{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"PCR\" and technology = \"unknown\"", "rows": [[8076, "ERR2304209", "ERX2355537", "ERS2201745", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged mutant biorep3", "SAMEA104590463", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12", "9 psen1K97Gfshet 24mth 13 03 2014 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz", "fastq fastq", 9318039088.0, 38360343.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12", "0:121.17 1:121.74", "A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148", 121, 121, null, null, 2583644589, 2091813317, 2105322994, 2536795040, 463148, "ERX2355537", "ERS2201745", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.93003, 0.92836, 0.26254, 0.26157, 0.68992, 0.69593, 0.48246, 0.48292, 134, 134, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8077, "ERR2304208", "ERX2355536", "ERS2201744", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged mutant biorep2", "SAMEA104590462", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11", "8 psen1K97Gfshet 24mth 13 03 2014 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz", "fastq fastq", 8559244581.0, 35608377.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11", "0:119.87 1:120.50", "A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710", 119, 120, null, null, 2397336730, 1892236963, 1910506310, 2358778868, 385710, "ERX2355536", "ERS2201744", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92422, 0.92311, 0.30514, 0.30437, 0.69578, 0.7008, 0.49054, 0.48857, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8078, "ERR2304207", "ERX2355535", "ERS2201743", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged mutant biorep1", "SAMEA104590461", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590461|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep1|common name:zebrafish|sample name:Aged mutant biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10", "7 psen1K97Gfshet 24mth 13 03 2014 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R1.fastq.gz 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R2.fastq.gz", "fastq fastq", 6521711648.0, 27182062.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10", "0:119.65 1:120.27", "A:1831722484;C:1434689482;G:1449266189;T:1805677755;N:355738", 119, 120, null, null, 1831722484, 1434689482, 1449266189, 1805677755, 355738, "ERX2355535", "ERS2201743", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92564, 0.92498, 0.29344, 0.29212, 0.69327, 0.69964, 0.48557, 0.48942, 86, 86, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8079, "ERR2304206", "ERX2355534", "ERS2201742", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged wild type biorep3", "SAMEA104590460", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590460|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep3|common name:zebrafish|sample name:Aged wild type biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9", "3 non mutant K97Gfs 24mth 13 03 2014 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R1.fastq.gz 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R2.fastq.gz", "fastq fastq", 6865452019.0, 28646225.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9", "0:119.50 1:120.16", "A:1903309108;C:1535570672;G:1550661363;T:1875578941;N:331935", 119, 120, null, null, 1903309108, 1535570672, 1550661363, 1875578941, 331935, "ERX2355534", "ERS2201742", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92997, 0.92904, 0.26949, 0.26497, 0.69485, 0.70072, 0.49378, 0.50075, 96, 96, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8080, "ERR2304205", "ERX2355533", "ERS2201741", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged wild type biorep2", "SAMEA104590459", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590459|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep2|common name:zebrafish|sample name:Aged wild type biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8", "2 non mutant K97Gfs 24mth 13 03 2014 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R1.fastq.gz 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R2.fastq.gz", "fastq fastq", 8418868343.0, 34905186.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8", "0:120.29 1:120.91", "A:2334515884;C:1885784857;G:1900432559;T:2297775998;N:359045", 120, 120, null, null, 2334515884, 1885784857, 1900432559, 2297775998, 359045, "ERX2355533", "ERS2201741", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.93078, 0.92967, 0.25478, 0.25365, 0.69372, 0.69938, 0.4988, 0.49709, 132, 132, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8081, "ERR2304204", "ERX2355532", "ERS2201740", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged wild type biorep1", "SAMEA104590458", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590458|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep1|common name:zebrafish|sample name:Aged wild type biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7", "1 non mutant K97Gfs 24mth 13 03 2014 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R1.fastq.gz 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R2.fastq.gz", "fastq fastq", 6628468736.0, 27477727.