{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"RANDOM PCR\", technology = \"unknown\" and tissue_curation_coarse = \"All anatomical structures\"", "rows": [[39629, "SRR1947863", "SRX981062", "SRS889614", "SRP056748", "PRJNA279991", "Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality", "PRJNA279991", "Other", "Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer\u2019s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. 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Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer\u2019s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. 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Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.", null, null, null, "Danio rerio injected with negative control morpholino 5.5hpf", "Zebrafish injected with untargeted negative control morpholino", null, "strain:Ekkwill|dev stage:5.5 hpf|sex:pooled male and female|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality", "Zebrafish injected with untargeted negative control morpholino", "Zebrafish injected with untargeted negative control morpholino replicate 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP056748", null, "loader:latf load", "Std-190413_ACACGA_L008_R2.fastq.gz Std-190413_ACACGA_L008_R1.fastq.gz", "fastq fastq", 10412449358.0, 51546779.0, "RNAseq Danio rerio 5.5hpf negative control morpholino replicate1", "0:101 1:101", "A:2998996009;C:2064995108;G:2125498634;T:3066600855;N:156358752", 101, 101, null, null, 2998996009, 2064995108, 2125498634, 3066600855, 156358752, "SRX981011", "SRS895863", "SRA249481", "Gladstone Institute|Bioinformatics", "Gladstone Institutes", 2, 0.87394, 0.84802, 0.15672, 0.23447, 0.77072, 0.89049, 0.63241, 0.65533, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "United States", "2016-03-31", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [39632, "SRR1947862", "SRX974390", "SRS889614", "SRP056748", "PRJNA279991", "Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality", "PRJNA279991", "Other", "Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer\u2019s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.", null, null, null, "Danio rerio injected with mespaa morpholino 5.5hpf", "Zebrafish injected with mespaa morpholino", null, "strain:Ekkwill|dev stage:5.5hpf|sex:pooled male and female|tissue:whole embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality", "RNAseq analysis of mespaa knockdown embryos", "Zebrafish injected with mespaa morpholino replicate 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "SRP056748", null, "loader:latf load", "Mespa-190413_CACACA_L008_R2.fastq.gz Mespa-190413_CACACA_L008_R1.fastq.gz", "fastq fastq", 715965164.0, 3668538.0, "RNAseq Danio rerio 5.5hpf mespaa morpholino replicate1", "0:101 1:101", "A:203464307;C:144071219;G:148845038;T:209200873;N:10383727", 101, 101, null, null, 203464307, 144071219, 148845038, 209200873, 10383727, "SRX974390", "SRS889614", "SRA249481", "Gladstone Institute|Bioinformatics", "Gladstone Institutes", 2, 0.86222, 0.8307, 0.14165, 0.17545, 0.7624, 0.84415, 0.65454, 0.64758, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "United States", "2015-04-07", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [41309, "SRR4242454", "SRX2163334", "SRS1691357", "SRP089876", "PRJNA341782", "Danio rerio Phenotype or Genotype", "PRJNA341782", "Other", "Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.", null, null, null, null, "ho 160", null, "strain:TU|isolate:homozygous|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. 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Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.", null, null, null, null, "ZIS 1", null, "strain:mutant biological replicate 1|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish mutant at 10 dpf", "ZIS 1", "ZIS 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "ZIS-1_S58_L004_R1_001.fastq ZIS-1_S58_L004_R2_001.fastq", "fastq fastq", 9474125956.0, 31371278.0, "ZIS 1 S58 L004 R1 001.fastq", "0:151 1:151", "A:2432127105;C:2294541938;G:2369906198;T:2374445988;N:3104727", 151, 151, null, null, 2432127105, 2294541938, 2369906198, 2374445988, 3104727, "SRX2205506", "SRS1723859", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94217, 0.94136, 0.05812, 0.05769, 0.67957, 0.68665, 0.48986, 0.48912, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41352, "SRR4330937", "SRX2205505", "SRS1723863", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.", null, null, null, null, "WT 