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rerio strain:Wild Transcriptome or Gene expression", "PRJNA248169", "Other", "Differential transcriptome map of Zebrafish Caudal fin", null, null, "Two days time post treatment", null, "2DZF", null, "breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:2 days time point|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Danio rerio Transcriptome or Gene expression", "Danio rerioPRJNA248169 4", "1", "TruSeq adapter were used.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP042111", null, null, "2DZF-Danio_rerio_1R.fastq.bz2 2DZF-Danio_rerio_2R.fastq.bz2", "fastq fastq", 6925437084.0, 34284342.0, "2DZF", "0:101 1:101", "A:1948705184;C:1527739911;G:1509464867;T:1939201870;N:325252", 101, 101, null, null, 1948705184, 1527739911, 1509464867, 1939201870, 325252, "SRX553171", "SRS620470", "SRA166158", "CCMB|CCMB", "CCMB", 2, 0.92094, 0.9222, 0.08397, 0.08467, 0.73322, 0.73499, 0.49436, 0.4896, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "India", "2015-05-01", "Adult", "Adult", "Fin", "Surface Structure"], [38035, "SRR1299126", "SRX553170", "SRS620469", "SRP042111", "PRJNA248169", "Danio rerio strain:Wild Transcriptome or Gene expression", "PRJNA248169", "Other", "Differential transcriptome map of Zebrafish Caudal fin", null, null, "One day time post treatment", null, "1DZF", null, "breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:1 day time point|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Danio rerio Transcriptome or Gene expression", "Danio rerioPRJNA248169 3", "1", "TruSeq adapter were used.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP042111", null, null, "1DZF-Danio_rerio_2R.fastq.bz2 1DZF-Danio_rerio_1R.fastq.bz2", "fastq fastq", 6719993388.0, 33267294.0, "1DZF", "0:101 1:101", "A:1893609768;C:1482166949;G:1462366567;T:1881531262;N:318842", 101, 101, null, null, 1893609768, 1482166949, 1462366567, 1881531262, 318842, "SRX553170", "SRS620469", "SRA166158", "CCMB|CCMB", "CCMB", 2, 0.92967, 0.93015, 0.08097, 0.08125, 0.74213, 0.74324, 0.47392, 0.48207, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "India", "2014-05-27", "Adult", "Adult", "Fin", "Surface Structure"], [38036, "SRR1299125", "SRX553169", "SRS620468", "SRP042111", "PRJNA248169", "Danio rerio strain:Wild Transcriptome or Gene expression", "PRJNA248169", "Other", "Differential transcriptome map of Zebrafish Caudal fin", null, null, "Half day time post treatment", null, "1 2DZF", null, "breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:Half day time point|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Danio rerio Transcriptome or Gene expression", "Danio rerioPRJNA248169 2", "1", "TruSeq adapter were used.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP042111", null, null, "1-2DZF-Danio_rerio_2R.fastq.bz2 1-2DZF-Danio_rerio_1R.fastq.bz2", "fastq fastq", 6236131678.0, 30871939.0, "1 2DZF", "0:101 1:101", "A:1762641472;C:1370283862;G:1350562716;T:1752265045;N:378583", 101, 101, null, null, 1762641472, 1370283862, 1350562716, 1752265045, 378583, "SRX553169", "SRS620468", "SRA166158", "CCMB|CCMB", "CCMB", 2, 0.92407, 0.92539, 0.08396, 0.08553, 0.74456, 0.74716, 0.50446, 0.51234, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "India", "2014-05-27", "Adult", "Adult", "Fin", "Surface Structure"], [38037, "SRR1299124", "SRX553168", "SRS620467", "SRP042111", "PRJNA248169", "Danio rerio strain:Wild Transcriptome or Gene expression", "PRJNA248169", "Other", "Differential transcriptome map of Zebrafish Caudal fin", null, null, "Zero day time post treatment", null, "0DZF", null, "breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:Zero day time point|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Danio rerio Transcriptome or Gene expression", "Danio rerioPRJNA248169", "1", "Truseq adapter were used.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP042111", null, null, "0DZF-Danio_rerio_1R.fastq.bz2 0DZF-Danio_rerio_2R.fastq.bz2", "fastq fastq", 6698814092.0, 33162446.0, "0DZF", "0:101 1:101", "A:1835032668;C:1528628655;G:1505878886;T:1828956105;N:317778", 101, 101, null, null, 1835032668, 1528628655, 1505878886, 1828956105, 317778, "SRX553168", "SRS620467", "SRA166158", "CCMB|CCMB", "CCMB", 2, 0.92038, 0.92069, 0.08892, 0.08995, 0.74511, 0.74686, 0.44111, 0.43423, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "India", "2015-05-01", "Adult", "Adult", "Fin", "Surface Structure"], [38116, "SRR1551799", "SRX681419", "SRS685080", "SRP045504", "PRJNA258223", "Danio rerio strain:TL Transcriptome or Gene expression", "PRJNA258223", "Other", "Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos", null, null, null, "keratocytes from 4dpf embryos", "keratocytes from 4dpf embryos", null, "breed:TL|strain:TL|age:4dpf|biomaterial provider:Julie Theriot  Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:4dpf|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "transcriptome from 4dpf keratocytes  replicate 3", "4dpf 3", "4dpf 3", "RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen.  Three biological replicates were collected for each developmental stage.  Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre.  