{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"RT-PCR\", technology = \"unknown\" and tissue_curation = \"Multi-tissue\"", "rows": [[33373, "SRR30168925", "SRX25635545", "SRS22279934", "SRP524879", "PRJNA1145574", "RNA sequencing of tail fin of zebrafish", "PRJNA1145574", "Other", "gene expression change post inhibition of HSP90", null, null, null, "Ax Ti 3d3", "Z Hi 3d3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "tail fin regeneration of zebrafish", "Z Hi 3d3", "Z Hi 3d3", "cDNA barcode", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP524879", null, null, "Z_Hi_3d3_R2.fastq Z_Hi_3d3_R1.fastq", "fastq fastq", 6296371726.0, 20848913.0, "Z Hi 3d3 R1.fastq", "0:151 1:151", "A:1704155951;C:1439352121;G:1462544186;T:1690244568;N:74900", 151, 151, null, null, 1704155951, 1439352121, 1462544186, 1690244568, 74900, "SRX25635545", "SRS22279934", "SRA1942523", "Ocean University of China|Department of marine biology", "Ocean University of China", 2, 0.9328, 0.93327, 0.07548, 0.07488, 0.71985, 0.71928, 0.5049, 0.50889, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-08", "Adult", "Adult", "Multi-tissue", "Multi-system"], [33374, "SRR30168926", "SRX25635544", "SRS22279933", "SRP524879", "PRJNA1145574", "RNA sequencing of tail fin of zebrafish", "PRJNA1145574", "Other", "gene expression change post inhibition of HSP90", null, null, null, "Ax Ti 3d2", "Z Hi 3d2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "tail fin regeneration of zebrafish", "Z Hi 3d2", "Z Hi 3d2", "cDNA barcode", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP524879", null, null, "Z_Hi_3d2_R1.fastq Z_Hi_3d2_R2.fastq", "fastq fastq", 6530683862.0, 21624781.0, "Z Hi 3d2 R1.fastq", "0:151 1:151", "A:1754695891;C:1502355303;G:1526937743;T:1746614271;N:80654", 151, 151, null, null, 1754695891, 1502355303, 1526937743, 1746614271, 80654, "SRX25635544", "SRS22279933", "SRA1942523", "Ocean University of China|Department of marine biology", "Ocean University of China", 2, 0.93139, 0.93214, 0.08116, 0.08178, 0.70981, 0.70983, 0.48395, 0.48661, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-08", "Adult", "Adult", "Multi-tissue", "Multi-system"], [33375, "SRR30168927", "SRX25635543", "SRS22279932", "SRP524879", "PRJNA1145574", "RNA sequencing of tail fin of zebrafish", "PRJNA1145574", "Other", "gene expression change post inhibition of HSP90", null, null, null, "Ax Ti 3d1", "Z Hi 3d1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "tail fin regeneration of zebrafish", "Z Hi 3d1", "Z Hi 3d1", "cDNA barcode", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP524879", null, null, "Z_Hi_3d1_R1.fastq Z_Hi_3d1_R2.fastq", "fastq fastq", 6160626350.0, 20399425.0, "Z Hi 3d1 R1.fastq", "0:151 1:151", "A:1667594818;C:1407434381;G:1429290724;T:1656232741;N:73686", 151, 151, null, null, 1667594818, 1407434381, 1429290724, 1656232741, 73686, "SRX25635543", "SRS22279932", "SRA1942523", "Ocean University of China|Department of marine biology", "Ocean University of China", 2, 0.9337, 0.93249, 0.08009, 0.08009, 0.71242, 0.71338, 0.47654, 0.47528, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-08", "Adult", "Adult", "Multi-tissue", "Multi-system"], [33376, "SRR30168928", "SRX25635542", "SRS22279930", "SRP524879", "PRJNA1145574", "RNA sequencing of tail fin of zebrafish", "PRJNA1145574", "Other", "gene expression change post inhibition of HSP90", null, null, null, "Ax C 3d3", "Z c 3d3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "tail fin regeneration of zebrafish", "Z c 3d3", "Z c 3d3", "cDNA barcode", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP524879", null, null, "Z_C_3d3_R2.fastq Z_C_3d3_R1.fastq", "fastq fastq", 5810255010.0, 19239255.0, "Z C 3d3 R1.fastq", "0:151 1:151", "A:1564226440;C:1336263606;G:1355696622;T:1553998418;N:69924", 151, 151, null, null, 1564226440, 1336263606, 1355696622, 1553998418, 69924, "SRX25635542", "SRS22279930", "SRA1942523", "Ocean University of