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TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT5S8L001-1.fastq.gz", "fastq", 652046291.0, 8633105.0, "E MTAB 11505:sv2aWT5S8L001", "0:75.53 1:0", "A:159570243;C:156420495;G:154853315;T:181073030;N:129208", 75, 0, null, null, 159570243, 156420495, 154853315, 181073030, 129208, "ERX8620336", "ERS10857224", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95245, null, 0.1148, null, 0.65756, null, 0.47011, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10408, "ERR9077203", "ERX8620336", "ERS10857224", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT5S8", "SAMEA13254181", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT5S8 s", "Sv2aWT5S8 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT5S8L002-1.fastq.gz", "fastq", 653840525.0, 8656886.0, "E MTAB 11505:sv2aWT5S8L002", "0:75.53 1:0", "A:159902458;C:156826842;G:155509070;T:181475104;N:127051", 75, 0, null, null, 159902458, 156826842, 155509070, 181475104, 127051, "ERX8620336", "ERS10857224", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95226, null, 0.1156, null, 0.65792, null, 0.4667, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10409, "ERR9077204", "ERX8620336", "ERS10857224", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT5S8", "SAMEA13254181", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT5S8 s", "Sv2aWT5S8 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT5S8", "SAMEA13254181", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT5S8 s", "Sv2aWT5S8 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT4S7", "SAMEA13254180", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT4S7 s", "Sv2aWT4S7 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT4S7L001-1.fastq.gz", "fastq", 683751258.0, 9051795.0, "E MTAB 11505:sv2aWT4S7L001", "0:75.54 1:0", "A:162889923;C:167127644;G:164779384;T:188822907;N:131400", 75, 0, null, null, 162889923, 167127644, 164779384, 188822907, 131400, "ERX8620335", "ERS10857223", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95739, null, 0.0959, null, 0.6606, null, 0.46826, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10412, "ERR9077199", "ERX8620335", "ERS10857223", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT4S7", "SAMEA13254180", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT4S7 s", "Sv2aWT4S7 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT4S7", "SAMEA13254180", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT4S7 s", "Sv2aWT4S7 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT4S7L003-1.fastq.gz", "fastq", 692320213.0, 9165132.0, "E MTAB 11505:sv2aWT4S7L003", "0:75.54 1:0", "A:164772792;C:169329920;G:166952052;T:191164422;N:101027", 75, 0, null, null, 164772792, 169329920, 166952052, 191164422, 101027, "ERX8620335", "ERS10857223", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95786, null, 0.09701, null, 0.66131, null, 0.47564, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10414, "ERR9077201", "ERX8620335", "ERS10857223", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT4S7", "SAMEA13254180", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT4S7 s", "Sv2aWT4S7 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT4S7L004-1.fastq.gz", "fastq", 697047881.0, 9227702.0, "E MTAB 11505:sv2aWT4S7L004", "0:75.54 1:0", "A:165881728;C:170388393;G:168105900;T:192572068;N:99792", 75, 0, null, null, 165881728, 170388393, 168105900, 192572068, 99792, "ERX8620335", "ERS10857223", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.9584, null, 0.09565, null, 0.66115, null, 0.46967, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10415, "ERR9077194", "ERX8620334", "ERS10857222", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT3S2", "SAMEA13254179", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT3S2 s", "Sv2aWT3S2 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT3S2L001-1.fastq.gz", "fastq", 723508205.0, 9579193.0, "E MTAB 11505:sv2aWT3S2L001", "0:75.53 1:0", "A:177832489;C:174193135;G:169978598;T:201360184;N:143799", 75, 0, null, null, 177832489, 174193135, 169978598, 201360184, 143799, "ERX8620334", "ERS10857222", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95218, null, 0.11732, null, 0.65916, null, 0.47955, null, 71, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10416, "ERR9077195", "ERX8620334", "ERS10857222", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT3S2", "SAMEA13254179", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT3S2 s", "Sv2aWT3S2 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT3S2L002-1.fastq.gz", "fastq", 726190024.0, 9614674.0, "E MTAB 11505:sv2aWT3S2L002", "0:75.53 1:0", "A:178408224;C:174776263;G:170820745;T:202047224;N:137568", 75, 0, null, null, 178408224, 174776263, 170820745, 202047224, 137568, "ERX8620334", "ERS10857222", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95093, null, 0.11567, null, 0.65865, null, 0.46877, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10417, "ERR9077196", "ERX8620334", "ERS10857222", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT3S2", "SAMEA13254179", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT3S2 s", "Sv2aWT3S2 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT3S2L003-1.fastq.gz", "fastq", 735499955.0, 9737845.0, "E MTAB 11505:sv2aWT3S2L003", "0:75.53 1:0", "A:180659962;C:177141362;G:172905323;T:204678308;N:115000", 75, 0, null, null, 180659962, 177141362, 172905323, 204678308, 115000, "ERX8620334", "ERS10857222", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95233, null, 0.11614, null, 0.65898, null, 0.47114, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10418, "ERR9077197", "ERX8620334", "ERS10857222", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT3S2", "SAMEA13254179", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT3S2 s", "Sv2aWT3S2 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT3S2L004-1.fastq.gz", "fastq", 745285512.0, 9867337.0, "E MTAB 11505:sv2aWT3S2L004", "0:75.53 1:0", "A:183067487;C:179408382;G:175250814;T:207445912;N:112917", 75, 0, null, null, 183067487, 179408382, 175250814, 207445912, 112917, "ERX8620334", "ERS10857222", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95245, null, 0.11655, null, 0.65857, null, 0.47087, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10419, "ERR9077190", "ERX8620333", "ERS10857221", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT1S1", "SAMEA13254178", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT1S1 s", "Sv2aWT1S1 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT1S1L001-1.fastq.gz", "fastq", 647414748.0, 8571883.0, "E MTAB 11505:sv2aWT1S1L001", "0:75.53 1:0", "A:154593859;C:160498057;G:153809612;T:178389112;N:124108", 75, 0, null, null, 154593859, 160498057, 153809612, 178389112, 124108, "ERX8620333", "ERS10857221", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95955, null, 0.08686, null, 0.65955, null, 0.47406, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10420, "ERR9077191", "ERX8620333", "ERS10857221", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT1S1", "SAMEA13254178", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT1S1 s", "Sv2aWT1S1 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/+", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aWT1S1L002-1.fastq.gz", "fastq", 646657758.0, 8561861.0, "E MTAB 11505:sv2aWT1S1L002", "0:75.53 1:0", "A:154348044;C:160294625;G:153804048;T:178092212;N:118829", 75, 0, null, null, 154348044, 160294625, 153804048, 178092212, 118829, "ERX8620333", "ERS10857221", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95942, null, 0.08632, null, 0.65991, null, 0.47539, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10421, "ERR9077192", "ERX8620333", "ERS10857221", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT1S1", "SAMEA13254178", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT1S1 s", "Sv2aWT1S1 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aWT1S1", "SAMEA13254178", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aWT1S1 s", "Sv2aWT1S1 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO6S12", "SAMEA13254177", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO6S12 s", "Sv2aHO6S12 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO6S12", "SAMEA13254177", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO6S12 s", "Sv2aHO6S12 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO6S12L002-1.fastq.gz", "fastq", 672995667.0, 8911161.0, "E MTAB 11505:sv2aHO6S12L002", "0:75.52 1:0", "A:165990319;C:160039398;G:159722501;T:187108781;N:134668", 