The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate  1mM EDTA  pH 9.2 at 95 degrees.  To prepare cDNA  first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming  and second strand synthesis was performed with DNA Polymerase I NEB.  Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter.  Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer\u2019s instructions to generate 40nt single ended reads.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>40</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP045504", null, null, "lane4_4dpf707.fastq", "fastq", 1001179200.0, 25029480.0, "4dpf 3", "0:40", "A:253770714;C:242097985;G:244642013;T:260557997;N:110491", 40, null, null, null, 253770714, 242097985, 244642013, 260557997, 110491, "SRX681419", "SRS685080", "SRA179326", "Stanford University|Julie Theriot", "Stanford University", 1, 0.90546, null, 0.2101, null, 0.75185, null, 0.49242, null, 40, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2015-04-07", "Larval", "Larval", "Skin", "Surface Structure"], [38117, "SRR1551798", "SRX681418", "SRS685080", "SRP045504", "PRJNA258223", "Danio rerio strain:TL Transcriptome or Gene expression", "PRJNA258223", "Other", "Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos", null, null, null, "keratocytes from 4dpf embryos", "keratocytes from 4dpf embryos", null, "breed:TL|strain:TL|age:4dpf|biomaterial provider:Julie Theriot  Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:4dpf|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome from 4dpf keratocytes  replicate 2", "4dpf 2", "4dpf 2", "RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen.  Three biological replicates were collected for each developmental stage.  Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre.  The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate  1mM EDTA  pH 9.2 at 95 degrees.  To prepare cDNA  first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming  and second strand synthesis was performed with DNA Polymerase I NEB.  Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter.  Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer\u2019s instructions to generate 40nt single ended reads.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>40</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP045504", null, null, "lane7_4col.fastq", "fastq", 1700157430.0, 44740985.0, "4dpf 2", "0:38", "A:394789834;C:418821057;G:504852317;T:369111176;N:12583046", 38, null, null, null, 394789834, 418821057, 504852317, 369111176, 12583046, "SRX681418", "SRS685080", "SRA179326", "Stanford University|Julie Theriot", "Stanford University", 1, 0.68441, null, 0.12529, null, 0.8338, null, 0.45494, null, 38, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2014-08-14", "Larval", "Larval", "Skin", "Surface Structure"], [38118, "SRR1551797", "SRX681417", "SRS685080", "SRP045504", "PRJNA258223", "Danio rerio strain:TL Transcriptome or Gene expression", "PRJNA258223", "Other", "Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos", null, null, null, "keratocytes from 4dpf embryos", "keratocytes from 4dpf embryos", null, "breed:TL|strain:TL|age:4dpf|biomaterial provider:Julie Theriot  Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:4dpf|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "4dpf keratocyte transcriptome  replicate 1", "4dpf 1", "4dpf 1", "RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen.  Three biological replicates were collected for each developmental stage.  Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre.  The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate  1mM EDTA  pH 9.2 at 95 degrees.  To prepare cDNA  first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming  and second strand synthesis was performed with DNA Polymerase I NEB.  Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter.  Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer\u2019s instructions to generate 40nt single ended reads.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>47</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP045504", null, null, "lane7_1_4dpf.fastq", "fastq", 762138229.0, 16215707.0, "4dpf 1", "0:47", "A:183899711;C:180347476;G:190086042;T:189460942;N:18344058", 47, null, null, null, 183899711, 180347476, 190086042, 189460942, 18344058, "SRX681417", "SRS685080", "SRA179326", "Stanford University|Julie Theriot", "Stanford University", 1, 0.85884, null, 0.2135, null, 0.80077, null, 0.50539, null, 47, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2014-08-15", "Larval", "Larval", "Skin", "Surface Structure"], [38119, "SRR1551796", "SRX681416", "SRS685079", "SRP045504", "PRJNA258223", "Danio rerio strain:TL Transcriptome or Gene expression", "PRJNA258223", "Other", "Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos", null, null, null, "Transcriptome from 2dpf keratocytes", "keratocytes from 2dpf embryos", null, "breed:TL|strain:TL|age:2dpf|biomaterial provider:Julie Theriot  Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:2dpf|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome from 2dpf keratocytes  replicate 3", "2dpf 3", "2dpf 3", "RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen.  