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null, null, null, null, null, null, null, "rapamycin cold", "RC", "RC", "liver RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP127527", null, null, "RL1_R1_001.fastq.gz RL1_R2_001.fastq.gz", "fastq fastq", 8556927600.0, 28523092.0, "RL1 R2 001.fastq.gz", "0:150 1:150", "A:2218480468;C:2034236949;G:2074373957;T:2229124142;N:712084", 150, 150, null, null, 2218480468, 2034236949, 2074373957, 2229124142, 712084, "SRX3510996", "SRS2788361", "SRA641706", "East China Normal University|LANEH", "East China Normal University", 2, 0.95271, 0.90274, 0.01902, 0.01692, 0.85721, 0.87308, 0.29004, 0.27111, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-01-01", "Adult", "Adult", "Liver", "Liver and Biliary System"], [45030, "SRR6417975", "SRX3510995", "SRS2788360", "SRP127527", "PRJNA427439", "zebrafish  Raw sequence reads", "PRJNA427439", "Whole Genome Sequencing", "difference of zebrafish liver transcription under cold stress of three treatments", null, null, null, null, "FC", null, "isolate:liver sample|breed:zebrafish|cultivar:not applicable|ecotype:missing|age:4 month|dev stage:not collected|sex:female|tissue:liver|collection date:2016 10|treatment:fasting fish at low temperature|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "fasting cold", "FC", "FC", "liver RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP127527", null, null, "SL1_R2_001.fastq.gz SL1_R1_001.fastq.gz", "fastq fastq", 8425906500.0, 28086355.0, "SL1 R1 001.fastq.gz", "0:150 1:150", "A:2198800566;C:1989895790;G:2017764820;T:2218716492;N:728832", 150, 150, null, null, 2198800566, 1989895790, 2017764820, 2218716492, 728832, "SRX3510995", "SRS2788360", "SRA641706", "East China Normal University|LANEH", "East China Normal University", 2, 0.94066, 0.88199, 0.02227, 0.01939, 0.87825, 0.89138, 0.20322, 0.19415, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2017-12-25", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58565, "SRR11411804", "SRX7990456", "SRS6374486", "SRP253956", "PRJNA615045", "Strategy of Hepatic Metabolic Defects Induced by beclin1 Heterozygosity in Adult Zebrafish", "PRJNA615045", "Other", "In our study  mutant zebrafish lines of autophagy related genes beclin1 were generated by CRISPR/Cas9 gene editing technology.Interestingly  male beclin1 heterozygous zebrafish displayed liver defects in the morphology and histology  including abnormal hepatocyte proliferation  hemorrhagic and inflammatory phenotypes. In order to better study the phenotype of beclin1 heterozygous zebrafish  we extracted RNA from the liver of 12 mpf male beclin1 heterozygous and WT for transcriptomics research.", null, null, null, null, "zebrafish", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:12months|dev stage:sex mature|sex:male|tissue:liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult male  liver", "beclin1 heterozygous", "beclin1 heterozygous", "Sequencing libraries were generated using the NEBNext Ultra RNA Library Prep Kit for Illumina #E7530L  NEB  USA following the manufacturers recommendations", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP253956", null, null, "Beclin1_R1.fq.gz Beclin1_R2.fq.gz", "fastq fastq", 7286695500.0, 24288985.0, "Beclin1 R1.fq.gz", "0:150 1:150", "A:1901077388;C:1739767288;G:1753568948;T:1892271367;N:10509", 150, 150, null, null, 1901077388, 1739767288, 1753568948, 1892271367, 10509, "SRX7990456", "SRS6374486", "SRA1059106", "Huazhong Agricultural University|College of Fisheries", "Huazhong Agricultural University", 2, 0.9568, 0.95511, 0.03708, 0.03692, 0.78348, 0.78352, 0.47534, 0.47335, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "nebnext", "bulk", "unknown", "unknown", null, "China", "2020-03-25", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58566, "SRR11411805", "SRX7990455", "SRS6374486", "SRP253956", "PRJNA615045", "Strategy of Hepatic Metabolic Defects Induced by beclin1 Heterozygosity in Adult Zebrafish", "PRJNA615045", "Other", "In our study  mutant zebrafish lines of autophagy related genes beclin1 were generated by CRISPR/Cas9 gene editing technology.Interestingly  male beclin1 heterozygous zebrafish displayed liver defects in the morphology and histology  including abnormal hepatocyte proliferation  hemorrhagic and inflammatory phenotypes. In order to better study the phenotype of beclin1 heterozygous zebrafish  we extracted RNA from the liver of 12 mpf male beclin1 heterozygous and WT for transcriptomics research.", null, null, null, null, "zebrafish", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:12months|dev stage:sex mature|sex:male|tissue:liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult male  liver", "wildtype", "wildtype", "Sequencing libraries were generated using the NEBNext Ultra RNA Library Prep Kit for Illumina #E7530L  NEB  USA following the manufacturers recommendations", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP253956", null, null, "WT_R1.fq.gz WT_R2.fq.gz", "fastq fastq", 6960039000.0, 23200130.0, "WT R1.fq.gz", "0:150 