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7", "0:120.31 1:120.92", "A:1839014115;C:1487750495;G:1497160978;T:1804205119;N:338029", 120, 120, null, null, 1839014115, 1487750495, 1497160978, 1804205119, 338029, "ERX2355532", "ERS2201740", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92916, 0.92783, 0.28453, 0.28375, 0.69798, 0.70289, 0.48132, 0.48227, 125, 125, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8082, "ERR2304203", "ERX2355531", "ERS2201739", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young mutant biorep3", "SAMEA104590457", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590457|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep3|common name:zebrafish|sample name:Young mutant biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6", "12 psen1K97Gfshet 6mth 10 03 2016 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R1.fastq.gz 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R2.fastq.gz", "fastq fastq", 11485397100.0, 38284657.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6", "0:150 1:150", "A:3206707597;C:2539306860;G:2721427816;T:3015264084;N:2690743", 150, 150, null, null, 3206707597, 2539306860, 2721427816, 3015264084, 2690743, "ERX2355531", "ERS2201739", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92853, 0.92813, 0.26757, 0.26433, 0.68487, 0.68903, 0.47708, 0.47074, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8083, "ERR2304202", "ERX2355530", "ERS2201738", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young mutant biorep2", "SAMEA104590456", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590456|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep2|common name:zebrafish|sample name:Young mutant biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5", "11 psen1K97Gfshet 6mth 10 03 2016 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R1.fastq.gz 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R2.fastq.gz", "fastq fastq", 13258122000.0, 44193740.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5", "0:150 1:150", "A:3781076311;C:2868334319;G:3063279426;T:3542309854;N:3122090", 150, 150, null, null, 3781076311, 2868334319, 3063279426, 3542309854, 3122090, "ERX2355530", "ERS2201738", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91552, 0.91659, 0.32337, 0.32168, 0.69546, 0.698, 0.4697, 0.47295, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8084, "ERR2304201", "ERX2355529", "ERS2201737", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young mutant biorep1", "SAMEA104590455", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4", "10 psen1K97Gfshet 6mth 10 03 2016 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz", "fastq fastq", 11724649800.0, 39082166.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4", "0:150 1:150", "A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083", 150, 150, null, null, 3304100658, 2560616667, 2779636286, 3077545106, 2751083, "ERX2355529", "ERS2201737", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92121, 0.91893, 0.28263, 0.27928, 0.69073, 0.6953, 0.47174, 0.46157, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8085, "ERR2304200", "ERX2355528", "ERS2201736", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young wild type biorep3", "SAMEA104590454", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590454|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep3|common name:zebrafish|sample name:Young wild type biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3", "6 non mutant K97Gfs 6mth 10 03 2016 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R2.fastq.gz", "fastq fastq", 24923212200.0, 83077374.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3", "0:150 1:150", "A:7077378299;C:5398402396;G:5838059014;T:6604505033;N:4867458", 150, 150, null, null, 7077378299, 5398402396, 5838059014, 6604505033, 4867458, "ERX2355528", "ERS2201736", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91973, 0.92144, 0.29148, 0.29015, 0.69587, 0.69994, 0.46145, 0.47047, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8086, "ERR2304199", "ERX2355527", "ERS2201735", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young wild type biorep2", "SAMEA104590453", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590453|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep2|common name:zebrafish|sample name:Young wild type biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2", "5 non mutant K97Gfs 6mth 10 03 2016 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R2.fastq.gz", "fastq fastq", 7840317153.0, 39006553.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2", "0:101 1:100", "A:2200490653;C:1718458832;G:1730278863;T:2188900320;N:2188485", 101, 100, null, null, 2200490653, 1718458832, 1730278863, 2188900320, 2188485, "ERX2355527", "ERS2201735", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91783, 0.91983, 0.32092, 0.32105, 0.67714, 0.67691, 0.47312, 0.47481, 101, 100, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8087, "ERR2304198", "ERX2355526", "ERS2201734", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young wild type biorep1", "SAMEA104590452", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1", "4 non mutant K97Gfs 6mth 10 03 2016 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz", "fastq fastq", 13910901600.0, 46369672.