Three biological replicates were collected for each developmental stage.  Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre.  The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate  1mM EDTA  pH 9.2 at 95 degrees.  To prepare cDNA  first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming  and second strand synthesis was performed with DNA Polymerase I NEB.  Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter.  Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer\u2019s instructions to generate 40nt single ended reads.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>40</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP045504", null, null, "lane3_2dpf629.fastq", "fastq", 551787520.0, 13794688.0, "2dpf 3", "0:40", "A:138660463;C:132605577;G:134640312;T:145852714;N:28454", 40, null, null, null, 138660463, 132605577, 134640312, 145852714, 28454, "SRX681416", "SRS685079", "SRA179323", "Stanford University|Julie Theriot", "Stanford University", 1, 0.91375, null, 0.21598, null, 0.75317, null, 0.47881, null, 40, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2014-08-14", "Hatching", "Embryo", "Skin", "Surface Structure"], [38120, "SRR1551795", "SRX681415", "SRS685079", "SRP045504", "PRJNA258223", "Danio rerio strain:TL Transcriptome or Gene expression", "PRJNA258223", "Other", "Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos", null, null, null, "Transcriptome from 2dpf keratocytes", "keratocytes from 2dpf embryos", null, "breed:TL|strain:TL|age:2dpf|biomaterial provider:Julie Theriot  Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:2dpf|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome from 2dpf keratocytes", "2dpf 2", "2dpf 2", "RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen.  Three biological replicates were collected for each developmental stage.  Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre.  The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate  1mM EDTA  pH 9.2 at 95 degrees.  To prepare cDNA  first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming  and second strand synthesis was performed with DNA Polymerase I NEB.  Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter.  Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer\u2019s instructions to generate 40nt single ended reads.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>40</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP045504", null, null, "lane1_2dpf.fastq", "fastq", 796874112.0, 22135392.0, "2dpf 2", "0:36", "A:209956517;C:184659684;G:185142987;T:216055902;N:1059022", 36, null, null, null, 209956517, 184659684, 185142987, 216055902, 1059022, "SRX681415", "SRS685079", "SRA179323", "Stanford University|Julie Theriot", "Stanford University", 1, 0.89178, null, 0.17837, null, 0.7609, null, 0.49774, null, 36, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2015-04-07", "Hatching", "Embryo", "Skin", "Surface Structure"], [38121, "SRR1551782", "SRX681402", "SRS685079", "SRP045504", "PRJNA258223", "Danio rerio strain:TL Transcriptome or Gene expression", "PRJNA258223", "Other", "Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos", null, null, null, "Transcriptome from 2dpf keratocytes", "keratocytes from 2dpf embryos", null, "breed:TL|strain:TL|age:2dpf|biomaterial provider:Julie Theriot  Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:2dpf|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "2dpf keratocytes  replicate 1", "2dpf 1", "2dpf 1", "RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen.  Three biological replicates were collected for each developmental stage.  Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre.  The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate  1mM EDTA  pH 9.2 at 95 degrees.  To prepare cDNA  first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming  and second strand synthesis was performed with DNA Polymerase I NEB.  Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter.  Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer\u2019s instructions to generate 40nt single ended reads.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>40</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP045504", null, null, "lane6_2dpf.fastq", "fastq", 647944118.0, 17051161.0, "2dpf 1", "0:38", "A:145735255;C:167786338;G:186677806;T:141598169;N:6146550", 38, null, null, null, 145735255, 167786338, 186677806, 141598169, 6146550, "SRX681402", "SRS685079", "SRA179323", "Stanford University|Julie Theriot", "Stanford University", 1, 0.7695, null, 0.15816, null, 0.81491, null, 0.44972, null, 38, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2014-08-14", "Hatching", "Embryo", "Skin", "Surface Structure"], [47613, "SRR6760977", "SRX3733411", "SRS2990508", "SRP133266", "PRJNA434353", "Transcriptome assemblies 10 vertebrate species", "PRJNA434353", "Other", "2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human  mouse  cow  tasmanian devil  chicken  duck  zebra finch  xenopus  medaka and zebrafish  4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.", null, null, "4 