{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"PolyA\", technology = \"unknown\" and tissue_curation = \"Gill\"", "rows": [[31909, "SRR28763300", "SRX24328708", "SRS21090012", "SRP503258", "PRJNA1102381", "Acidification alters anxiety like behaviour and brain gene expression in zebrafish", "PRJNA1102381", "Other", "CO2 driven acidification of freshwater ecosystems is an accelerating process that can impact aquatic life in the future. Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. 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Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. Our study pinpoints the molecular response to elevated CO2 possibly triggering behavioural changes in zebrafish and suggest that not only marine  but also freshwater fishes will be behaviourally affected by acidification due to rapid climate change.", null, null, null, null, "EG7", null, "replicate name:3|breed:AB|age:4 months|dev stage:adult|collection date:2021 11 02|geo loc name:Hong Kong|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of 4mpf Danio rerio gill", "EG7", "EG7", "Total RNA was extracted using the RNeasy Micro Kit Qiagen.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP503258", null, null, "EG7_1.fastq.gz EG7_2.fastq.gz", "fastq fastq", 10125638408.0, 33528604.0, "EG7 1.fastq.gz", "0:151 1:151", "A:2685408022;C:2334564091;G:2564122607;T:2541408208;N:135480", 151, 151, null, null, 2685408022, 2334564091, 2564122607, 2541408208, 135480, "SRX24328698", "SRS21090002", "SRA1849282", "The University of Hong Kong|School of Biological Sciences", "The University of Hong Kong", 2, 0.96855, 0.96773, 0.05197, 0.05213, 0.9124, 0.91449, 0.90093, 0.90061, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-04-22", "Adult", "Adult", "Gill", "Respiratory System"], [31920, "SRR28763311", "SRX24328697", "SRS21090001", "SRP503258", "PRJNA1102381", "Acidification alters anxiety like behaviour and brain gene expression in zebrafish", "PRJNA1102381", "Other", "CO2 driven acidification of freshwater ecosystems is an accelerating process that can impact aquatic life in the future. Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. Our study pinpoints the molecular response to elevated CO2 possibly triggering behavioural changes in zebrafish and suggest that not only marine  but also freshwater fishes will be behaviourally affected by acidification due to rapid climate change.", null, null, null, null, "EG6", null, "replicate name:2|breed:AB|age:4 months|dev stage:adult|collection date:2021 11 02|geo loc name:Hong Kong|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of 4mpf Danio rerio gill", "EG6", "EG6", "Total RNA was extracted using the RNeasy Micro Kit Qiagen.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP503258", null, null, "EG6_1.fastq.gz EG6_2.fastq.gz", "fastq fastq", 8347409256.0, 27640428.0, "EG6 1.fastq.gz", "0:151 1:151", "A:2355233426;C:1773374207;G:1954779935;T:2263909727;N:111961", 151, 151, null, null, 2355233426, 1773374207, 1954779935, 2263909727, 111961, "SRX24328697", "SRS21090001", "SRA1849282", "The University of Hong Kong|School of Biological Sciences", "The University of Hong Kong", 2, 0.95759, 0.95489, 0.06473, 0.06571, 0.88262, 0.88428, 0.92671, 0.92842, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-04-22", "Adult", "Adult", "Gill", "Respiratory System"], [31921, "SRR28763312", "SRX24328696", "SRS21090000", "SRP503258", "PRJNA1102381", "Acidification alters anxiety like behaviour and brain gene expression in zebrafish", "PRJNA1102381", "Other", "CO2 driven acidification of freshwater ecosystems is an accelerating process that can impact aquatic life in the future. Despite their importance in accurately predicting how future freshwater teleost fish will respond to changing environments  molecular mechanisms coordinating the response to elevated CO2 have not been extensively studied. Making use of the zebrafish Danio rerio considered 'tolerant' to acidified waters  we analyzed the behavioural and transcriptomic response to acidification to highlight potential response mechanisms in the brain and the gills which mediate behaviour and perform acid base regulation. Adult zebrafish were exposed to control 500 uatm and elevated CO2 1000 uatm for five days and submitted to Open Field and Novel Object Approach tests  revealing a decrease in anxiety like behaviour in response to elevated CO2. In