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1", "0:150 1:150", "A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629", 150, 150, null, null, 3994738757, 2957179645, 3191379676, 3764325893, 3277629, "ERX2355526", "ERS2201734", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91399, 0.9166, 0.3202, 0.31818, 0.6942, 0.698, 0.46902, 0.47111, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [28470, "SRR26253203", "SRX21963295", "SRS19039869", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN4 2", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 22|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFND2", "Small RNA IFND2", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN4-2.deadaptor.fq.gz", "fastq", 278362309.0, 11056139.0, "IFN4 2.deadaptor.fq.gz", "0:25.18", "A:71944968;C:54562141;G:73333701;T:78511075;N:10424", 25, null, null, null, 71944968, 54562141, 73333701, 78511075, 10424, "SRX21963295", "SRS19039869", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.93133, null, 0.07401, null, 0.96181, null, 0.74558, null, 31, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28471, "SRR26253204", "SRX21963294", "SRS19039868", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN4 1", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 21|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFND1", "Small RNA IFND1", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN4-1.deadaptor.fq.gz", "fastq", 289362334.0, 11048590.0, "IFN4 1.deadaptor.fq.gz", "0:26.19", "A:73933649;C:59386039;G:76847534;T:79184583;N:10529", 26, null, null, null, 73933649, 59386039, 76847534, 79184583, 10529, "SRX21963294", "SRS19039868", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.91683, null, 0.07099, null, 0.96132, null, 0.64882, null, 25, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28472, "SRR26253205", "SRX21963293", "SRS19039867", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN1 4", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 20|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFNA4", "Small RNA IFNA4", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN1-4.deadaptor.fq.gz", "fastq", 270529395.0, 11070360.0, "IFN1 4.deadaptor.fq.gz", "0:24.44", "A:69759888;C:54924667;G:71358091;T:74470720;N:16029", 24, null, null, null, 69759888, 54924667, 71358091, 74470720, 16029, "SRX21963293", "SRS19039867", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.88469, null, 0.06696, null, 0.96664, null, 0.74853, null, 22, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28473, "SRR26253206", "SRX21963292", "SRS19039866", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN1 3", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 19|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFNA3", "Small RNA IFNA3", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN1-3.deadaptor.fq.gz", "fastq", 353291957.0, 11740560.0, "IFN1 3.deadaptor.fq.gz", "0:30.09", "A:89026549;C:76490337;G:94719420;T:93036955;N:18696", 30, null, null, null, 89026549, 76490337, 94719420, 93036955, 18696, "SRX21963292", "SRS19039866", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.83151, null, 0.07199, null, 0.96471, null, 0.71641, null, 22, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28474, "SRR26253207", "SRX21963291", "SRS19039865", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN1 2", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 18|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFNA2", "Small RNA IFNA2", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN1-2.deadaptor.fq.gz", "fastq", 257949577.0, 11213774.0, "IFN1 2.deadaptor.fq.gz", "0:23.00", "A:67371681;C:51128621;G:67605590;T:71826657;N:17028", 23, null, null, null, 67371681, 51128621, 67605590, 71826657, 17028, "SRX21963291", "SRS19039865", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.91396, null, 0.06536, null, 0.97197, null, 0.76269, null, 23, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28475, "SRR26253208", "SRX21963290", "SRS19039864", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN1 1", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 17|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFNA1", "Small RNA IFNA1", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN1-1.deadaptor.fq.gz", "fastq", 329358383.0, 11799176.0, "IFN1 1.deadaptor.fq.gz", "0:27.91", "A:84093681;C:68961271;G:86502739;T:89779605;N:21087", 27, null, null, null, 84093681, 68961271, 86502739, 89779605, 21087, "SRX21963290", "SRS19039864", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.92116, null, 0.07483, null, 0.96796, null, 0.75179, null, 22, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28476, "SRR26253209", "SRX21963289", "SRS19039863", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA Control 4", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 16|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA C4", "Small RNA C4", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "Control-4.deadaptor.fq.gz", "fastq", 251577736.0, 10951659.0, "Control 4.deadaptor.fq.gz", "0:22.97", "A:65382449;C:50041232;G:66038625;T:70106464;N:8966", 22, null, null, null, 