replicates", null, "Zebrafish", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome assemblies 10 vertebrate species", "zebrafish replicate2", "zebrafish replicate2", "Zebrafish sample replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP133266", null, null, "Sample_imb_butter_2014_04_30_zebrafish_B_R2.fastq.gz Sample_imb_butter_2014_04_30_zebrafish_B_R1.fastq.gz", "fastq fastq", 8021078014.0, 39708307.0, "Sample imb butter 2014 04 30 zebrafish B R2.fastq.gz", "0:101 1:101", "A:2198831905;C:1810184353;G:1779924959;T:2210094554;N:22042243", 101, 101, null, null, 2198831905, 1810184353, 1779924959, 2210094554, 22042243, "SRX3733411", "SRS2990508", "SRA660975", "Institute of Molecular Biology|Quantitative Proteomics", "Institute of Molecular Biology", 2, 0.94194, 0.93911, 0.07724, 0.08406, 0.75724, 0.75558, 0.47712, 0.49049, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2019-02-15", "Undetermined", "Undetermined", "Scale", "Surface Structure"], [47614, "SRR6760978", "SRX3733410", "SRS2990508", "SRP133266", "PRJNA434353", "Transcriptome assemblies 10 vertebrate species", "PRJNA434353", "Other", "2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human  mouse  cow  tasmanian devil  chicken  duck  zebra finch  xenopus  medaka and zebrafish  4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.", null, null, "4 replicates", null, "Zebrafish", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome assemblies 10 vertebrate species", "zebrafish replicate1", "zebrafish replicate1", "Zebrafish sample replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP133266", null, null, "Sample_imb_butter_2014_04_29_zebrafish_A_R1.fastq.gz Sample_imb_butter_2014_04_29_zebrafish_A_R2.fastq.gz", "fastq fastq", 7117920864.0, 35237232.0, "Sample imb butter 2014 04 29 zebrafish A R2.fastq.gz", "0:101 1:101", "A:1980152632;C:1580333689;G:1558362064;T:1979596193;N:19476286", 101, 101, null, null, 1980152632, 1580333689, 1558362064, 1979596193, 19476286, "SRX3733410", "SRS2990508", "SRA660975", "Institute of Molecular Biology|Quantitative Proteomics", "Institute of Molecular Biology", 2, 0.9342, 0.93044, 0.08741, 0.09642, 0.75674, 0.75497, 0.49192, 0.46492, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2018-02-22", "Undetermined", "Undetermined", "Scale", "Surface Structure"], [47615, "SRR6760981", "SRX3733407", "SRS2990508", "SRP133266", "PRJNA434353", "Transcriptome assemblies 10 vertebrate species", "PRJNA434353", "Other", "2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human  mouse  cow  tasmanian devil  chicken  duck  zebra finch  xenopus  medaka and zebrafish  4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.", null, null, "4 replicates", null, "Zebrafish", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome assemblies 10 vertebrate species", "zebrafish replicate4", "zebrafish replicate4", "Zebrafish sample replicate 4", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP133266", null, null, "Sample_imb_butter_2014_04_32_zebrafish_D_R1.fastq.gz Sample_imb_butter_2014_04_32_zebrafish_D_R2.fastq.gz", "fastq fastq", 8570683654.0, 42429127.0, "Sample imb butter 2014 04 32 zebrafish D R1.fastq.gz", "0:101 1:101", "A:2343151377;C:1943560489;G:1909682494;T:2350658549;N:23630745", 101, 101, null, null, 2343151377, 1943560489, 1909682494, 2350658549, 23630745, "SRX3733407", "SRS2990508", "SRA660975", "Institute of Molecular Biology|Quantitative Proteomics", "Institute of Molecular Biology", 2, 0.94036, 0.94349, 0.0838, 0.0779, 0.75538, 0.75737, 0.4881, 0.48296, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2019-02-15", "Undetermined", "Undetermined", "Scale", "Surface Structure"], [47616, "SRR6760982", "SRX3733406", "SRS2990508", "SRP133266", "PRJNA434353", "Transcriptome assemblies 10 vertebrate species", "PRJNA434353", "Other", "2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human  mouse  cow  tasmanian devil  chicken  duck  zebra finch  xenopus  medaka and zebrafish  4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.", null, null, "4 replicates", null, "Zebrafish", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome assemblies 10 vertebrate species", "zebrafish replicate3", "zebrafish replicate3", "Zebrafish sample replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP133266", null, null, "Sample_imb_butter_2014_04_31_zebrafish_C_R1.fastq.gz Sample_imb_butter_2014_04_31_zebrafish_C_R2.fastq.gz", "fastq fastq", 5889796416.0, 29157408.0, "Sample imb butter 2014 04 31 zebrafish C R1.fastq.gz", "0:101 1:101", "A:1629550499;C:1313886355;G:1293890602;T:1636478119;N:15990841", 101, 101, null, null, 1629550499, 1313886355, 1293890602, 1636478119, 15990841, "SRX3733406", "SRS2990508", "SRA660975", "Institute of Molecular Biology|Quantitative Proteomics", "Institute of Molecular Biology", 2, 0.93285, 0.93628, 0.09745, 0.0871, 0.7586, 0.7611, 0.47374, 0.47763, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2018-02-22", "Undetermined", "Undetermined", "Scale", "Surface Structure"], [53654, "SRR10010335", "SRX6748603", "SRS5298717", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 11", "35dpf nr5a1a nr5a1b double mutant 11", "35dpf nr5a1a nr5a1b