75, 0, null, null, 165990319, 160039398, 159722501, 187108781, 134668, "ERX8620332", "ERS10857220", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94837, null, 0.13029, null, 0.65744, null, 0.47959, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10425, "ERR9077188", "ERX8620332", "ERS10857220", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO6S12", "SAMEA13254177", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO6S12 s", "Sv2aHO6S12 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO6S12L003-1.fastq.gz", "fastq", 683276767.0, 9047147.0, "E MTAB 11505:sv2aHO6S12L003", "0:75.52 1:0", "A:168501690;C:162583852;G:162063190;T:190018001;N:110034", 75, 0, null, null, 168501690, 162583852, 162063190, 190018001, 110034, "ERX8620332", "ERS10857220", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94983, null, 0.13248, null, 0.6565, null, 0.47977, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10426, "ERR9077189", "ERX8620332", "ERS10857220", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO6S12", "SAMEA13254177", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO6S12 s", "Sv2aHO6S12 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO6S12L004-1.fastq.gz", "fastq", 686469910.0, 9089431.0, "E MTAB 11505:sv2aHO6S12L004", "0:75.52 1:0", "A:169287189;C:163276361;G:162844724;T:190954218;N:107418", 75, 0, null, null, 169287189, 163276361, 162844724, 190954218, 107418, "ERX8620332", "ERS10857220", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95061, null, 0.13029, null, 0.65389, null, 0.48044, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10427, "ERR9077182", "ERX8620331", "ERS10857219", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO4S10", "SAMEA13254176", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO4S10 s", "Sv2aHO4S10 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO4S10L001-1.fastq.gz", "fastq", 713858966.0, 9452474.0, "E MTAB 11505:sv2aHO4S10L001", "0:75.52 1:0", "A:177913695;C:169425317;G:167540012;T:198835532;N:144410", 75, 0, null, null, 177913695, 169425317, 167540012, 198835532, 144410, "ERX8620331", "ERS10857219", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94848, null, 0.12981, null, 0.6636, null, 0.47772, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10428, "ERR9077183", "ERX8620331", "ERS10857219", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO4S10", "SAMEA13254176", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO4S10 s", "Sv2aHO4S10 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO4S10L002-1.fastq.gz", "fastq", 717619593.0, 9502301.0, "E MTAB 11505:sv2aHO4S10L002", "0:75.52 1:0", "A:178830542;C:170284720;G:168594514;T:199773382;N:136435", 75, 0, null, null, 178830542, 170284720, 168594514, 199773382, 136435, "ERX8620331", "ERS10857219", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94812, null, 0.12868, null, 0.6645, null, 0.47281, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10429, "ERR9077184", "ERX8620331", "ERS10857219", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO4S10", "SAMEA13254176", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO4S10 s", "Sv2aHO4S10 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO4S10L003-1.fastq.gz", "fastq", 727263626.0, 9629858.0, "E MTAB 11505:sv2aHO4S10L003", "0:75.52 1:0", "A:181201278;C:172619520;G:170780953;T:202550397;N:111478", 75, 0, null, null, 181201278, 172619520, 170780953, 202550397, 111478, "ERX8620331", "ERS10857219", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94768, null, 0.12827, null, 0.66596, null, 0.47332, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10430, "ERR9077185", "ERX8620331", "ERS10857219", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO4S10", "SAMEA13254176", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO4S10 s", "Sv2aHO4S10 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO3S6", "SAMEA13254175", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO3S6 s", "Sv2aHO3S6 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO3S6L001-1.fastq.gz", "fastq", 710756305.0, 9410862.0, "E MTAB 11505:sv2aHO3S6L001", "0:75.53 1:0", "A:175585613;C:170261120;G:166658917;T:198106388;N:144267", 75, 0, null, null, 175585613, 170261120, 166658917, 198106388, 144267, "ERX8620330", "ERS10857218", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94827, null, 0.14002, null, 0.66785, null, 0.474, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10432, "ERR9077179", "ERX8620330", "ERS10857218", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO3S6", "SAMEA13254175", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO3S6 s", "Sv2aHO3S6 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO3S6L002-1.fastq.gz", "fastq", 715330324.0, 9471415.0, "E MTAB 11505:sv2aHO3S6L002", "0:75.53 1:0", "A:176679775;C:171311031;G:167903237;T:199299483;N:136798", 75, 0, null, null, 176679775, 171311031, 167903237, 199299483, 136798, "ERX8620330", "ERS10857218", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.9469, null, 0.13915, null, 0.67004, null, 0.47654, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10433, "ERR9077180", "ERX8620330", "ERS10857218", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO3S6", "SAMEA13254175", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO3S6 s", "Sv2aHO3S6 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO3S6L003-1.fastq.gz", "fastq", 722810562.0, 9570364.0, "E MTAB 11505:sv2aHO3S6L003", "0:75.53 1:0", "A:178442845;C:173192786;G:169595085;T:201465522;N:114324", 75, 0, null, null, 178442845, 173192786, 169595085, 201465522, 114324, "ERX8620330", "ERS10857218", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94918, null, 0.13979, null, 0.66902, null, 0.47572, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10434, "ERR9077181", "ERX8620330", "ERS10857218", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHO3S6", "SAMEA13254175", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHO3S6 s", "Sv2aHO3S6 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHO3S6L004-1.fastq.gz", "fastq", 732990507.0, 9705054.0, "E MTAB 11505:sv2aHO3S6L004", "0:75.53 1:0", "A:180951130;C:175567778;G:172037542;T:204323488;N:110569", 75, 0, null, null, 180951130, 175567778, 172037542, 204323488, 110569, "ERX8620330", "ERS10857218", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.94812, null, 0.13893, null, 0.67085, null, 0.47502, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10435, "ERR9077174", "ERX8620329", "ERS10857217", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET7S9", "SAMEA13254174", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET7S9 s", "Sv2aHET7S9 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  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Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET7S9", "SAMEA13254174", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET7S9 s", "Sv2aHET7S9 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET7S9L002-1.fastq.gz", "fastq", 773106152.0, 10236677.0, "E MTAB 11505:sv2aHET7S9L002", "0:75.52 1:0", "A:191812833;C:184676419;G:180997547;T:215473732;N:145621", 75, 0, null, null, 191812833, 184676419, 180997547, 215473732, 145621, "ERX8620329", "ERS10857217", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95016, null, 0.12464, null, 0.65482, null, 0.47419, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10437, "ERR9077176", "ERX8620329", "ERS10857217", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET7S9", "SAMEA13254174", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET7S9 s", "Sv2aHET7S9 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET7S9L003-1.fastq.gz", "fastq", 783061051.0, 10368445.0, "E MTAB 11505:sv2aHET7S9L003", "0:75.52 1:0", "A:194289152;C:187108364;G:183177036;T:218370500;N:115999", 75, 0, null, null, 194289152, 187108364, 183177036, 218370500, 115999, "ERX8620329", "ERS10857217", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95172, null, 0.12488, null, 0.65445, null, 0.48157, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10438, "ERR9077177", "ERX8620329", "ERS10857217", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET7S9", "SAMEA13254174", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET7S9 s", "Sv2aHET7S9 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET7S9L004-1.fastq.gz", "fastq", 790150025.0, 10462214.0, "E MTAB 11505:sv2aHET7S9L004", "0:75.52 1:0", "A:196056500;C:188746833;G:184927588;T:220305922;N:113182", 75, 0, null, null, 196056500, 188746833, 184927588, 220305922, 