65382449, 50041232, 66038625, 70106464, 8966, "SRX21963289", "SRS19039863", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.89744, null, 0.06821, null, 0.96607, null, 0.63829, null, 22, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28477, "SRR26253210", "SRX21963288", "SRS19039862", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA Control 3", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 15|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA C3", "Small RNA C3", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "Control-3.deadaptor.fq.gz", "fastq", 252164979.0, 11004167.0, "Control 3.deadaptor.fq.gz", "0:22.92", "A:65850899;C:48466665;G:66708038;T:71130786;N:8591", 22, null, null, null, 65850899, 48466665, 66708038, 71130786, 8591, "SRX21963288", "SRS19039862", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.91567, null, 0.06804, null, 0.96278, null, 0.75579, null, 22, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28478, "SRR26253211", "SRX21963287", "SRS19039861", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN4 4", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 24|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFND4", "Small RNA IFND4", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN4-4.deadaptor.fq.gz", "fastq", 291708053.0, 11503883.0, "IFN4 4.deadaptor.fq.gz", "0:25.36", "A:74079231;C:61368459;G:76898572;T:79351225;N:10566", 25, null, null, null, 74079231, 61368459, 76898572, 79351225, 10566, "SRX21963287", "SRS19039861", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.88888, null, 0.0633, null, 0.97305, null, 0.74862, null, 23, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28479, "SRR26253212", "SRX21963286", "SRS19039860", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN4 3", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 23|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFND3", "Small RNA IFND3", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN4-3.deadaptor.fq.gz", "fastq", 349995495.0, 11885662.0, "IFN4 3.deadaptor.fq.gz", "0:29.45", "A:87443709;C:76373108;G:92741296;T:93425866;N:11516", 29, null, null, null, 87443709, 76373108, 92741296, 93425866, 11516, "SRX21963286", "SRS19039860", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.92619, null, 0.06843, null, 0.9709, null, 0.74977, null, 73, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28480, "SRR26253213", "SRX21963285", "SRS19039859", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA Control 2", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 14|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA C2", "Small RNA C2", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "Control-2.deadaptor.fq.gz", "fastq", 254163676.0, 10744164.0, "Control 2.deadaptor.fq.gz", "0:23.66", "A:66003417;C:49309846;G:67463940;T:71377644;N:8829", 23, null, null, null, 66003417, 49309846, 67463940, 71377644, 8829, "SRX21963285", "SRS19039859", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.93068, null, 0.06626, null, 0.96441, null, 0.7492, null, 22, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28481, "SRR26253214", "SRX21963284", "SRS19039858", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost  type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However  their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes   conferring cell resistance to viruses. However  the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4  ZF4 cells were stimulated with recombinant IFN1 and IFN4  and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA Control 1", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 13|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA C1", "Small RNA C1", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "Control-1.deadaptor.fq.gz", "fastq", 267090429.0, 11027241.0, "Control 1.deadaptor.fq.gz", "0:24.22", "A:70162511;C:50705437;G:69872659;T:76339682;N:10140", 24, null, null, null, 70162511, 50705437, 69872659, 76339682, 10140, "SRX21963284", "SRS19039858", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.93267, null, 0.07189, null, 0.96735, null, 0.75447, null, 21, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [29168, "SRR27217530", "SRX22896259", "SRS19868304", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "WT PGC 24 3", null, "strain:WT3|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT PGC 24 3", "WT PGC 24 3", "WT PGC 24 3", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "WT_PGC_24-3_R2.fq.gz WT_PGC_24-3_R1.fq.gz", "fastq fastq", 6949077900.0, 23163593.0, "WT PGC 24 3 R1.fq.gz", "0:150 1:150", "A:1804348571;C:1658503849;G:1701777260;T:1784405264;N:42956", 150, 150, null, null, 1804348571, 1658503849, 1701777260, 1784405264, 42956, "SRX22896259", "SRS19868304", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95381, 0.95191, 0.06445, 0.06402, 0.7069, 0.7083, 0.47573, 0.47795, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29169, "SRR27217531", "SRX22896258", "SRS19868303", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "WT PGC 24 2", null, "strain:WT2|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT PGC 24 2", "WT PGC 24 2", "WT PGC 24 2", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "WT_PGC_24-2_R1.fq.gz