3", null, "strain:wild type biological replicate 3|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 10 dpf", "WT 3", "WT 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "WT-3_S59_L004_R1_001.fastq WT-3_S59_L004_R2_001.fastq", "fastq fastq", 9459728710.0, 31323605.0, "WT 3 S59 L004 R2 001.fastq", "0:151 1:151", "A:2435834973;C:2283457751;G:2353515662;T:2383834638;N:3085686", 151, 151, null, null, 2435834973, 2283457751, 2353515662, 2383834638, 3085686, "SRX2205505", "SRS1723863", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93703, 0.93671, 0.06932, 0.06902, 0.67815, 0.68527, 0.49406, 0.48629, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41353, "SRR4330936", "SRX2205504", "SRS1723860", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.", null, null, null, null, "WT 2", null, "strain:wild type biological replicate 2|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 10 dpf", "WT 2", "WT 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "WT-2_S39_L003_R1_001.fastq WT-2_S39_L003_R2_001.fastq", "fastq fastq", 8115257628.0, 26871714.0, "WT 2 S39 L003 R1 001.fastq", "0:151 1:151", "A:2056302105;C:1991691115;G:2061808328;T:2003236611;N:2219469", 151, 151, null, null, 2056302105, 1991691115, 2061808328, 2003236611, 2219469, "SRX2205504", "SRS1723860", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.9479, 0.94848, 0.03505, 0.0349, 0.69946, 0.70638, 0.4871, 0.48737, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41354, "SRR4330935", "SRX2205503", "SRS1723858", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.", null, null, null, null, "WT 1", null, "strain:wild type biological replicate 1|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 10 dpf", "WT 1", "WT 1", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "WT-1_S38_L003_R1_001.fastq WT-1_S38_L003_R2_001.fastq", "fastq fastq", 9771991274.0, 32357587.0, "WT 1 S38 L003 R2 001.fastq", "0:151 1:151", "A:2524417259;C:2348903783;G:2421563752;T:2474419170;N:2687310", 151, 151, null, null, 2524417259, 2348903783, 2421563752, 2474419170, 2687310, "SRX2205503", "SRS1723858", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93787, 0.93896, 0.0697, 0.06907, 0.67446, 0.68162, 0.49385, 0.49554, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41603, "SRR5086607", "SRX2403900", "SRS1843204", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "RIP2 Etarda 2", null, "isolate:RIP2 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RIP2 Etarda 2", "RIP2 Etarda 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R2.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R1.fastq.gz", "fastq fastq", 12903564000.0, 43011880.0, "S231 07B CHG009012 0413lane6 RP E tarda 2 L003 R1.fastq.gz", "0:150 1:150", "A:3540121379;C:2905716861;G:3027503729;T:3429809429;N:412602", 150, 150, null, null, 3540121379, 2905716861, 3027503729, 3429809429, 412602, "SRX2403900", "SRS1843204", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91895, 0.92448, 0.22816, 0.22865, 0.6873, 0.69104, 0.59821, 0.59683, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-12-08", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41604, "SRR5086606", "SRX2403899", "SRS1843203", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "NOD1 Etarda 1", null, "isolate:NOD1 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish NOD1 mutant at 7 dpf", "NOD1 Etarda 1", "NOD1 Etarda 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R2.fastq.gz", "fastq fastq", 12320572500.0, 41068575.0, "S231 07B CHG009012 0413lane6 ND E tarda 1 L003 R1.fastq.gz", "0:150 1:150", "A:3355646078;C:2797387103;G:2920550779;T:3246590603;N:397937", 150, 150, null, null, 3355646078, 2797387103, 2920550779, 3246590603, 397937, "SRX2403899", "SRS1843203", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.86604, 0.87043, 0.20071, 0.20146, 0.69369, 0.69869, 0.5907, 0.59843, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41605, "SRR5086605", "SRX2403898", "SRS1843202", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "NOD1 Etarda 2", null, "isolate:NOD1 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish NOD1 mutant at 7 dpf", "NOD1 Etarda 2", "NOD1 Etarda 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R2.fastq.gz", "fastq fastq", 15551299800.0, 51837666.0, "S231 07B CHG009012 0413lane6 ND E tarda 2 L003 R1.fastq.gz", "0:150 1:150", "A:4265070757;C:3495006741;G:3648563581;T:4142124454;N:534267", 150, 150, null, null, 4265070757, 3495006741, 3648563581, 