113182, "ERX8620329", "ERS10857217", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95285, null, 0.12478, null, 0.65551, null, 0.4763, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10439, "ERR9077170", "ERX8620328", "ERS10857216", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET4S5", "SAMEA13254173", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET4S5 s", "Sv2aHET4S5 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET4S5L001-1.fastq.gz", "fastq", 685650097.0, 9076481.0, "E MTAB 11505:sv2aHET4S5L001", "0:75.54 1:0", "A:161812875;C:167870520;G:166985310;T:188850530;N:130862", 75, 0, null, null, 161812875, 167870520, 166985310, 188850530, 130862, "ERX8620328", "ERS10857216", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95733, null, 0.09974, null, 0.65691, null, 0.47392, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10440, "ERR9077171", "ERX8620328", "ERS10857216", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET4S5", "SAMEA13254173", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET4S5 s", "Sv2aHET4S5 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET4S5L002-1.fastq.gz", "fastq", 684402241.0, 9059974.0, "E MTAB 11505:sv2aHET4S5L002", "0:75.54 1:0", "A:161493428;C:167520248;G:166882054;T:188383816;N:122695", 75, 0, null, null, 161493428, 167520248, 166882054, 188383816, 122695, "ERX8620328", "ERS10857216", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95537, null, 0.09915, null, 0.65719, null, 0.48261, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10441, "ERR9077172", "ERX8620328", "ERS10857216", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET4S5", "SAMEA13254173", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET4S5 s", "Sv2aHET4S5 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET4S5L003-1.fastq.gz", "fastq", 694099126.0, 9188245.0, "E MTAB 11505:sv2aHET4S5L003", "0:75.54 1:0", "A:163727378;C:169989210;G:169143224;T:191137588;N:101726", 75, 0, null, null, 163727378, 169989210, 169143224, 191137588, 101726, "ERX8620328", "ERS10857216", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95629, null, 0.09861, null, 0.65705, null, 0.47187, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10442, "ERR9077173", "ERX8620328", "ERS10857216", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET4S5", "SAMEA13254173", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET4S5 s", "Sv2aHET4S5 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET4S5L004-1.fastq.gz", "fastq", 698753836.0, 9249820.0, "E MTAB 11505:sv2aHET4S5L004", "0:75.54 1:0", "A:164809473;C:171057633;G:170349692;T:192441413;N:95625", 75, 0, null, null, 164809473, 171057633, 170349692, 192441413, 95625, "ERX8620328", "ERS10857216", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95613, null, 0.09885, null, 0.65798, null, 0.47227, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10443, "ERR9077166", "ERX8620327", "ERS10857215", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET3S4", "SAMEA13254172", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET3S4 s", "Sv2aHET3S4 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET3S4L001-1.fastq.gz", "fastq", 691298605.0, 9151512.0, "E MTAB 11505:sv2aHET3S4L001", "0:75.54 1:0", "A:164743919;C:170752099;G:164763621;T:190912044;N:126922", 75, 0, null, null, 164743919, 170752099, 164763621, 190912044, 126922, "ERX8620327", "ERS10857215", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95684, null, 0.09604, null, 0.6603, null, 0.47285, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10444, "ERR9077167", "ERX8620327", "ERS10857215", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET3S4", "SAMEA13254172", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET3S4 s", "Sv2aHET3S4 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET3S4L002-1.fastq.gz", "fastq", 694080975.0, 9188259.0, "E MTAB 11505:sv2aHET3S4L002", "0:75.54 1:0", "A:165336810;C:171397273;G:165632321;T:191591872;N:122699", 75, 0, null, null, 165336810, 171397273, 165632321, 191591872, 122699, "ERX8620327", "ERS10857215", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95612, null, 0.09694, null, 0.65993, null, 0.46918, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10445, "ERR9077168", "ERX8620327", "ERS10857215", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET3S4", "SAMEA13254172", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET3S4 s", "Sv2aHET3S4 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET3S4L003-1.fastq.gz", "fastq", 703689889.0, 9315387.0, "E MTAB 11505:sv2aHET3S4L003", "0:75.54 1:0", "A:167575230;C:173881977;G:167845574;T:194289403;N:97705", 75, 0, null, null, 167575230, 173881977, 167845574, 194289403, 97705, "ERX8620327", "ERS10857215", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.9577, null, 0.09608, null, 0.66042, null, 0.47022, null, 74, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10446, "ERR9077169", "ERX8620327", "ERS10857215", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET3S4", "SAMEA13254172", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET3S4 s", "Sv2aHET3S4 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET3S4L004-1.fastq.gz", "fastq", 712116538.0, 9426961.0, "E MTAB 11505:sv2aHET3S4L004", "0:75.54 1:0", "A:169598596;C:175885948;G:169866534;T:196669400;N:96060", 75, 0, null, null, 169598596, 175885948, 169866534, 196669400, 96060, "ERX8620327", "ERS10857215", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95734, null, 0.09716, null, 0.66054, null, 0.47257, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10447, "ERR9077162", "ERX8620326", "ERS10857214", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET2S3", "SAMEA13254171", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET2S3 s", "Sv2aHET2S3 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET2S3L001-1.fastq.gz", "fastq", 733440522.0, 9709422.0, "E MTAB 11505:sv2aHET2S3L001", "0:75.54 1:0", "A:173670000;C:181175353;G:175392793;T:203059256;N:143120", 75, 0, null, null, 173670000, 181175353, 175392793, 203059256, 143120, "ERX8620326", "ERS10857214", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95885, null, 0.08758, null, 0.65393, null, 0.47249, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10448, "ERR9077163", "ERX8620326", "ERS10857214", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET2S3", "SAMEA13254171", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET2S3 s", "Sv2aHET2S3 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET2S3L002-1.fastq.gz", "fastq", 732121929.0, 9691967.0, "E MTAB 11505:sv2aHET2S3L002", "0:75.54 1:0", "A:173332091;C:180805738;G:175271736;T:202574727;N:137637", 75, 0, null, null, 173332091, 180805738, 175271736, 202574727, 137637, "ERX8620326", "ERS10857214", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95775, null, 0.08879, null, 0.6564, null, 0.4718, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10449, "ERR9077164", "ERX8620326", "ERS10857214", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET2S3", "SAMEA13254171", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET2S3 s", "Sv2aHET2S3 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET2S3L003-1.fastq.gz", "fastq", 743488189.0, 9842286.0, "E MTAB 11505:sv2aHET2S3L003", "0:75.54 1:0", "A:175979238;C:183726319;G:177933958;T:205735955;N:112719", 75, 0, null, null, 175979238, 183726319, 177933958, 205735955, 112719, "ERX8620326", "ERS10857214", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.9593, null, 0.08716, null, 0.65437, null, 0.46976, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [10450, "ERR9077165", "ERX8620326", "ERS10857214", "ERP135966", "PRJEB51339", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E-MTAB-11505", "Transcriptome Analysis", "Transcriptome analysis of the heads of 6 dpf sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", null, "Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Sv2aHET2S3", "SAMEA13254171", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg", "ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven  Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB", null, null, null, null, null, null, null, null, "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "E MTAB 11505:Sv2aHET2S3 s", "Sv2aHET2S3 s", "RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas.  TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines.", "Experimental Factor: genotype:sv2a+/ ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "SINGLE", "ILLUMINA", "NextSeq 500", null, "ERP135966", "NextSeq 500 sequencing; RNA seq experiment of sv2a /   sv2a+/  and sv2a+/+ zebrafish larvae", "ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21", "sv2aHET2S3L004-1.fastq.gz", "fastq", 747723481.0, 9898304.0, "E MTAB 11505:sv2aHET2S3L004", "0:75.54 1:0", "A:176935451;C:184684782;G:179046040;T:206946124;N:111084", 75, 0, null, null, 176935451, 184684782, 179046040, 206946124, 111084, "ERX8620326", "ERS10857214", "ERA9644804", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive", 1, 0.95934, null, 0.08676, null, 0.65533, null, 0.47523, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-04-21", "Larval", "Larval", "Head", "Nervous System"], [11025, "ERR9787516", "ERX9334792", "ERS12088364", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 9", "SAMEA14460887", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460887|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:24Z|INSDC last update:2022 09 12T12:19:24Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 9|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 9|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 9 p", "Sample 9 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "TSCHOM1_1.fastq.gz TSCHOM1_2.fastq.gz", "fastq fastq", 6360351174.0, 31486887.0, "E MTAB 11776:TSCHOM1 ", "0:101 1:101", "A:1750731340;C:1410426576;G:1460021447;T:1739131898;N:39913", 101, 101, null, null, 1750731340, 1410426576, 1460021447, 1739131898, 39913, "ERX9334792", "ERS12088364", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93517, 0.92417, 0.15551, 0.15199, 0.67736, 0.6786, 0.48763, 0.48988, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11026, "ERR9787515", "ERX9334791", "ERS12088363", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 8", "SAMEA14460886", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460886|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:24Z|INSDC last update:2022 09 12T12:19:24Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 8|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 8|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 8 p", "Sample 8 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "DEPHOM4_1.fastq.gz DEPHOM4_2.fastq.gz", "fastq fastq", 6195443828.0, 30670514.0, "E MTAB 11776:DEPHOM4 ", "0:101 1:101", "A:1524344281;C:1573560980;G:1585093004;T:1512406843;N:38720", 101, 101, null, null, 1524344281, 1573560980, 1585093004, 1512406843, 38720, "ERX9334791", "ERS12088363", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.95088, 0.9542, 0.17631, 0.17203, 0.71121, 0.70981, 0.56015, 0.57999, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11027, "ERR9787514", "ERX9334790", "ERS12088362", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 7", "SAMEA14460885", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460885|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 7|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 7|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 7 p", "Sample 7 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "DEPHOM7_1.fastq.gz DEPHOM7_2.fastq.gz", "fastq fastq", 6201660378.0, 30701289.0, "E MTAB 11776:DEPHOM7 ", "0:101 1:101", "A:1699906420;C:1382805098;G:1427335171;T:1691574092;N:39597", 101, 101, null, null, 1699906420, 1382805098, 1427335171, 1691574092, 39597, "ERX9334790", "ERS12088362", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.92781, 0.92603, 0.15556, 0.15416, 0.67965, 0.67963, 0.48209, 0.48229, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11028, "ERR9787513", "ERX9334789", "ERS12088361", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 6", "SAMEA14460884", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460884|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 6|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 6|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 6 p", "Sample 6 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "DEPHOM6_1.fastq.gz DEPHOM6_2.fastq.gz", "fastq fastq", 6255857382.0, 30969591.0, "E MTAB 11776:DEPHOM6 ", "0:101 1:101", "A:1722554517;C:1398134491;G:1424183345;T:1710945949;N:39080", 101, 101, null, null, 1722554517, 1398134491, 1424183345, 1710945949, 39080, "ERX9334789", "ERS12088361", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93476, 0.93206, 0.16121, 0.1592, 0.67882, 0.67898, 0.48043, 0.47851, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11029, "ERR9787512", "ERX9334788", "ERS12088360", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 5", "SAMEA14460883", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460883|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 5|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 5|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 5 p", "Sample 5 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "DEPHOM1_1.fastq.gz DEPHOM1_2.fastq.gz", "fastq fastq", 6340417006.0, 31388203.0, "E MTAB 11776:DEPHOM1 ", "0:101 1:101", "A:1738622221;C:1420060351;G:1455477148;T:1726216833;N:40453", 101, 101, null, null, 1738622221, 1420060351, 1455477148, 1726216833, 40453, "ERX9334788", "ERS12088360", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93634, 0.93167, 0.15036, 0.14813, 0.67809, 0.67813, 0.47978, 0.47851, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11030, "ERR9787511", "ERX9334787", "ERS12088359", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 4", "SAMEA14460882", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460882|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 4|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 /  x tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 4|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 4 p", "Sample 4 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 /  x tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "2XHOM7_1.fastq.gz 2XHOM7_2.fastq.gz", "fastq fastq", 6291880446.0, 31147923.0, "E MTAB 11776:2XHOM7 ", "0:101 1:101", "A:1712784902;C:1424143534;G:1452943449;T:1701969086;N:39475", 101, 101, null, null, 1712784902, 1424143534, 1452943449, 1701969086, 39475, "ERX9334787", "ERS12088359", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93869, 0.93511, 0.15405, 0.15042, 0.67377, 0.67351, 0.50599, 0.50683, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11031, "ERR9787510", "ERX9334786", "ERS12088358", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 3", "SAMEA14460881", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460881|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 3|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 /  x tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 3|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 3 p", "Sample 3 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 /  x tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "2XHOM6_1.fastq.gz 2XHOM6_2.fastq.gz", "fastq fastq", 6214327596.0, 30763998.0, "E MTAB 11776:2XHOM6 ", "0:101 1:101", "A:1705019759;C:1384064144;G:1432455427;T:1692749964;N:38302", 101, 101, null, null, 1705019759, 1384064144, 1432455427, 1692749964, 38302, "ERX9334786", "ERS12088358", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93591, 0.92636, 0.14492, 0.14145, 0.67489, 0.67491, 0.47753, 0.49286, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11032, "ERR9787509", "ERX9334785", "ERS12088357", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 2", "SAMEA14460880", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460880|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 2|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 /  x tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 2|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 2 p", "Sample 2 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 /  x tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "2XHOM4_1.fastq.gz 2XHOM4_2.fastq.gz", "fastq fastq", 6301691990.0, 31196495.0, "E MTAB 11776:2XHOM4 ", "0:101 1:101", "A:1698118705;C:1442276237;G:1473988715;T:1687268823;N:39510", 101, 101, null, null, 1698118705, 1442276237, 1473988715, 1687268823, 39510, "ERX9334785", "ERS12088357", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.94255, 0.93839, 0.13232, 0.13007, 0.67326, 0.67294, 0.49084, 0.49291, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11033, "ERR9787508", "ERX9334784", "ERS12088356", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 16", "SAMEA14460879", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460879|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 16|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:wild type