1:150", "A:1847783132;C:1632610148;G:1649392179;T:1830243147;N:10394", 150, 150, null, null, 1847783132, 1632610148, 1649392179, 1830243147, 10394, "SRX7990455", "SRS6374486", "SRA1059106", "Huazhong Agricultural University|College of Fisheries", "Huazhong Agricultural University", 2, 0.97949, 0.97756, 0.02168, 0.02147, 0.85038, 0.85027, 0.1844, 0.18611, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "nebnext", "bulk", "unknown", "unknown", null, "China", "2020-03-25", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58979, "SRR11610423", "SRX8176699", "SRS6536454", "SRP258542", "PRJNA626778", "Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure", "PRJNA626778", "Metagenomics", "RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h  and on zebrafish liver post 21 d exposure  in triplicate  using Illumina HiSeq X Ten", null, null, null, null, "T10", null, "cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:D liver1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "LV 1", "D liver1", "D liver1", "D liver1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP258542", null, null, "T10_2.fq.gz T10_1.fq.gz", "fastq fastq", 9319416300.0, 31064721.0, "T10 1.fq.gz", "0:150 1:150", "A:2382109376;C:2250806492;G:2276209586;T:2410187717;N:103129", 150, 150, null, null, 2382109376, 2250806492, 2276209586, 2410187717, 103129, "SRX8176699", "SRS6536454", "SRA1069066", "Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts", "Zhejiang Academy of Agricultural Sciences", 2, 0.9335, 0.93557, 0.0189, 0.01748, 0.75124, 0.75383, 0.44403, 0.44618, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-04-26", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58980, "SRR11610424", "SRX8176698", "SRS6536453", "SRP258542", "PRJNA626778", "Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure", "PRJNA626778", "Metagenomics", "RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h  and on zebrafish liver post 21 d exposure  in triplicate  using Illumina HiSeq X Ten", null, null, null, null, "T09", null, "cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:ck liver3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "HS 3", "ck liver3", "ck liver3", "ck liver3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP258542", null, null, "T09_1.fq.gz T09_2.fq.gz", "fastq fastq", 7249750800.0, 24165836.0, "T09 1.fq.gz", "0:150 1:150", "A:1872794684;C:1728618707;G:1758442166;T:1889814457;N:80786", 150, 150, null, null, 1872794684, 1728618707, 1758442166, 1889814457, 80786, "SRX8176698", "SRS6536453", "SRA1069066", "Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts", "Zhejiang Academy of Agricultural Sciences", 2, 0.94025, 0.94514, 0.02748, 0.02696, 0.73681, 0.74014, 0.41226, 0.40726, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-04-26", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58981, "SRR11610425", "SRX8176697", "SRS6536452", "SRP258542", "PRJNA626778", "Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure", "PRJNA626778", "Metagenomics", "RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h  and on zebrafish liver post 21 d exposure  in triplicate  using Illumina HiSeq X Ten", null, null, null, null, "T08", null, "cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:ck liver2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "HS 2", "ck liver2", "ck liver2", "ck liver2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP258542", null, null, "T08_2.fq.gz T08_1.fq.gz", "fastq fastq", 7619471100.0, 25398237.0, "T08 1.fq.gz", "0:150 1:150", "A:1975421444;C:1810415163;G:1841274324;T:1992275976;N:84193", 150, 150, null, null, 1975421444, 1810415163, 1841274324, 1992275976, 84193, "SRX8176697", "SRS6536452", "SRA1069066", "Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts", "Zhejiang Academy of Agricultural Sciences", 2, 0.93693, 0.95463, 0.03222, 0.03219, 0.74503, 0.74718, 0.39856, 0.40885, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-04-26", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58982, "SRR11610426", "SRX8176696", "SRS6536451", "SRP258542", "PRJNA626778", "Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure", "PRJNA626778", "Metagenomics", "RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h  and on zebrafish liver post 21 d exposure  in triplicate  using Illumina HiSeq X Ten", null, null, null, null, "T07", null, "cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:ck liver1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "HS 1", "ck liver1", "ck liver1", "ck liver1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP258542", null, null, "T07_2.fq.gz T07_1.fq.gz", "fastq fastq", 7598635800.0, 25328786.0, "T07 1.fq.gz", "0:150 1:150", "A:1958340001;C:1818073157;G:1845003964;T:1977146259;N:72419", 150, 150, null, null, 1958340001, 1818073157, 1845003964, 1977146259, 72419, "SRX8176696", "SRS6536451", "SRA1069066", "Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts", "Zhejiang Academy of Agricultural Sciences", 2, 0.93509, 0.94247, 0.02736, 0.02598, 0.74974, 0.75276, 0.40332, 