4142124454, 534267, "SRX2403898", "SRS1843202", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.86759, 0.86834, 0.23528, 0.23586, 0.68779, 0.69272, 0.57804, 0.57769, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41606, "SRR5086604", "SRX2403897", "SRS1843201", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "RIP2 Etarda 3", null, "isolate:RIP2 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RIP2 Etarda 3", "RIP2 Etarda 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R2.fastq.gz", "fastq fastq", 12144058200.0, 40480194.0, "S231 07B CHG009012 0413lane6 RP E tarda 3 L003 R1.fastq.gz", "0:150 1:150", "A:3277198817;C:2779538400;G:2897367228;T:3189540397;N:413358", 150, 150, null, null, 3277198817, 2779538400, 2897367228, 3189540397, 413358, "SRX2403897", "SRS1843201", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91654, 0.9175, 0.25593, 0.25637, 0.68795, 0.69414, 0.56468, 0.56806, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41607, "SRR5086603", "SRX2403896", "SRS1843200", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "WT Etarda 3", null, "isolate:wild type biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "WT Etarda 3", "WT Etarda 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R2.fastq.gz", "fastq fastq", 13158784200.0, 43862614.0, "S231 07B CHG009012 0413lane6 WT E tarda 3 L003 R1.fastq.gz", "0:150 1:150", "A:3492740553;C:3076792456;G:3216533074;T:3372287751;N:430366", 150, 150, null, null, 3492740553, 3076792456, 3216533074, 3372287751, 430366, "SRX2403896", "SRS1843200", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91602, 0.92416, 0.23246, 0.23514, 0.68164, 0.68663, 0.55407, 0.55215, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41608, "SRR5086602", "SRX2403895", "SRS1843199", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "WT Etarda 1", null, "isolate:wild type biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7dpf", "WT Etarda 1", "WT Etarda 1", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R2.fastq.gz", "fastq fastq", 11991766500.0, 39972555.0, "S231 07B CHG009012 0413lane6 WT E tarda 1 L003 R1.fastq.gz", "0:150 1:150", "A:3282107515;C:2699757677;G:2810716102;T:3198780035;N:405171", 150, 150, null, null, 3282107515, 2699757677, 2810716102, 3198780035, 405171, "SRX2403895", "SRS1843199", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91731, 0.91778, 0.23094, 0.23042, 0.6784, 0.68596, 0.59413, 0.59241, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41609, "SRR5086601", "SRX2403894", "SRS1843198", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "NOD1 Etarda 3", null, "isolate:NOD1 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish NOD1 mutant at 7 dpf", "NOD1 Etarda 3", "NOD1 Etarda 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R2.fastq.gz", "fastq fastq", 13231011300.0, 44103371.0, "S231 07B CHG009012 0413lane6 ND E tarda 3 L003 R1.fastq.gz", "0:150 1:150", "A:3583948856;C:3022120866;G:3144073054;T:3480438095;N:430429", 150, 150, null, null, 3583948856, 3022120866, 3144073054, 3480438095, 430429, "SRX2403894", "SRS1843198", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.8625, 0.86327, 0.21095, 0.21123, 0.69126, 0.69808, 0.59807, 0.59873, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41610, "SRR5086600", "SRX2403893", "SRS1843197", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "WT Etarda 2", null, "isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "WT Etarda 2", "WT Etarda 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R2.fastq.gz", "fastq fastq", 11385997200.0, 37953324.0, "S231 07B CHG009012 0413lane6 WT E tarda 2 L003 R1.fastq.gz", "0:150 1:150", "A:3100666193;C:2581361422;G:2676308702;T:3027299840;N:361043", 150, 150, null, null, 3100666193, 2581361422, 2676308702, 3027299840, 361043, "SRX2403893", "SRS1843197", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91592, 0.91843, 0.23215, 0.23276, 0.67894, 0.6843, 0.56756, 0.57405, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41611, "SRR5086599", "SRX2403892", "SRS1843196", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.", null, null, null, null, "RIP2 Etarda 1", null, "isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RIP2 Etarda 1", "RIP2 Etarda 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R2.fastq.gz", "fastq fastq", 12517987200.0, 41726624.0, "S231 07B CHG009012 0413lane6 RP E tarda 1 L003 R1.fastq.gz", "0:150 1:150", "A:3383702176;C:2864897363;G:2969958296;T:3299042555;N:386810", 150, 150, null, null, 