the brain  acidification caused differential expression of genes involved in cytoskeletal organization  cellular transport  immunity and the visual neural system. In the gills  an elevated expression of genes involved in immune response and oxidoreduction with increasing pCO2 in combination with decreased anxiety like behaviour point to an increase of oxidative stress. However  the absence of differentially expressed genes in gills indicates that this species has adapted to regulating its acid base balance in acidified waters  common in its natural habitat. Our study pinpoints the molecular response to elevated CO2 possibly triggering behavioural changes in zebrafish and suggest that not only marine  but also freshwater fishes will be behaviourally affected by acidification due to rapid climate change.", null, null, null, null, "EG5", null, "replicate name:1|breed:AB|age:4 months|dev stage:adult|collection date:2021 11 02|geo loc name:Hong Kong|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of 4mpf Danio rerio gill", "EG5", "EG5", "Total RNA was extracted using the RNeasy Micro Kit Qiagen.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP503258", null, null, "EG5_1.fastq.gz EG5_2.fastq.gz", "fastq fastq", 10544509086.0, 34915593.0, "EG5 1.fastq.gz", "0:151 1:151", "A:2929107857;C:2307092012;G:2499629363;T:2808538620;N:141234", 151, 151, null, null, 2929107857, 2307092012, 2499629363, 2808538620, 141234, "SRX24328696", "SRS21090000", "SRA1849282", "The University of Hong Kong|School of Biological Sciences", "The University of Hong Kong", 2, 0.94866, 0.9474, 0.08636, 0.08561, 0.87545, 0.87726, 0.20035, 0.88059, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-04-22", "Adult", "Adult", "Gill", "Respiratory System"], [70108, "SRR19561928", "SRX15614022", "SRS13314708", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr27 2", "Dr27 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 6 27 2 gill", "6 27 2 gill", "6 27 2 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6006 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "6-27-2-gill-RNA_R1.fq.gz 6-27-2-gill-RNA_R2.fq.gz", "fastq fastq", 15500913600.0, 51669712.0, "6 27 2 gill RNA R1.fq.gz", "0:150 1:150", "A:4095447151;C:3602140382;G:3656584139;T:4146436009;N:305919", 150, 150, null, null, 4095447151, 3602140382, 3656584139, 4146436009, 305919, "SRX15614022", "SRS13314708", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.9293, 0.93327, 0.07792, 0.07755, 0.69351, 0.70057, 0.51318, 0.49677, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70115, "SRR19561935", "SRX15614015", "SRS13314715", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr13 3", "Dr13 3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 41 13 3 gill", "41 13 3 gill", "41 13 3 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6048 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "41-13-3-gill-RNA_R1.fq.gz 41-13-3-gill-RNA_R2.fq.gz", "fastq fastq", 7220390100.0, 24067967.0, "41 13 3 gill RNA R1.fq.gz", "0:150 1:150", "A:1921586224;C:1668980274;G:1684853249;T:1944846933;N:123420", 150, 150, null, null, 1921586224, 1668980274, 1684853249, 1944846933, 123420, "SRX15614015", "SRS13314715", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.925, 0.92628, 0.0907, 0.09092, 0.6872, 0.69625, 0.50732, 0.48568, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70121, "SRR19561941", "SRX15614009", "SRS13314714", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr13 2", "Dr13 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 36 13 2 gill", "36 13 2 gill", "36 13 2 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6042 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "36-13-2-gill-RNA_R1.fq.gz 36-13-2-gill-RNA_R2.fq.gz", "fastq fastq", 7665737400.0, 25552458.0, "36 13 2 gill RNA R1.fq.gz", "0:150 1:150", "A:2016541351;C:1797005643;G:1810103967;T:2041936659;N:149780", 150, 150, null, null, 2016541351, 1797005643, 1810103967, 2041936659, 149780, "SRX15614009", "SRS13314714", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.93252, 0.93866, 0.08604, 0.08654, 0.69059, 0.69349, 0.50048, 0.49744, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70128, "SRR19561948", "SRX15614002", "SRS13314713", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr13 1", "Dr13 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 31 13 1 gill", "31 13 1 gill", "31 13 1 