double mutant 11", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab35dmut-11_combined_R1.fq.gz nr5a1ab35dmut-11_combined_R2.fq.gz", "fastq fastq", 5464020164.0, 18092782.0, "nr5a1ab35dmut 11 combined R1.fq.gz", "0:151 1:151", "A:1417197935;C:1238763491;G:1264099371;T:1543026312;N:933055", 151, 151, null, null, 1417197935, 1238763491, 1264099371, 1543026312, 933055, "SRX6748603", "SRS5298717", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.82573, 0.85627, 0.0768, 0.06148, 0.75704, 0.76017, 0.49566, 0.58424, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53655, "SRR10010336", "SRX6748602", "SRS5298716", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1b mutant 7", "35dpf nr5a1b mutant 7", "35dpf nr5a1b mutant 7", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b35dmut-7_combined_R1.fq.gz nr5a1b35dmut-7_combined_R2.fq.gz", "fastq fastq", 2116406940.0, 7007970.0, "nr5a1b35dmut 7 combined R1.fq.gz", "0:151 1:151", "A:534677619;C:494553805;G:503529167;T:583343323;N:303026", 151, 151, null, null, 534677619, 494553805, 503529167, 583343323, 303026, "SRX6748602", "SRS5298716", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.89953, 0.9204, 0.08475, 0.06359, 0.75069, 0.75615, 0.5203, 0.5919, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53656, "SRR10010337", "SRX6748601", "SRS5298717", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 10", "35dpf nr5a1a nr5a1b double mutant 10", "35dpf nr5a1a nr5a1b double mutant 10", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab35dmut-10_combined_R1.fq.gz nr5a1ab35dmut-10_combined_R2.fq.gz", "fastq fastq", 3016366034.0, 9987967.0, "nr5a1ab35dmut 10 combined R1.fq.gz", "0:151 1:151", "A:752733986;C:720025699;G:731849549;T:811247600;N:509200", 151, 151, null, null, 752733986, 720025699, 731849549, 811247600, 509200, "SRX6748601", "SRS5298717", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90615, 0.91707, 0.11046, 0.07981, 0.74651, 0.74966, 0.49676, 0.60165, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53657, "SRR10010338", "SRX6748600", "SRS5298717", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 9", "35dpf nr5a1a nr5a1b double mutant 9", "35dpf nr5a1a nr5a1b double mutant 9", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab35dmut-9_combined_R1.fq.gz nr5a1ab35dmut-9_combined_R2.fq.gz", "fastq fastq", 3569050194.0, 11818047.0, "nr5a1ab35dmut 9 combined R1.fq.gz", "0:151 1:151", "A:899915774;C:849832234;G:859458329;T:959242263;N:601594", 151, 151, null, null, 899915774, 849832234, 859458329, 959242263, 601594, "SRX6748600", "SRS5298717", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.88978, 0.9004, 0.09772, 0.07218, 0.74799, 0.74968, 0.51174, 0.6088, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53658, "SRR10010339", "SRX6748599", "SRS5298717", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 2", "35dpf nr5a1a nr5a1b double mutant 2", "35dpf nr5a1a nr5a1b double mutant 2", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab35dmut-2_combined_R1.fq.gz nr5a1ab35dmut-2_combined_R2.fq.gz", "fastq fastq", 2828323922.0, 9365311.0, "nr5a1ab35dmut 2 combined R1.fq.gz", "0:151 1:151", "A:691090279;C:673032167;G:684529355;T:779155559;N:516562", 151, 151, null, null, 691090279, 673032167, 684529355, 779155559, 516562, "SRX6748599", "SRS5298717", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.8834, 0.9068, 0.11546, 0.07455, 0.75503, 0.75615, 0.51068, 0.61929, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53659, "SRR10010340", "SRX6748598", "SRS5298717", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 1", "35dpf nr5a1a nr5a1b double mutant 1", "35dpf nr5a1a nr5a1b double mutant 1", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab35dmut-1_combined_R1.fq.gz nr5a1ab35dmut-1_combined_R2.fq.gz", "fastq fastq", 3461567790.0, 11462145.0, "nr5a1ab35dmut 1 combined R1.fq.gz", "0:151 1:151", "A:863912807;C:826288038;G:844009627;T:926819831;N:537487", 151, 151, null, null, 863912807, 826288038, 844009627, 926819831, 537487, "SRX6748598", "SRS5298717", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90732, 0.91778, 0.10103, 0.06771, 0.74026, 0.74619, 0.50631, 0.59632, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53660, "SRR10010341", "SRX6748597", "SRS5298716", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1b mutant 4", "35dpf nr5a1b mutant 4", "35dpf nr5a1b mutant 4", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b35dmut-4_combined_R1.fq.gz nr5a1b35dmut-4_combined_R2.fq.gz", "fastq fastq", 2823289582.0, 9348641.0, "nr5a1b35dmut 4 combined R1.fq.gz", "0:151 1:151", "A:692918043;C:667773087;G:683991041;T:778117057;N:490354", 151, 151, null, null, 692918043, 667773087, 683991041, 778117057, 490354, "SRX6748597", "SRS5298716", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.89649, 0.92027, 0.09415, 0.06385, 0.75463, 0.75883, 0.48098, 0.58128, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53661, "SRR10010342", "SRX6748596", "SRS5298717", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 14", "35dpf nr5a1a nr5a1b double mutant 14", "35dpf nr5a1a nr5a1b double mutant 14", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab35dmut-14_combined_R1.fq.gz