", "PRJNA350377", "Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly", "PRJNA350377", "Transcriptome Analysis", "Small RNAseq experiment of individual embryos from the 8 different spawns  taken at gastrulation at approximately 50% epiboly", null, null, "Danio rerio embryo at approx. 50% epiboly", "Danio rerio embryo at approx. 50% epiboly", "S11 RID0445", null, "strain:ABTL|dev stage:56% epiboly|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "S11", "S11 RID0445", "S11 RID0445", "Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. 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Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ION_TORRENT", "Ion Torrent Proton", null, "SRP092030", null, null, "IonXpressRNA_011_rawlib.basecaller.bam", "bam", 54877334.0, 2122171.0, "IonXpressRNA 011 rawlib.basecaller.bam", "0:25.86", "A:14884144;C:12539815;G:13173981;T:14279394;N:0", 25, null, null, null, 14884144, 12539815, 13173981, 14279394, 0, "SRX2267720", "SRS1758923", "SRA486759", "UNIVERSITY OF AMSTERDAM, SILS|RB&AB", "UNIVERSITY OF AMSTERDAM, SILS", 1, 0.62581, null, 0.40704, null, 0.82002, null, 0.59605, null, 20, null, "B", null, "usable mapping rate", "ion_torrent", "ion_torrent", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2017-11-01", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [41472, "SRR4449262", "SRX2267719", "SRS1758924", "SRP092030", "PRJNA350377", "Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly", "PRJNA350377", "Transcriptome Analysis", "Small RNAseq experiment of individual embryos from the 8 different spawns  taken at gastrulation at approximately 50% epiboly", null, null, "Danio rerio embryo at approx. 50% epiboly", "Danio rerio embryo at approx. 50% epiboly", "S12 RID0445", null, "strain:ABTL|dev stage:53% epiboly|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "S12", "S12 RID0445", "S12 RID0445", "Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. 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