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6036 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "31-13-1-gill-RNA_R1.fq.gz 31-13-1-gill-RNA_R2.fq.gz", "fastq fastq", 7585917900.0, 25286393.0, "31 13 1 gill RNA R1.fq.gz", "0:150 1:150", "A:2014051232;C:1756759053;G:1767708394;T:2047250965;N:148256", 150, 150, null, null, 2014051232, 1756759053, 1767708394, 2047250965, 148256, "SRX15614002", "SRS13314713", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.92182, 0.92679, 0.09269, 0.09288, 0.68941, 0.69365, 0.50632, 0.49887, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70134, "SRR19561954", "SRX15613996", "SRS13314712", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr18 3", "Dr18 3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 26 18 3 gill", "26 18 3 gill", "26 18 3 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6030 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "26-18-3-gill-RNA_R1.fq.gz 26-18-3-gill-RNA_R2.fq.gz", "fastq fastq", 7439334900.0, 24797783.0, "26 18 3 gill RNA R1.fq.gz", "0:150 1:150", "A:1958318506;C:1744878169;G:1748154378;T:1987838580;N:145267", 150, 150, null, null, 1958318506, 1744878169, 1748154378, 1987838580, 145267, "SRX15613996", "SRS13314712", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.93062, 0.93534, 0.08514, 0.0852, 0.6884, 0.69221, 0.48492, 0.48516, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70141, "SRR19561961", "SRX15613989", "SRS13314711", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr18 2", "Dr18 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 21 18 2 gill", "21 18 2 gill", "21 18 2 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6024 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "21-18-2-gill-RNA_R1.fq.gz 21-18-2-gill-RNA_R2.fq.gz", "fastq fastq", 7517863500.0, 25059545.0, "21 18 2 gill RNA R1.fq.gz", "0:150 1:150", "A:1969417724;C:1766553319;G:1782068790;T:1999678637;N:145030", 150, 150, null, null, 1969417724, 1766553319, 1782068790, 1999678637, 145030, "SRX15613989", "SRS13314711", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.93938, 0.94224, 0.07633, 0.07622, 0.69347, 0.69656, 0.50217, 0.50412, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70148, "SRR19561968", "SRX15613982", "SRS13314710", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr18 1", "Dr18 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 16 18 1 gill", "16 18 1 gill", "16 18 1 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6018 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "16-18-1-gill-RNA_R1.fq.gz 16-18-1-gill-RNA_R2.fq.gz", "fastq fastq", 5988825000.0, 19962750.0, "16 18 1 gill RNA R1.fq.gz", "0:150 1:150", "A:1602220465;C:1376565952;G:1387172781;T:1622748254;N:117548", 150, 150, null, null, 1602220465, 1376565952, 1387172781, 1622748254, 117548, "SRX15613982", "SRS13314710", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.9336, 0.93326, 0.08606, 0.0867, 0.68515, 0.69351, 0.47018, 0.50159, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70154, "SRR19561974", "SRX15613976", "SRS13314709", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr27 3", "Dr27 3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 11 27 3 gill", "11 27 3 gill", "11 27 3 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6012 illumina platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP378802", null, null, "11-27-3-gill-RNA_R1.fq.gz 11-27-3-gill-RNA_R2.fq.gz", "fastq fastq", 7311778500.0, 24372595.0, "11 27 3 gill RNA R1.fq.gz", "0:150 1:150", "A:1930903739;C:1701742166;G:1720582156;T:1958404786;N:145653", 150, 150, null, null, 1930903739, 1701742166, 1720582156, 1958404786, 145653, "SRX15613976", "SRS13314709", "SRA1432943", "shanghai ocean university|College of Fisheries and Life Science", "shanghai ocean university", 2, 0.92776, 0.9312, 0.0792, 0.0784, 0.69694, 0.70303, 0.51502, 0.50193, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Adult", "Adult", "Gill", "Respiratory System"], [70158, "SRR19561978", "SRX15613972", "SRS13314707", "SRP378802", "PRJNA846110", "Danio rerio Raw sequence reads", "PRJNA846110", "Other", "Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio", null, null, null, "Dr27 1", "Dr27 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult female 1 27 1 gill", "1 27 1 gill", "1 27 1 gill", "All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  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