nr5a1ab35dmut-14_combined_R2.fq.gz", "fastq fastq", 2662720410.0, 8816955.0, "nr5a1ab35dmut 14 combined R1.fq.gz", "0:151 1:151", "A:665577500;C:635869780;G:647241076;T:713592928;N:439126", 151, 151, null, null, 665577500, 635869780, 647241076, 713592928, 439126, "SRX6748596", "SRS5298717", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90062, 0.91305, 0.1132, 0.08326, 0.75339, 0.7555, 0.49702, 0.59781, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53662, "SRR10010343", "SRX6748595", "SRS5298720", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1b mutant 7", "21dpf nr5a1b mutant 7", "21dpf nr5a1b mutant 7", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b21dmut-7_combined_R1.fq.gz nr5a1b21dmut-7_combined_R2.fq.gz", "fastq fastq", 3413772968.0, 11303884.0, "nr5a1b21dmut 7 combined R1.fq.gz", "0:151 1:151", "A:866277297;C:793136535;G:808490993;T:945306139;N:562004", 151, 151, null, null, 866277297, 793136535, 808490993, 945306139, 562004, "SRX6748595", "SRS5298720", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90038, 0.9162, 0.09303, 0.06982, 0.74637, 0.74738, 0.49835, 0.58029, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53663, "SRR10010344", "SRX6748594", "SRS5298720", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1b mutant 8", "21dpf nr5a1b mutant 8", "21dpf nr5a1b mutant 8", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b21dmut-8_combined_R1.fq.gz nr5a1b21dmut-8_combined_R2.fq.gz", "fastq fastq", 4840911718.0, 16029509.0, "nr5a1b21dmut 8 combined R1.fq.gz", "0:151 1:151", "A:1202544092;C:1166760381;G:1186843611;T:1283964664;N:798970", 151, 151, null, null, 1202544092, 1166760381, 1186843611, 1283964664, 798970, "SRX6748594", "SRS5298720", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.9056, 0.91348, 0.12201, 0.08631, 0.72845, 0.73336, 0.45147, 0.53636, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53664, "SRR10010345", "SRX6748593", "SRS5298716", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1b mutant 1", "35dpf nr5a1b mutant 1", "35dpf nr5a1b mutant 1", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b35dmut-1_combined_R1.fq.gz nr5a1b35dmut-1_combined_R2.fq.gz", "fastq fastq", 3080371310.0, 10199905.0, "nr5a1b35dmut 1 combined R1.fq.gz", "0:151 1:151", "A:749979603;C:751889973;G:770422909;T:807597821;N:481004", 151, 151, null, null, 749979603, 751889973, 770422909, 807597821, 481004, "SRX6748593", "SRS5298716", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.91959, 0.93095, 0.11586, 0.07628, 0.76187, 0.76562, 0.49454, 0.57785, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53665, "SRR10010346", "SRX6748592", "SRS5298716", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1b", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1b mutant 2", "35dpf nr5a1b mutant 2", "35dpf nr5a1b mutant 2", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b35dmut-2_combined_R1.fq.gz nr5a1b35dmut-2_combined_R2.fq.gz", "fastq fastq", 3633938820.0, 12032910.0, "nr5a1b35dmut 2 combined R1.fq.gz", "0:151 1:151", "A:905316417;C:865468187;G:876812140;T:985720508;N:621568", 151, 151, null, null, 905316417, 865468187, 876812140, 985720508, 621568, "SRX6748592", "SRS5298716", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.8972, 0.91027, 0.11437, 0.07781, 0.74099, 0.74446, 0.4981, 0.60461, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53666, "SRR10010347", "SRX6748591", "SRS5298720", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1b mutant 3", "21dpf nr5a1b mutant 3", "21dpf nr5a1b mutant 3", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b21dmut-3_combined_R1.fq.gz nr5a1b21dmut-3_combined_R2.fq.gz", "fastq fastq", 2010998370.0, 6658935.0, "nr5a1b21dmut 3 combined R1.fq.gz", "0:151 1:151", "A:510741274;C:461058309;G:465853553;T:573016929;N:328305", 151, 151, null, null, 510741274, 461058309, 465853553, 573016929, 328305, "SRX6748591", "SRS5298720", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.87512, 0.8951, 0.10891, 0.08286, 0.74759, 0.74882, 0.51531, 0.57614, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53667, "SRR10010348", "SRX6748590", "SRS5298720", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1b mutant 4", "21dpf nr5a1b mutant 4", "21dpf nr5a1b mutant 4", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1b21dmut-4_combined_R1.fq.gz nr5a1b21dmut-4_combined_R2.fq.gz", "fastq fastq", 2838303512.0, 9398356.0, "nr5a1b21dmut 4 combined R1.fq.gz", "0:151 1:151", "A:696399092;C:677565241;G:694174849;T:769657171;N:507159", 151, 151, null, null, 696399092, 677565241, 694174849, 769657171, 507159, "SRX6748590", "SRS5298720", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.88814, 0.90692, 0.10219, 0.06896, 0.74207, 0.74186, 0.47224, 0.56972, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53668, "SRR10010349", "SRX6748589", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 7", "21dpf nr5a1a nr5a1b double mutant 7", "21dpf nr5a1a nr5a1b double mutant 7", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-7_combined_R1.fq.gz nr5a1ab21dmut-7_combined_R2.fq.gz", "fastq fastq", 4301143494.0, 14242197.0, "nr5a1ab21dmut 7 combined R1.fq.gz", "0:151 