0.40688, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-04-26", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58987, "SRR11610431", "SRX8176691", "SRS6536446", "SRP258542", "PRJNA626778", "Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure", "PRJNA626778", "Metagenomics", "RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h  and on zebrafish liver post 21 d exposure  in triplicate  using Illumina HiSeq X Ten", null, null, null, null, "T12", null, "cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:D liver3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "LV 3", "D liver3", "D liver3", "D liver3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP258542", null, null, "T12_1.fq.gz T12_2.fq.gz", "fastq fastq", 7612110000.0, 25373700.0, "T12 1.fq.gz", "0:150 1:150", "A:1958111367;C:1822786033;G:1852051043;T:1979077989;N:83568", 150, 150, null, null, 1958111367, 1822786033, 1852051043, 1979077989, 83568, "SRX8176691", "SRS6536446", "SRA1069066", "Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts", "Zhejiang Academy of Agricultural Sciences", 2, 0.93639, 0.94002, 0.02691, 0.02656, 0.73886, 0.74266, 0.44625, 0.44344, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-04-26", "Adult", "Adult", "Liver", "Liver and Biliary System"], [58988, "SRR11610432", "SRX8176690", "SRS6536443", "SRP258542", "PRJNA626778", "Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure", "PRJNA626778", "Metagenomics", "RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h  and on zebrafish liver post 21 d exposure  in triplicate  using Illumina HiSeq X Ten", null, null, null, null, "T11", null, "cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:D liver2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "LV 2", "D liver2", "D liver2", "D liver2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP258542", null, null, "T11_1.fq.gz T11_2.fq.gz", "fastq fastq", 7896792900.0, 26322643.0, "T11 1.fq.gz", "0:150 1:150", "A:2044986556;C:1878620990;G:1910303350;T:2062794067;N:87937", 150, 150, null, null, 2044986556, 1878620990, 1910303350, 2062794067, 87937, "SRX8176690", "SRS6536443", "SRA1069066", "Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts", "Zhejiang Academy of Agricultural Sciences", 2, 0.93689, 0.94251, 0.03237, 0.03017, 0.74255, 0.74641, 0.40098, 0.39777, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-04-26", "Adult", "Adult", "Liver", "Liver and Biliary System"], [68202, "SRR17658919", "SRX13826963", "SRS11706208", "SRP355728", "PRJNA798522", "Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish", "PRJNA798522", "Other", "Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity", null, null, null, "CLF duplication 3", "Ctrl3 liver female 3", null, "strain:AB|dev stage:adult12|sex:female|tissue:liver12|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CLF duplication 3", "Ctrl3 liver female 3", "Ctrl3 liver female 3", "Ctrl3 liver female 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP355728", null, null, "CLF3_1.fq.gz CLF3_2.fq.gz", "fastq fastq", 6712722900.0, 22375743.0, "CLF3 1.fq.gz", "0:150 1:150", "A:1783792403;C:1575082041;G:1585315564;T:1767759802;N:773090", 150, 150, null, null, 1783792403, 1575082041, 1585315564, 1767759802, 773090, "SRX13826963", "SRS11706208", "SRA1358625", "Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center", "Chinese Academy of Fishery Sciences", 2, 0.9662, 0.96595, 0.01762, 0.01789, 0.8887, 0.88828, 0.15778, 0.15829, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2022-01-19", "Adult", "Adult", "Liver", "Liver and Biliary System"], [68203, "SRR17658920", "SRX13826962", "SRS11706207", "SRP355728", "PRJNA798522", "Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish", "PRJNA798522", "Other", "Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity", null, null, null, "Z1LF duplication 1", "Zincone1 liver female 1", null, "strain:AB|dev stage:adult13|sex:female|tissue:liver13|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Z1LF duplication 1", "Zincone1 liver female 1", "Zincone1 liver female 1", "Zincone1 liver female 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP355728", null, null, "Z1LF1_2.fq.gz Z1LF1_1.fq.gz", "fastq fastq", 6782491200.0, 22608304.0, "Z1LF1 1.fq.gz", "0:150 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"strain:AB|dev stage:adult14|sex:female|tissue:liver14|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Z1LF duplication 2", "Zincone2 liver female 2", "Zincone2 liver female 2", "Zincone2 liver female 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP355728", null, null, "Z1LF2_1.fq.gz Z1LF2_2.fq.gz", "fastq fastq", 6742673100.0, 22475577.0, "Z1LF2 1.fq.gz", "0:150 1:150", "A:1792296919;C:1582977645;G:1582194285;T:1784406986;N:797265", 150, 150, null, null, 1792296919, 1582977645, 1582194285, 1784406986, 797265, "SRX13826961", "SRS11706206", "SRA1358625", "Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center", "Chinese Academy of Fishery Sciences", 2, 0.96512, 0.96401, 0.02268, 0.02287, 0.8784, 0.87868, 0.1342, 0.13433, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", 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