genotype|individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 16|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 16 p", "Sample 16 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "WT7_1.fastq.gz WT7_2.fastq.gz", "fastq fastq", 6206666746.0, 30726073.0, "E MTAB 11776:WT7 ", "0:101 1:101", "A:1705689174;C:1387290312;G:1420249657;T:1693397929;N:39674", 101, 101, null, null, 1705689174, 1387290312, 1420249657, 1693397929, 39674, "ERX9334784", "ERS12088356", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93493, 0.92964, 0.15803, 0.1554, 0.67405, 0.67501, 0.47988, 0.46768, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11034, "ERR9787507", "ERX9334783", "ERS12088355", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 15", "SAMEA14460878", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460878|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 15|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:wild type genotype|individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 15|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 15 p", "Sample 15 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "WT6_1.fastq.gz WT6_2.fastq.gz", "fastq fastq", 6360740630.0, 31488815.0, "E MTAB 11776:WT6 ", "0:101 1:101", "A:1735195643;C:1436805269;G:1469558083;T:1719141699;N:39936", 101, 101, null, null, 1735195643, 1436805269, 1469558083, 1719141699, 39936, "ERX9334783", "ERS12088355", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93629, 0.93343, 0.15169, 0.1501, 0.67572, 0.67517, 0.47499, 0.47879, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11035, "ERR9787506", "ERX9334782", "ERS12088354", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 14", "SAMEA14460877", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460877|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 14|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:wild type genotype|individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 14|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 14 p", "Sample 14 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "WT4_1.fastq.gz WT4_2.fastq.gz", "fastq fastq", 6227472342.0, 30829071.0, "E MTAB 11776:WT4 ", "0:101 1:101", "A:1668352581;C:1434152947;G:1468645621;T:1656281986;N:39207", 101, 101, null, null, 1668352581, 1434152947, 1468645621, 1656281986, 39207, "ERX9334782", "ERS12088354", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.94261, 0.93675, 0.15334, 0.15049, 0.67927, 0.67872, 0.48762, 0.49138, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11036, "ERR9787505", "ERX9334781", "ERS12088353", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 13", "SAMEA14460876", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460876|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 13|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:wild type genotype|individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 13|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 13 p", "Sample 13 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "WT1_1.fastq.gz WT1_2.fastq.gz", "fastq fastq", 6332757570.0, 31350285.0, "E MTAB 11776:WT1 ", "0:101 1:101", "A:1726838066;C:1431452165;G:1460746594;T:1713681043;N:39702", 101, 101, null, null, 1726838066, 1431452165, 1460746594, 1713681043, 39702, "ERX9334781", "ERS12088353", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.92422, 0.93556, 0.14884, 0.14926, 0.67694, 0.67564, 0.48223, 0.48884, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11037, "ERR9787504", "ERX9334780", "ERS12088352", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 12", "SAMEA14460875", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460875|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 12|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 12|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 12 p", "Sample 12 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "TSCHOM7_1.fastq.gz TSCHOM7_2.fastq.gz", "fastq fastq", 6216990360.0, 30777180.0, "E MTAB 11776:TSCHOM7 ", "0:101 1:101", "A:1710256020;C:1390027205;G:1419250792;T:1697417099;N:39244", 101, 101, null, null, 1710256020, 1390027205, 1419250792, 1697417099, 39244, "ERX9334780", "ERS12088352", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93162, 0.92801, 0.15191, 0.14943, 0.67789, 0.67951, 0.47915, 0.47762, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11038, "ERR9787503", "ERX9334779", "ERS12088351", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 11", "SAMEA14460874", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460874|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 11|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 11|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 11 p", "Sample 11 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "TSCHOM6_1.fastq.gz TSCHOM6_2.fastq.gz", "fastq fastq", 6199081848.0, 30688524.0, "E MTAB 11776:TSCHOM6 ", "0:101 1:101", "A:1705859045;C:1387530558;G:1415224718;T:1690428701;N:38826", 101, 101, null, null, 1705859045, 1387530558, 1415224718, 1690428701, 38826, "ERX9334779", "ERS12088351", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93583, 0.93349, 0.15923, 0.15664, 0.67976, 0.67986, 0.48632, 0.48376, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11039, "ERR9787502", "ERX9334778", "ERS12088350", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 10", "SAMEA14460873", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460873|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 10|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 10|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 10 p", "Sample 10 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "TSCHOM4_1.fastq.gz TSCHOM4_2.fastq.gz", "fastq fastq", 6287836204.0, 31127902.0, "E MTAB 11776:TSCHOM4 ", "0:101 1:101", "A:1673762523;C:1453880149;G:1493343671;T:1666809849;N:40012", 101, 101, null, null, 1673762523, 1453880149, 1493343671, 1666809849, 40012, "ERX9334778", "ERS12088350", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.94269, 0.9375, 0.14166, 0.13979, 0.67476, 0.67722, 0.4927, 0.49365, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11040, "ERR9787501", "ERX9334777", "ERS12088349", "ERP137937", "PRJEB53153", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E-MTAB-11776", "Transcriptome Analysis", "Transcriptome analysis of the heads of 5 dpf epdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a /  zebrafish larvae.", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", null, "Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Sample 1", "SAMEA14460872", "Laboratory for Molecular Biodiscovery, KU Leuven", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12|External Id:SAMEA14460872|INSDC center alias:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC center name:Laboratory for Molecular Biodiscovery  KU Leuven|INSDC first public:2022 09 12T12:19:23Z|INSDC last update:2022 09 12T12:19:23Z|INSDC status:public|Submitter Id:E MTAB 11776:Sample 1|age:5|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:depdc5 /  x tsc2 / |individual:pool of 10 larvae|isolate:not applicable|organism part:head|sample name:E MTAB 11776:Sample 1|scientific name:Danio rerio|sex:non available|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "E MTAB 11776:Sample 1 p", "Sample 1 p", "RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent Invitrogen  followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes  the RNA pellet was air dried  dissolved in nuclease free water Fermentas. Illumina TruSeq Stranded mRNA Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.", "Experimental Factor: genotype:depdc5 /  x tsc2 / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP137937", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of depdc5 /   tsc2 /   depdc5 /  x tsc2 /  and wildtype zebrafish larvae", "ENA FIRST PUBLIC:2022 09 12|ENA LAST UPDATE:2022 09 12", "2XHOM1_1.fastq.gz 2XHOM1_2.fastq.gz", "fastq fastq", 6232605768.0, 30854484.0, "E MTAB 11776:2XHOM1 ", "0:101 1:101", "A:1725401812;C:1384507160;G:1410306583;T:1712351429;N:38784", 101, 101, null, null, 1725401812, 1384507160, 1410306583, 1712351429, 38784, "ERX9334777", "ERS12088349", "ERA14756702", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", "Laboratory for Molecular Biodiscovery, KU Leuven|European Nucleotide Archive", 2, 0.93594, 0.93262, 0.15282, 0.14977, 0.67503, 0.67373, 0.49522, 0.49759, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Belgium", "2022-09-12", "Larval", "Larval", "Head", "Nervous