3383702176, 2864897363, 2969958296, 3299042555, 386810, "SRX2403892", "SRS1843196", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.92847, 0.93046, 0.20764, 0.20908, 0.68217, 0.68889, 0.58846, 0.59063, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41754, "SRR5131065", "SRX2444929", "SRS1878801", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.", null, null, null, null, "control 3", null, "isolate:wild type biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "control 3", "control 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-WT-3_L001_R2.fastq.gz S231_07B_CHG009010-0413lane4-WT-3_L001_R1.fastq.gz", "fastq fastq", 7170870300.0, 23902901.0, "S231 07B CHG009010 0413lane4 WT 3 L001 R2.fastq.gz", "0:150 1:150", "A:1861223343;C:1713993670;G:1720465419;T:1875067010;N:120858", 150, 150, null, null, 1861223343, 1713993670, 1720465419, 1875067010, 120858, "SRX2444929", "SRS1878801", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93719, 0.93331, 0.07804, 0.07734, 0.66478, 0.67152, 0.48991, 0.48846, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-12-25", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41755, "SRR5131064", "SRX2444928", "SRS1878800", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.", null, null, null, null, "RP 3", null, "isolate:RIP2 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RP 3", "RP 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-RP-3_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-3_L001_R2.fastq.gz", "fastq fastq", 7468205400.0, 24894018.0, "S231 07B CHG009010 0413lane4 RP 3 L001 R1.fastq.gz", "0:150 1:150", "A:1923116988;C:1800729614;G:1804880487;T:1939349442;N:128869", 150, 150, null, null, 1923116988, 1800729614, 1804880487, 1939349442, 128869, "SRX2444928", "SRS1878800", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94182, 0.93791, 0.07003, 0.06911, 0.67391, 0.68032, 0.48725, 0.48383, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41756, "SRR5131063", "SRX2444927", "SRS1878799", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.", null, null, null, null, "control 1", null, "isolate:wild type biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7dpf", "control 1", "control 1", "To investigate the possible mechanism that RIP2 impacts immune response in zebrafish we performed transcriptome analysis. Zebrafish larvae from WT and RIP / were collected at 7 dpf.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-WT-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-1_L001_R2.fastq.gz", "fastq fastq", 7794774600.0, 25982582.0, "S231 07B CHG009010 0413lane4 WT 1 L001 R1.fastq.gz", "0:150 1:150", "A:2030478380;C:1854310335;G:1862519444;T:2047324790;N:141651", 150, 150, null, null, 2030478380, 1854310335, 1862519444, 2047324790, 141651, "SRX2444927", "SRS1878799", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94149, 0.93653, 0.07296, 0.07218, 0.66614, 0.67294, 0.49615, 0.48813, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41757, "SRR5131062", "SRX2444926", "SRS1878798", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.", null, null, null, null, "control 2", null, "isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "control 2", "control 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-WT-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-2_L001_R2.fastq.gz", "fastq fastq", 5623326600.0, 18744422.0, "S231 07B CHG009010 0413lane4 WT 2 L001 R2.fastq.gz", "0:150 1:150", "A:1451164902;C:1350358314;G:1359170147;T:1462531546;N:101691", 150, 150, null, null, 1451164902, 1350358314, 1359170147, 1462531546, 101691, "SRX2444926", "SRS1878798", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93864, 0.93904, 0.06797, 0.06755, 0.67048, 0.67521, 0.49371, 0.48819, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41758, "SRR5131061", "SRX2444925", "SRS1878797", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.", null, null, null, null, "RP 1", null, "isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RP 1", "RP 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-RP-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-1_L001_R2.fastq.gz", "fastq fastq", 8583762600.0, 28612542.0, "S231 07B CHG009010 0413lane4 RP 1 L001 R2.fastq.gz", "0:150 1:150", "A:2233488442;C:2047436003;G:2053585249;T:2249097620;N:155286", 150, 150, null, null, 2233488442, 2047436003, 2053585249, 2249097620, 155286, "SRX2444925", "SRS1878797", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94045, 0.93559, 0.08356, 