1:151", "A:1037292424;C:1070782216;G:1085961255;T:1106426728;N:680871", 151, 151, null, null, 1037292424, 1070782216, 1085961255, 1106426728, 680871, "SRX6748589", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.92203, 0.92848, 0.14359, 0.09024, 0.76449, 0.76852, 0.45779, 0.57313, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53669, "SRR10010350", "SRX6748588", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 8", "21dpf nr5a1a nr5a1b double mutant 8", "21dpf nr5a1a nr5a1b double mutant 8", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-8_combined_R1.fq.gz nr5a1ab21dmut-8_combined_R2.fq.gz", "fastq fastq", 3463183188.0, 11467494.0, "nr5a1ab21dmut 8 combined R1.fq.gz", "0:151 1:151", "A:873871340;C:824464048;G:837882345;T:926409947;N:555508", 151, 151, null, null, 873871340, 824464048, 837882345, 926409947, 555508, "SRX6748588", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90477, 0.9091, 0.09733, 0.07335, 0.73768, 0.74083, 0.47337, 0.54642, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53670, "SRR10010351", "SRX6748587", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 5", "21dpf nr5a1a nr5a1b double mutant 5", "21dpf nr5a1a nr5a1b double mutant 5", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-5_combined_R1.fq.gz nr5a1ab21dmut-5_combined_R2.fq.gz", "fastq fastq", 2105581146.0, 6972123.0, "nr5a1ab21dmut 5 combined R1.fq.gz", "0:151 1:151", "A:539297149;C:475252041;G:487324441;T:603338432;N:369083", 151, 151, null, null, 539297149, 475252041, 487324441, 603338432, 369083, "SRX6748587", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.83588, 0.86367, 0.07285, 0.05907, 0.74795, 0.74789, 0.50471, 0.57306, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53671, "SRR10010352", "SRX6748586", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 6", "21dpf nr5a1a nr5a1b double mutant 6", "21dpf nr5a1a nr5a1b double mutant 6", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-6_combined_R1.fq.gz nr5a1ab21dmut-6_combined_R2.fq.gz", "fastq fastq", 2160567192.0, 7154196.0, "nr5a1ab21dmut 6 combined R1.fq.gz", "0:151 1:151", "A:549656125;C:499912370;G:508304192;T:602348154;N:346351", 151, 151, null, null, 549656125, 499912370, 508304192, 602348154, 346351, "SRX6748586", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.88824, 0.90531, 0.11055, 0.0875, 0.70554, 0.70859, 0.48379, 0.54732, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53672, "SRR10010353", "SRX6748585", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 3", "21dpf nr5a1a nr5a1b double mutant 3", "21dpf nr5a1a nr5a1b double mutant 3", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-3_combined_R1.fq.gz nr5a1ab21dmut-3_combined_R2.fq.gz", "fastq fastq", 1850334974.0, 6126937.0, "nr5a1ab21dmut 3 combined R1.fq.gz", "0:151 1:151", "A:470148849;C:425157376;G:428614793;T:526090487;N:323469", 151, 151, null, null, 470148849, 425157376, 428614793, 526090487, 323469, "SRX6748585", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.86747, 0.88781, 0.13442, 0.09954, 0.7514, 0.75091, 0.4841, 0.58575, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53673, "SRR10010354", "SRX6748584", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 4", "21dpf nr5a1a nr5a1b double mutant 4", "21dpf nr5a1a nr5a1b double mutant 4", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-4_combined_R1.fq.gz nr5a1ab21dmut-4_combined_R2.fq.gz", "fastq fastq", 4174074276.0, 13821438.0, "nr5a1ab21dmut 4 combined R1.fq.gz", "0:151 1:151", "A:1056833741;C:976094817;G:994472897;T:1145958470;N:714351", 151, 151, null, null, 1056833741, 976094817, 994472897, 1145958470, 714351, "SRX6748584", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.89035, 0.89997, 0.10027, 0.07415, 0.7264, 0.72829, 0.48572, 0.57325, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53674, "SRR10010355", "SRX6748583", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 1", "21dpf nr5a1a nr5a1b double mutant 1", "21dpf nr5a1a nr5a1b double mutant 1", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-1_combined_R1.fq.gz nr5a1ab21dmut-1_combined_R2.fq.gz", "fastq fastq", 2417465606.0, 8004853.0, "nr5a1ab21dmut 1 combined R1.fq.gz", "0:151 1:151", "A:581742121;C:593490135;G:604923946;T:636944229;N:365175", 151, 151, null, null, 581742121, 593490135, 604923946, 636944229, 365175, "SRX6748583", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.91256, 0.92768, 0.16171, 0.10389, 0.7525, 0.75645, 0.41647, 0.53108, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53675, "SRR10010356", "SRX6748582", "SRS5298723", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "21dpf nr5a1a nr5a1b", null, "strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 2", "21dpf nr5a1a nr5a1b double mutant 2", "21dpf nr5a1a nr5a1b double mutant 2", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1ab21dmut-2_combined_R1.fq.gz nr5a1ab21dmut-2_combined_R2.fq.gz", "fastq fastq", 3285689634.0, 10879767.0, "nr5a1ab21dmut 2 combined R1.fq.gz", "0:151 1:151", "A:808126419;C:794634133;G:804858824;T:877512631;N:557627", 151, 151, null, null, 808126419, 794634133, 804858824, 877512631, 557627, "SRX6748582", "SRS5298723", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90624, 