China|Department of marine biology", "Ocean University of China", 2, 0.92958, 0.92832, 0.07821, 0.07745, 0.70463, 0.70569, 0.47036, 0.47581, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-08", "Adult", "Adult", "Multi-tissue", "Multi-system"], [33377, "SRR30168929", "SRX25635541", "SRS22279931", "SRP524879", "PRJNA1145574", "RNA sequencing of tail fin of zebrafish", "PRJNA1145574", "Other", "gene expression change post inhibition of HSP90", null, null, null, "Ax C 3d2", "Z c 3d2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "tail fin regeneration of zebrafish", "Z c 3d2", "Z c 3d2", "cDNA barcode", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP524879", null, null, "Z_C_3d2_R2.fastq Z_C_3d2_R1.fastq", "fastq fastq", 6856714606.0, 22704353.0, "Z C 3d2 R1.fastq", "0:151 1:151", "A:1850156301;C:1573942247;G:1595025700;T:1837509085;N:81273", 151, 151, null, null, 1850156301, 1573942247, 1595025700, 1837509085, 81273, "SRX25635541", "SRS22279931", "SRA1942523", "Ocean University of China|Department of marine biology", "Ocean University of China", 2, 0.92587, 0.92539, 0.08056, 0.08087, 0.70343, 0.70423, 0.48091, 0.47768, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-08", "Adult", "Adult", "Multi-tissue", "Multi-system"], [33378, "SRR30168930", "SRX25635540", "SRS22279929", "SRP524879", "PRJNA1145574", "RNA sequencing of tail fin of zebrafish", "PRJNA1145574", "Other", "gene expression change post inhibition of HSP90", null, null, null, "Ax C 3d1", "Z c 3d1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "tail fin regeneration of zebrafish", "Z c 3d1", "Z c 3d1", "cDNA barcode", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP524879", null, null, "Z_C_3d1_R1.fastq Z_C_3d1_R2.fastq", "fastq fastq", 5915874074.0, 19588987.0, "Z C 3d1 R1.fastq", "0:151 1:151", "A:1601403264;C:1350219159;G:1374928971;T:1589252208;N:70472", 151, 151, null, null, 1601403264, 1350219159, 1374928971, 1589252208, 70472, "SRX25635540", "SRS22279929", "SRA1942523", "Ocean University of China|Department of marine biology", "Ocean University of China", 2, 0.92552, 0.92878, 0.07906, 0.07985, 0.70264, 0.70323, 0.48016, 0.48019, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-08", "Adult", "Adult", "Multi-tissue", "Multi-system"]], "truncated": false, "filtered_table_rows_count": 6, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"technology\" = :p1 and \"tissue_curation\" = :p2 order by rowid limit 101", "params": {"p0": "RT-PCR", "p1": "unknown", "p2": "Multi-tissue"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "RT-PCR", "label": "RT-PCR", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?technology=unknown&tissue_curation=Multi-tissue", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "PAIRED", "label": "PAIRED", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&experiment.library_layout=PAIRED", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&experiment.platform=ILLUMINA", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "Adult", "label": "Adult", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&devstage_curation_coarse=Adult", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "Adult", "label": "Adult", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&devstage_curation=Adult", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "Multi-system", "label": "Multi-system", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue&tissue_curation_coarse=Multi-system", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "Multi-tissue", "label": "Multi-tissue", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown", "selected": true}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=RT-PCR&technology=unknown&tissue_curation=Multi-tissue", "results": [{"value": "unknown", "label": "unknown", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RT-PCR&tissue_curation=Multi-tissue", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 96.28602100019634}