System"], [11711, "ERR11282347", "ERX10689990", "ERS15395535", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 8", "SAMEA113400389", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400389|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 8|age:2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:wild type genotype|organism part:brain|sample name:E MTAB 12901:Sample 8|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 8 p", "Sample 8 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0008_S1_L005_R2_001.fastq.gz 8680-JP-0008_S1_L005_R1_001.fastq.gz", "fastq fastq", 21919844332.0, 72582266.0, "E MTAB 12901:8680 JP 0008 S1 L005 R", "0:151 1:151", "A:5996325335;C:4770833694;G:5244802952;T:5876120950;N:31761401", 151, 151, null, null, 5996325335, 4770833694, 5244802952, 5876120950, 31761401, "ERX10689990", "ERS15395535", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92572, 0.92425, 0.13427, 0.13101, 0.70086, 0.70266, 0.50868, 0.50381, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11712, "ERR11282346", "ERX10689989", "ERS15395534", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 7", "SAMEA113400388", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400388|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 7|age:2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:wild type genotype|organism part:brain|sample name:E MTAB 12901:Sample 7|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 7 p", "Sample 7 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0007_S1_L005_R2_001.fastq.gz 8680-JP-0007_S1_L005_R1_001.fastq.gz", "fastq fastq", 20351465316.0, 67388958.0, "E MTAB 12901:8680 JP 0007 S1 L005 R", "0:151 1:151", "A:5563989836;C:4461170993;G:4892290448;T:5404916249;N:29097790", 151, 151, null, null, 5563989836, 4461170993, 4892290448, 5404916249, 29097790, "ERX10689989", "ERS15395534", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.9267, 0.9236, 0.12782, 0.12528, 0.70307, 0.70473, 0.50799, 0.50969, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11713, "ERR11282345", "ERX10689988", "ERS15395533", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 6", "SAMEA113400387", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400387|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 6|age:2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:wild type genotype|organism part:brain|sample name:E MTAB 12901:Sample 6|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 6 p", "Sample 6 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0006_S1_L005_R2_001.fastq.gz 8680-JP-0006_S1_L005_R1_001.fastq.gz", "fastq fastq", 19220102648.0, 63642724.0, "E MTAB 12901:8680 JP 0006 S1 L005 R", "0:151 1:151", "A:5250476003;C:4214339559;G:4606611173;T:5120701154;N:27974759", 151, 151, null, null, 5250476003, 4214339559, 4606611173, 5120701154, 27974759, "ERX10689988", "ERS15395533", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92441, 0.92391, 0.13718, 0.13346, 0.70281, 0.7024, 0.48155, 0.49173, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11714, "ERR11282344", "ERX10689987", "ERS15395532", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 3", "SAMEA113400386", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400386|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 3|age:30|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:wild type genotype|organism part:brain|sample name:E MTAB 12901:Sample 3|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 3 p", "Sample 3 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0003_S1_L005_R1_001.fastq.gz 8680-JP-0003_S1_L005_R2_001.fastq.gz", "fastq fastq", 18624364462.0, 61670081.0, "E MTAB 12901:8680 JP 0003 S1 L005 R", "0:151 1:151", "A:5114421711;C:4075705896;G:4436341056;T:4970953410;N:26942389", 151, 151, null, null, 5114421711, 4075705896, 4436341056, 4970953410, 26942389, "ERX10689987", "ERS15395532", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92553, 0.92378, 0.13069, 0.12709, 0.69988, 0.70258, 0.4969, 0.51157, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11715, "ERR11282343", "ERX10689986", "ERS15395531", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 2", "SAMEA113400385", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400385|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 2|age:30|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:wild type genotype|organism part:brain|sample name:E MTAB 12901:Sample 2|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 2 p", "Sample 2 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0002_S1_L005_R1_001.fastq.gz 8680-JP-0002_S1_L005_R2_001.fastq.gz", "fastq fastq", 15153807038.0, 50178169.0, "E MTAB 12901:8680 JP 0002 S1 L005 R", "0:151 1:151", "A:4156183785;C:3309476575;G:3635942314;T:4030261947;N:21942417", 151, 151, null, null, 4156183785, 3309476575, 3635942314, 4030261947, 21942417, "ERX10689986", "ERS15395531", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92069, 0.91964, 0.13733, 0.13466, 0.70102, 0.70185, 0.48507, 0.48992, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11716, "ERR11282342", "ERX10689985", "ERS15395530", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 1", "SAMEA113400384", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400384|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 1|age:30|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:wild type genotype|organism part:brain|sample name:E MTAB 12901:Sample 1|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 1 p", "Sample 1 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:wild type genotype", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0001_S1_L005_R2_001.fastq.gz 8680-JP-0001_S1_L005_R1_001.fastq.gz", "fastq fastq", 17758550696.0, 58803148.0, "E MTAB 12901:8680 JP 0001 S1 L005 R", "0:151 1:151", "A:4866917250;C:3906782394;G:4241519777;T:4717566830;N:25764445", 151, 151, null, null, 4866917250, 3906782394, 4241519777, 4717566830, 25764445, "ERX10689985", "ERS15395530", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92263, 0.92154, 0.13341, 0.12969, 0.69443, 0.69658, 0.48648, 0.49678, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11717, "ERR11282341", "ERX10689984", "ERS15395529", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 9", "SAMEA113400383", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400383|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 9|age:2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:abcb4  / |organism part:brain|sample name:E MTAB 12901:Sample 9|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 9 p", "Sample 9 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:abcb4  / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0009_S1_L005_R2_001.fastq.gz 8680-JP-0009_S1_L005_R1_001.fastq.gz", "fastq fastq", 21619735456.0, 71588528.0, "E MTAB 12901:8680 JP 0009 S1 L005 R", "0:151 1:151", "A:5904040180;C:4720941204;G:5229712921;T:5733559571;N:31481580", 151, 151, null, null, 5904040180, 4720941204, 5229712921, 5733559571, 31481580, "ERX10689984", "ERS15395529", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92235, 0.92126, 0.13956, 0.13682, 0.70378, 0.70526, 0.4929, 0.49286, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11718, "ERR11282340", "ERX10689983", "ERS15395528", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 11", "SAMEA113400382", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400382|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 11|age:2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:abcb4  / |organism part:brain|sample name:E MTAB 12901:Sample 11|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 11 p", "Sample 11 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:abcb4  / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0011_S1_L005_R1_001.fastq.gz 8680-JP-0011_S1_L005_R2_001.fastq.gz", "fastq fastq", 20372991574.0, 67460237.0, "E MTAB 12901:8680 JP 0011 S1 L005 R", "0:151 1:151", "A:5569250549;C:4448986210;G:4925237941;T:5399892024;N:29624850", 151, 151, null, null, 5569250549, 4448986210, 4925237941, 5399892024, 29624850, "ERX10689983", "ERS15395528", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92578, 0.92449, 0.12979, 0.12632, 0.69666, 0.69775, 0.51379, 0.51557, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11719, "ERR11282339", "ERX10689982", "ERS15395527", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 10", "SAMEA113400381", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400381|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 10|age:2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:abcb4  / |organism part:brain|sample name:E MTAB 12901:Sample 10|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 10 p", "Sample 10 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:abcb4  / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0010_S1_L005_R1_001.fastq.gz 8680-JP-0010_S1_L005_R2_001.fastq.gz", "fastq fastq", 21517298566.0, 71249333.0, "E MTAB 12901:8680 JP 0010 S1 L005 R", "0:151 1:151", "A:5890133399;C:4693794003;G:5193013881;T:5709021540;N:31335743", 151, 151, null, null, 5890133399, 4693794003, 5193013881, 5709021540, 31335743, "ERX10689982", "ERS15395527", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92431, 0.92248, 0.13476, 0.13116, 0.70203, 0.70283, 0.50087, 0.50123, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11720, "ERR11282338", "ERX10689981", "ERS15395526", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 5", "SAMEA113400380", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400380|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 5|age:30|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:abcb4  / |organism part:brain|sample name:E MTAB 12901:Sample 5|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 5 p", "Sample 5 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:abcb4  / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0005_S1_L005_R1_001.fastq.gz 8680-JP-0005_S1_L005_R2_001.fastq.gz", "fastq fastq", 25670665306.0, 85002203.0, "E MTAB 12901:8680 JP 0005 S1 L005 R", "0:151 1:151", "A:7004508034;C:5563021332;G:6252648683;T:6813680645;N:36806612", 151, 151, null, null, 7004508034, 5563021332, 6252648683, 6813680645, 36806612, "ERX10689981", "ERS15395526", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92268, 0.92095, 0.13119, 0.12796, 0.70234, 0.70276, 0.51658, 0.51519, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11721, "ERR11282337", "ERX10689980", "ERS15395525", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 4", "SAMEA113400379", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400379|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 4|age:30|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:abcb4  / |organism part:brain|sample name:E MTAB 12901:Sample 4|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 4 p", "Sample 4 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:abcb4  / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0004_S1_L005_R1_001.fastq.gz 8680-JP-0004_S1_L005_R2_001.fastq.gz", "fastq fastq", 19678467074.0, 65160487.0, "E MTAB 12901:8680 JP 0004 S1 L005 R", "0:151 1:151", "A:5388172969;C:4290008191;G:4741082570;T:5230699181;N:28504163", 151, 151, null, null, 5388172969, 4290008191, 4741082570, 5230699181, 28504163, "ERX10689980", "ERS15395525", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92019, 0.91807, 0.13779, 0.13325, 0.69739, 0.69682, 0.48956, 0.48353, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11722, "ERR11282336", "ERX10689979", "ERS15395524", "ERP146895", "PRJEB61813", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E-MTAB-12901", "Other", "The ATP binding cassette subfamily B member 1 ABCB1  encoding a multidrug transporter P glycoprotein  plays a critical role in the efflux of xenobiotics in humans and is implicated in cancer resistance to chemotherapy\u2014however  little information regarding Pgp at the zebrafish. In addition  to study the function of Pgp in the zebrafish brain in the aging process  we performed RNA seq using brain tissue of WT and abcb4 knockout zebrafish at different ages  such as 2 month and 30 month.", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", null, "Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Sample 12", "SAMEA113400378", "VANDERBILT UNIVERSITY", "ENA FIRST PUBLIC:2023 07 14T00:23:41Z|ENA LAST UPDATE:2023 07 14T00:23:41Z|External Id:SAMEA113400378|INSDC center alias:VANDERBILT UNIVERSITY|INSDC center name:VANDERBILT UNIVERSITY|INSDC first public:2023 07 14T00:23:41Z|INSDC last update:2023 07 14T00:23:41Z|INSDC status:public|Submitter Id:E MTAB 12901:Sample 12|age:30|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|disease:normal|genotype:abcb4  / |organism part:brain|sample name:E MTAB 12901:Sample 12|scientific name:Danio rerio|sex:female|strain:AB", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "E MTAB 12901:Sample 12 p", "Sample 12 p", "RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit Illumina to prepare cDNA libraries post PolyA selection", "Experimental Factor: genotype:abcb4  / ", "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP146895", "Illumina NovaSeq 6000 paired end sequencing; RNA seq of brain tissues of WT and abcb4 knockout zebrafish at 2 month and 30 month", "ENA FIRST PUBLIC:2023 07 14|ENA LAST UPDATE:2023 07 14", "8680-JP-0012_S1_L005_R1_001.fastq.gz 8680-JP-0012_S1_L005_R2_001.fastq.gz", "fastq fastq", 19025354324.0, 62997862.0, "E MTAB 12901:8680 JP 0012 S1 L005 R", "0:151 1:151", "A:5203524540;C:4195830684;G:4551047863;T:5047420365;N:27530872", 151, 151, null, null, 5203524540, 4195830684, 4551047863, 5047420365, 27530872, "ERX10689979", "ERS15395524", "ERA23235100", "VANDERBILT UNIVERSITY|European Nucleotide Archive", "VANDERBILT UNIVERSITY|European Nucleotide Archive", 2, 0.92091, 0.92095, 0.13145, 0.12737, 0.69238, 0.69258, 0.50372, 0.48431, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2023-07-14", "Adult", "Adult", "Brain", "Nervous System"], [11813, "ERR11788863", "ERX11187331", "ERS16221143", "ERP149944", "PRJEB64780", "A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "E-MTAB-13223", "Transcriptome Analysis", "To understand the cellular basis of the immune compartment of the zebrafish brain we have established reliable protocols for dissociation and prospective isolation of brain leukocytes  using fluorescent transgenic lines. By combining this approach with single cell RNA sequencing  we have generated a gene expression atlas composed of the distinct immune cells present in the homeostatic brain. These analyses revealed the presence of subpopulations of mononuclear phagocytes and other leukocytes  including cell types that have not been  or have been poorly  characterized so far. Here  we present the characterization of a new mononuclear phagocyte population that represents an important fraction among all brain leukocytes.  Adult brain single cell suspensions were prepared from adult Tgp2ry12:GFP; cd45:DsRed fish n=3 and a total of 14 000 cd45:DsRed+ cells were processed for single cell profiling using the 10x Genomics platform.", "ENA FIRST PUBLIC:2023 12 25|ENA LAST UPDATE:2023 12 25", null, "Protocols: FACS sorting of cd45:Dsred cells. Brains from adult Tgp2ry12:GFP; cd45:DsRed fish n=3  were dissected in 0.9X Dulbecco\u2032s Phosphate Buffered Saline DPBS were triturated and treated with Liberase TM at 33\u00b0C for 30 45 minutes  fully dissociated using a syringe with a 26G needle and washed in 2% fetal bovine serum diluted in 0.9X DPBS. Cell suspensions were centrifuged at 290g 4\u00baC 10 min and filtered through a 40\u00b5m nylon mesh. Just before flow cytometry analysis  using calcein violet to exclude dead cells 1\u00b5M  Thermo Fisher. Flow cytometry acquisition and cell sorting was performed on a FACS ARIA II Becton Dickinson. RNA Illumina", "Sample 1", "SAMEA114235870", "Universite Libre de Bruxelles", "ENA FIRST PUBLIC:2023 12 25T01:15:29Z|ENA LAST UPDATE:2023 12 25T01:15:29Z|External Id:SAMEA114235870|INSDC center name:Universite Libre de Bruxelles|INSDC first public:2023 12 25T01:15:29Z|INSDC last update:2023 12 25T01:15:29Z|INSDC status:public|Submitter Id:E MTAB 13223:Sample 1|age:5|broker name:ArrayExpress|cell type:leukocyte|collection date:not collected|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|geographic location country and/or sea:not collected|individual:pool of 3 fish|isolate:not applicable|organism part:brain|sample name:E MTAB 13223:Sample 1|scientific name:Danio rerio|sex:male and female|strain:AB", null, null, null, null, null, null, null, null, "A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "E MTAB 13223:Sample 1 p", "Sample 1 p", "A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "FACS sorting of cd45:Dsred cells. Brains from adult Tgp2ry12:GFP; cd45:DsRed fish n=3  were dissected in 0.9X Dulbecco\u2032s Phosphate Buffered Saline DPBS were triturated and treated with Liberase TM at 33\u00b0C for 30 45 minutes  fully dissociated using a syringe with a 26G needle and washed in 2% fetal bovine serum diluted in 0.9X DPBS. Cell suspensions were centrifuged at 290g 4\u00baC 10 min and filtered through a 40\u00b5m nylon mesh. Just before flow cytometry analysis  using calcein violet to exclude dead cells 1\u00b5M  Thermo Fisher. Flow cytometry acquisition and cell sorting was performed on a FACS ARIA II Becton Dickinson.  RNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "PolyA", "PAIRED", "ILLUMINA", "NextSeq 550", null, "ERP149944", "NextSeq 550 paired end sequencing; A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "ENA FIRST PUBLIC:2023 12 25|ENA LAST UPDATE:2023 12 25", "L41805_Track-81843_R1.fastq.gz L41805_Track-81843_R2.fastq.gz", "fastq fastq", 5545444464.0, 66017196.0, "E MTAB 13223:L41805 Track 81843", "0:28 1:56", "A:1576174024;C:1193175858;G:1221776615;T:1551009004;N:3308963", 28, 56, null, null, 1576174024, 1193175858, 1221776615, 1551009004, 3308963, "ERX11187331", "ERS16221143", "ERA26318932", "European Bioinformatics Institute|European Nucleotide Archive", "European Bioinformatics Institute|European Nucleotide Archive", 2, 0.00738, 0.90151, 0.00285, 0.20553, 0.99072, 0.82402, 0.4645, 0.53817, 28, 56, "T", "B", "sc-like readlen", "illumina", "nextseq", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "United Kingdom", "2023-12-25", "Adult", "Adult", "Brain", "Nervous System"], [11814, "ERR11788864", "ERX11187331", "ERS16221143", "ERP149944", "PRJEB64780", "A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "E-MTAB-13223", "Transcriptome Analysis", "To understand the cellular basis of the immune compartment of the zebrafish brain we have established reliable protocols for dissociation and prospective isolation of brain leukocytes  using fluorescent transgenic lines. By combining this approach with single cell RNA sequencing  we have generated a gene expression atlas composed of the distinct immune cells present in the homeostatic brain. These analyses revealed the presence of subpopulations of mononuclear phagocytes and other leukocytes  including cell types that have not been  or have been poorly  characterized so far. Here  we present the characterization of a new mononuclear phagocyte population that represents an important fraction among all brain leukocytes.  Adult brain single cell suspensions were prepared from adult Tgp2ry12:GFP; cd45:DsRed fish n=3 and a total of 14 000 cd45:DsRed+ cells were processed for single cell profiling using the 10x Genomics platform.", "ENA FIRST PUBLIC:2023 12 25|ENA LAST UPDATE:2023 12 25", null, "Protocols: FACS sorting of cd45:Dsred cells. Brains from adult Tgp2ry12:GFP; cd45:DsRed fish n=3  were dissected in 0.9X Dulbecco\u2032s Phosphate Buffered Saline DPBS were triturated and treated with Liberase TM at 33\u00b0C for 30 45 minutes  fully dissociated using a syringe with a 26G needle and washed in 2% fetal bovine serum diluted in 0.9X DPBS. Cell suspensions were centrifuged at 290g 4\u00baC 10 min and filtered through a 40\u00b5m nylon mesh. Just before flow cytometry analysis  using calcein violet to exclude dead cells 1\u00b5M  Thermo Fisher. Flow cytometry acquisition and cell sorting was performed on a FACS ARIA II Becton Dickinson. RNA Illumina", "Sample 1", "SAMEA114235870", "Universite Libre de Bruxelles", "ENA FIRST PUBLIC:2023 12 25T01:15:29Z|ENA LAST UPDATE:2023 12 25T01:15:29Z|External Id:SAMEA114235870|INSDC center name:Universite Libre de Bruxelles|INSDC first public:2023 12 25T01:15:29Z|INSDC last update:2023 12 25T01:15:29Z|INSDC status:public|Submitter Id:E MTAB 13223:Sample 1|age:5|broker name:ArrayExpress|cell type:leukocyte|collection date:not collected|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|geographic location country and/or sea:not collected|individual:pool of 3 fish|isolate:not applicable|organism part:brain|sample name:E MTAB 13223:Sample 1|scientific name:Danio rerio|sex:male and female|strain:AB", null, null, null, null, null, null, null, null, "A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "E MTAB 13223:Sample 1 p", "Sample 1 p", "A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "FACS sorting of cd45:Dsred cells. Brains from adult Tgp2ry12:GFP; cd45:DsRed fish n=3  were dissected in 0.9X Dulbecco\u2032s Phosphate Buffered Saline DPBS were triturated and treated with Liberase TM at 33\u00b0C for 30 45 minutes  fully dissociated using a syringe with a 26G needle and washed in 2% fetal bovine serum diluted in 0.9X DPBS. Cell suspensions were centrifuged at 290g 4\u00baC 10 min and filtered through a 40\u00b5m nylon mesh. Just before flow cytometry analysis  using calcein violet to exclude dead cells 1\u00b5M  Thermo Fisher. Flow cytometry acquisition and cell sorting was performed on a FACS ARIA II Becton Dickinson.  RNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "PolyA", "PAIRED", "ILLUMINA", "NextSeq 550", null, "ERP149944", "NextSeq 550 paired end sequencing; A single cell transcriptomic atlas reveals a new myeloid parenchymal population in the zebrafish brain", "ENA FIRST PUBLIC:2023 12 25|ENA LAST UPDATE:2023 12 25", "L41805_Track-81377_R1.fastq.gz L41805_Track-81377_R2.fastq.gz", "fastq fastq", 3184137096.0, 37906394.0, "E MTAB 13223:L41805 Track 81377", "0:28 1:56", "A:899943184;C:685571078;G:703849582;T:889228559;N:5544693", 28, 56, null, null, 899943184, 685571078, 703849582, 889228559, 5544693, "ERX11187331", "ERS16221143", "ERA26318932", "European Bioinformatics Institute|European Nucleotide Archive", "European Bioinformatics Institute|European Nucleotide Archive", 2, 0.00734, 0.90077, 0.00293, 0.20318, 0.99064, 0.82765, 0.47994, 0.53473, 28, 56, "T", "B", "sc-like readlen", "illumina", "nextseq", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "United Kingdom", "2023-12-25", "Adult", "Adult", "Brain", "Nervous System"], [31902, "SRR28763293", "SRX24328715", "SRS21090019", "SRP503258", "PRJNA1102381", "Acidification alters anxiety like behaviour and brain gene expression in zebrafish", "PRJNA1102381", "Other", "CO2 driven acidification of freshwater ecosystems is an accelerating process that can impact aquatic life in the future. Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. Our study pinpoints the molecular response to elevated CO2 possibly triggering behavioural changes in zebrafish and suggest that not only marine  but also freshwater fishes will be behaviourally affected by acidification due to rapid climate change.", null, null, null, null, "EB19", null, "replicate name:10|breed:AB|age:4 months|dev stage:adult|collection date:2021 11 14|geo loc name:Hong Kong|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of 4mpf Danio rerio brain", "EB19", "EB19", "Total RNA was extracted using the RNeasy Micro Kit Qiagen.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP503258", null, null, "EB19_1.fastq.gz EB19_2.fastq.gz", "fastq fastq", 9436386526.0, 31246313.0, "EB19 1.fastq.gz", "0:151 1:151", "A:2716315062;C:1976294752;G:2147671436;T:2595980360;N:124916", 151, 151, null, null, 2716315062, 1976294752, 2147671436, 2595980360, 124916, "SRX24328715", "SRS21090019", "SRA1849282", "The University of Hong Kong|School of Biological Sciences", "The University of Hong Kong", 2, 0.91409, 0.91345, 0.24896, 0.24788, 0.78056, 0.78279, 0.72332, 0.73168, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-04-22", "Adult", "Adult", "Brain", "Nervous System"], [31903, "SRR28763294", "SRX24328714", "SRS21090018", "SRP503258", "PRJNA1102381", "Acidification alters anxiety like behaviour and brain gene expression in zebrafish", "PRJNA1102381", "Other", "CO2 driven acidification of freshwater ecosystems is an accelerating process that can impact aquatic life in the future. Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. Our study pinpoints the molecular response to elevated CO2 possibly triggering behavioural changes in zebrafish and suggest that not only marine  but also freshwater fishes will be behaviourally affected by acidification due to rapid climate change.", null, null, null, null, "EB18", null, "replicate name:9|breed:AB|age:4 months|dev stage:adult|collection date:2021 11 08|geo loc name:Hong Kong|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of 4mpf Danio rerio brain", "EB18", "EB18", "Total RNA was extracted using the RNeasy Micro Kit Qiagen.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP503258", null, null, "EB18_1.fastq.gz EB18_2.fastq.gz", "fastq fastq", 9118420390.0, 30193445.0, "EB18 1.fastq.gz", "0:151 1:151", "A:2629035452;C:1916588061;G:2003273132;T:2569401842;N:121903", 151, 151, null, null, 2629035452, 1916588061, 2003273132, 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