0.0825, 0.66576, 0.67188, 0.48456, 0.48745, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41759, "SRR5131060", "SRX2444924", "SRS1878796", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.", null, null, null, null, "RP 2", null, "isolate:RIP2 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RP 2", "RP 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-RP-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-2_L001_R2.fastq.gz", "fastq fastq", 6660884700.0, 22202949.0, "S231 07B CHG009010 0413lane4 RP 2 L001 R1.fastq.gz", "0:150 1:150", "A:1716524391;C:1604826566;G:1610050455;T:1729364340;N:118948", 150, 150, null, null, 1716524391, 1604826566, 1610050455, 1729364340, 118948, "SRX2444924", "SRS1878796", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94509, 0.94069, 0.07191, 0.0702, 0.67322, 0.68045, 0.4937, 0.4864, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [55655, "SRR10674410", "SRX7351703", "SRS5811186", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 100 1", null, "isolate:biologocal replicate 10|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050110", "bps050110", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_100_1_1.fq.gz BPS_100_1_2.fq.gz", "fastq fastq", 6958801200.0, 69588012.0, "BPS 100 1 1.fq.gz", "0:100 1:100", "A:1852139865;C:1635606671;G:1596180575;T:1874072794;N:801295", 100, 100, null, null, 1852139865, 1635606671, 1596180575, 1874072794, 801295, "SRX7351703", "SRS5811186", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94716, null, 0.09824, null, 0.68475, null, 0.47195, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55656, "SRR10674411", "SRX7351702", "SRS5811185", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 10 3", null, "isolate:biologocal replicate 9|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050109", "bps050109", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_10_3_1.fq.gz BPS_10_3_2.fq.gz", "fastq fastq", 6969574800.0, 69695748.0, "BPS 10 3 1.fq.gz", "0:100 1:100", "A:1860393053;C:1631995190;G:1597357772;T:1879188120;N:640665", 100, 100, null, null, 1860393053, 1631995190, 1597357772, 1879188120, 640665, "SRX7351702", "SRS5811185", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94597, null, 0.10542, null, 0.68016, null, 0.4666, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55657, "SRR10674412", "SRX7351701", "SRS5811182", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 10 2", null, "isolate:biologocal replicate 8|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050108", "bps050108", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_10_2_1.fq.gz BPS_10_2_2.fq.gz", "fastq fastq", 6709340400.0, 67093404.0, "BPS 10 2 1.fq.gz", "0:100 1:100", "A:2036224090;C:1319652145;G:1297564214;T:2055258677;N:641274", 100, 100, null, null, 2036224090, 1319652145, 1297564214, 2055258677, 641274, "SRX7351701", "SRS5811182", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.87778, null, 0.38111, null, 0.71543, null, 0.56061, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55658, "SRR10674413", "SRX7351700", "SRS5811181", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 10 1", null, "isolate:biologocal replicate 7|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050107", "bps050107", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . 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To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1 3", null, "isolate:biologocal replicate 6|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050106", "bps050106", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . 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To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1 2", null, "isolate:biologocal replicate 5|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050105", "bps050105", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . 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To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "Cntrol3", null, "isolate:biologocal replicate 18|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050118", "bps050118", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . 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To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "Cntrol1", null, "isolate:biologocal replicate 16|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050116", "bps050116", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . 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