0.91945, 0.14324, 0.09474, 0.74556, 0.74901, 0.46293, 0.60218, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Larval", "Larval", "Trunk", "Surface Structure"], [53676, "SRR10010357", "SRX6748581", "SRS5298719", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a mutant 7", "35dpf nr5a1a mutant 7", "35dpf nr5a1a mutant 7", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1a35dmut-7_combined_R1.fq.gz nr5a1a35dmut-7_combined_R2.fq.gz", "fastq fastq", 2969897294.0, 9834097.0, "nr5a1a35dmut 7 combined R1.fq.gz", "0:151 1:151", "A:752593200;C:695994377;G:707935979;T:812884925;N:488813", 151, 151, null, null, 752593200, 695994377, 707935979, 812884925, 488813, "SRX6748581", "SRS5298719", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.89218, 0.906, 0.09342, 0.07022, 0.73795, 0.73898, 0.51281, 0.5911, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53677, "SRR10010358", "SRX6748580", "SRS5298719", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf nr5a1a", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf nr5a1a mutant 8", "35dpf nr5a1a mutant 8", "35dpf nr5a1a mutant 8", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1a35dmut-8_combined_R1.fq.gz nr5a1a35dmut-8_combined_R2.fq.gz", "fastq fastq", 6225038118.0, 20612709.0, "nr5a1a35dmut 8 combined R1.fq.gz", "0:151 1:151", "A:1559098665;C:1505493891;G:1534176065;T:1625255981;N:1013516", 151, 151, null, null, 1559098665, 1505493891, 1534176065, 1625255981, 1013516, "SRX6748580", "SRS5298719", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.90023, 0.90282, 0.09369, 0.06592, 0.73525, 0.73854, 0.50906, 0.59368, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53678, "SRR10010359", "SRX6748579", "SRS5298721", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf wildtype", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf wild type 2", "35dpf wild type 2", "35dpf wild type 2", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1_35day_WT-2_combined_R1.fq.gz nr5a1_35day_WT-2_combined_R2.fq.gz", "fastq fastq", 4142275186.0, 13716143.0, "nr5a1 35day WT 2 combined R1.fq.gz", "0:151 1:151", "A:1055251193;C:967398418;G:984879234;T:1134062187;N:684154", 151, 151, null, null, 1055251193, 967398418, 984879234, 1134062187, 684154, "SRX6748579", "SRS5298721", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.89791, 0.91014, 0.09157, 0.06806, 0.73927, 0.74067, 0.515, 0.58656, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53679, "SRR10010360", "SRX6748578", "SRS5298721", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf wildtype", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf wild type 3", "35dpf wild type 3", "35dpf wild type 3", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1_35day_WT-3_combined_R2.fq.gz nr5a1_35day_WT-3_combined_R1.fq.gz", "fastq fastq", 2471376532.0, 8183366.0, "nr5a1 35day WT 3 combined R1.fq.gz", "0:151 1:151", "A:615088670;C:576161730;G:582945558;T:696743565;N:437009", 151, 151, null, null, 615088670, 576161730, 582945558, 696743565, 437009, "SRX6748578", "SRS5298721", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.87753, 0.90284, 0.1111, 0.07857, 0.72563, 0.72794, 0.50927, 0.59766, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"], [53680, "SRR10010361", "SRX6748577", "SRS5298721", "SRP219014", "PRJNA561212", "RNA Seq of nr5a1a and nr5a1b mutant zebrafish", "PRJNA561212", "Transcriptome Analysis", "Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.", null, null, null, null, "35dpf wildtype", null, "strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 35dpf wild type 4", "35dpf wild type 4", "35dpf wild type 4", "Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP219014", null, null, "nr5a1_35day_WT-4_combined_R1.fq.gz nr5a1_35day_WT-4_combined_R2.fq.gz", "fastq fastq", 2116363754.0, 7007827.0, "nr5a1 35day WT 4 combined R1.fq.gz", "0:151 1:151", "A:517886726;C:489788898;G:502421580;T:605882187;N:384363", 151, 151, null, null, 517886726, 489788898, 502421580, 605882187, 384363, "SRX6748577", "SRS5298721", "SRA946180", "University of Oregon|Institute of Neuroscience", "University of Oregon", 2, 0.87446, 0.91282, 0.08961, 0.06167, 0.75325, 0.75363, 0.50444, 0.58991, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-08-21", "Juvenile", "Juvenile", "Trunk", "Surface Structure"]], "truncated": false, "filtered_table_rows_count": 161, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", 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"toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PolyA&tissue_curation_coarse=Surface+Structure&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PolyA&tissue_curation_coarse=Surface+Structure", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 152, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PolyA&tissue_curation_coarse=Surface+Structure&experiment.platform=ILLUMINA", "selected": false}, {"value": "DNBSEQ", "label": "DNBSEQ", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PolyA&tissue_curation_coarse=Surface+Structure&experiment.platform=DNBSEQ", "selected": false}], "truncated": false}, 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