WT_PGC_24-2_R2.fq.gz", "fastq fastq", 6675099900.0, 22250333.0, "WT PGC 24 2 R1.fq.gz", "0:150 1:150", "A:1719486221;C:1606465584;G:1644483527;T:1704624083;N:40485", 150, 150, null, null, 1719486221, 1606465584, 1644483527, 1704624083, 40485, "SRX22896258", "SRS19868303", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95744, 0.95652, 0.04846, 0.04825, 0.70804, 0.70912, 0.46447, 0.46577, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29170, "SRR27217532", "SRX22896257", "SRS19868302", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "WT PGC 24 1", null, "strain:WT1|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT PGC 24 1", "WT PGC 24 1", "WT PGC 24 1", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "WT_PGC_24-1_R1.fq.gz WT_PGC_24-1_R2.fq.gz", "fastq fastq", 7064831700.0, 23549439.0, "WT PGC 24 1 R1.fq.gz", "0:150 1:150", "A:1832305833;C:1686352652;G:1738278540;T:1807852822;N:41853", 150, 150, null, null, 1832305833, 1686352652, 1738278540, 1807852822, 41853, "SRX22896257", "SRS19868302", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95848, 0.95777, 0.0631, 0.06254, 0.72157, 0.72247, 0.4731, 0.47372, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29171, "SRR27217533", "SRX22896256", "SRS19868301", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "A1 PGC 24 3", null, "strain:TRPA1b KO3|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1 PGC 24 3", "A1 PGC 24 3", "A1 PGC 24 3", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "A1_PGC_24-3_R1.fq.gz A1_PGC_24-3_R2.fq.gz", "fastq fastq", 6953061600.0, 23176872.0, "A1 PGC 24 3 R1.fq.gz", "0:150 1:150", "A:1810976064;C:1652614300;G:1697456695;T:1791972886;N:41655", 150, 150, null, null, 1810976064, 1652614300, 1697456695, 1791972886, 41655, "SRX22896256", "SRS19868301", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95143, 0.95105, 0.07009, 0.06986, 0.69627, 0.6969, 0.46658, 0.46554, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29172, "SRR27217534", "SRX22896255", "SRS19868300", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "A1 PGC 24 2", null, "strain:TRPA1b KO2|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1 PGC 24 2", "A1 PGC 24 2", "A1 PGC 24 2", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "A1_PGC_24-2_R1.fq.gz A1_PGC_24-2_R2.fq.gz", "fastq fastq", 6940389600.0, 23134632.0, "A1 PGC 24 2 R1.fq.gz", "0:150 1:150", "A:1785833122;C:1673393460;G:1710182746;T:1770937783;N:42489", 150, 150, null, null, 1785833122, 1673393460, 1710182746, 1770937783, 42489, "SRX22896255", "SRS19868300", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95372, 0.95441, 0.06919, 0.06949, 0.70013, 0.70177, 0.47547, 0.47456, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29173, "SRR27217535", "SRX22896254", "SRS19868299", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "A1 PGC 24 1", null, "strain:TRPA1b KO1|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1 PGC 24 1", "A1 PGC 24 1", "A1 PGC 24 1", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "A1_PGC_24-1_R1.fq.gz A1_PGC_24-1_R2.fq.gz", "fastq fastq", 6604300500.0, 22014335.0, "A1 PGC 24 1 R1.fq.gz", "0:150 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Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM1.raw_2.fastq.gz BPM1.raw_1.fastq.gz", "fastq fastq", 9394450800.0, 31314836.0, "BPM1.raw 1.fastq.gz", "0:150 1:150", "A:2554382711;C:2098883579;G:2207645797;T:2533462469;N:76244", 150, 150, null, null, 2554382711, 2098883579, 2207645797, 2533462469, 76244, "SRX24070103", "SRS20860625", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94127, 0.93972, 0.1164, 0.11723, 0.67308, 0.67673, 0.49857, 0.50613, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31531, "SRR28467113", "SRX24070102", "SRS20860624", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 3", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 3", "ZXY BPG 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG3.raw_1.fastq.gz BPG3.raw_2.fastq.gz", "fastq fastq", 10077237000.0, 33590790.0, "BPG3.raw 1.fastq.gz", "0:150 1:150", "A:2739033278;C:2249842624;G:2379133275;T:2709150044;N:77779", 150, 150, null, null, 2739033278, 2249842624, 2379133275, 2709150044, 77779, "SRX24070102", "SRS20860624", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94306, 0.94056, 0.10748, 0.10702, 0.67653, 0.67986, 0.5156, 0.50914, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31532, "SRR28467114", "SRX24070101", "SRS20860623", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 2", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 2", "ZXY BPG 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG2.raw_2.fastq.gz BPG2.raw_1.fastq.gz", "fastq fastq", 9510942300.0, 31703141.0, "BPG2.raw 1.fastq.gz", "0:150 1:150", "A:2596352503;C:2120752906;G:2233383807;T:2560375232;N:77852", 150, 150, null, null, 2596352503, 2120752906, 2233383807, 2560375232, 77852, "SRX24070101", "SRS20860623", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94667, 0.94269, 0.10626, 0.10688, 0.67533, 0.68081, 0.49483, 0.49423, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31533, "SRR28467115", "SRX24070100", "SRS20860622", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 1", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 1", "ZXY BPG 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG1.raw_1.fastq.gz BPG1.raw_2.fastq.gz", "fastq fastq", 13070106300.0, 43567021.0, "BPG1.raw 1.fastq.gz", "0:150 1:150", "A:3534452437;C:2939996996;G:3085563305;T:3509989820;N:103742", 150, 150, null, null, 3534452437, 2939996996, 3085563305, 3509989820, 103742, "SRX24070100", "SRS20860622", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9438, 0.94084, 0.10523, 0.10522, 0.67829, 0.68073, 0.49381, 0.49067, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31534, "SRR28467116", "SRX24070099", "SRS20860621", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 3", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 3", "ZXY BPA 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA3.raw_2.fastq.gz BPA3.raw_1.fastq.gz", "fastq fastq", 10411684500.0, 34705615.0, "BPA3.raw 1.fastq.gz", "0:150 1:150", "A:2832043862;C:2321319365;G:2455663475;T:2802571018;N:86780", 150, 150, null, null, 2832043862, 2321319365, 2455663475, 2802571018, 86780, "SRX24070099", "SRS20860621", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94457, 0.94104, 0.11054, 0.10975, 0.66994, 0.67318, 0.51406, 0.50942, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31535, "SRR28467117", "SRX24070098", "SRS20860620", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 2", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 2", "ZXY BPA 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA2.raw_1.fastq.gz BPA2.raw_2.fastq.gz", "fastq fastq", 9661415100.0, 32204717.0, "BPA2.raw 1.fastq.gz", "0:150 1:150", "A:2627401085;C:2157294589;G:2278953763;T:2597686452;N:79211", 150, 150, null, null, 2627401085, 2157294589, 2278953763, 2597686452, 79211, "SRX24070098", "SRS20860620", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9432, 0.94024, 0.10905, 0.10878, 0.67304, 0.6775, 0.50281, 0.50407, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31536, "SRR28467118", "SRX24070097", "SRS20860619", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 1", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 1", "ZXY BPA 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA1.raw_1.fastq.gz BPA1.raw_2.fastq.gz", "fastq fastq", 9717716400.0, 32392388.0, "BPA1.raw 1.fastq.gz", "0:150 1:150", "A:2650893145;C:2181496527;G:2254888972;T:2630357805;N:79951", 150, 150, null, null, 2650893145, 2181496527, 2254888972, 2630357805, 79951, "SRX24070097", "SRS20860619", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94789, 0.94422, 0.10681, 0.1065, 0.66833, 0.67377, 0.50841, 0.5025, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31537, "SRR28467119", "SRX24070096", "SRS20860618", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 3", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 3", "ZXY CK 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control3.raw_1.fastq.gz Control3.raw_2.fastq.gz", "fastq fastq", 8827093200.0, 29423644.0, "Control3.raw 1.fastq.gz", "0:150 1:150", "A:2394211757;C:1989274047;G:2061489648;T:2382044834;N:72914", 150, 150, null, null, 2394211757, 1989274047, 2061489648, 2382044834, 72914, "SRX24070096", "SRS20860618", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94786, 0.9448, 0.10432, 0.10422, 0.67221, 0.67383, 0.51187, 0.50251, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31538, "SRR28467120", "SRX24070095", "SRS20860617", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 3", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 3", "ZXY BPTMC 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC3.raw_1.fastq.gz BPTMC3.raw_2.fastq.gz", "fastq fastq", 10073599500.0, 33578665.0, "BPTMC3.raw 1.fastq.gz", "0:150 1:150", "A:2703808743;C:2256806609;G:2438554304;T:2674346802;N:83042", 150, 150, null, null, 2703808743, 2256806609, 2438554304, 2674346802, 83042, "SRX24070095", "SRS20860617", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94379, 0.89251, 0.09996, 0.09437, 0.67961, 0.68976, 0.50126, 0.51462, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31539, "SRR28467121", "SRX24070094", "SRS20860616", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 2", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 2", "ZXY BPTMC 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC2.raw_1.fastq.gz BPTMC2.raw_2.fastq.gz", "fastq fastq", 9429771000.0, 31432570.0, "BPTMC2.raw 1.fastq.gz", "0:150 1:150", "A:2563993022;C:2099927909;G:2215282718;T:2550488919;N:78432", 150, 150, null, null, 2563993022, 2099927909, 2215282718, 2550488919, 78432, "SRX24070094", "SRS20860616", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94015, 0.93845, 0.11202, 0.11225, 0.68142, 0.68426, 0.50947, 0.46648, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31540, "SRR28467122", "SRX24070093", "SRS20860615", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 1", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 1", "ZXY BPTMC 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. 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RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. 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RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. 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