{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"PCR\", experiment.platform = \"ILLUMINA\" and tissue_curation_coarse = \"All anatomical structures\"", "rows": [[33722, "SRR30640695", "SRX26062515", "SRS22631699", "SRP532179", "PRJNA1159911", "Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate", "PRJNA1159911", "Other", "RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.", null, null, null, null, "WT24hpfcontrol1", null, "breed:natural spawning of AB adults|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:WT24hpfcontrol1 embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of Wild type zebrafish : 12 embryos in total 2 3mg", "WT24hpfcontrol1 R", 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developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.", null, null, null, null, "WT24hpfcontrol3", null, "breed:natural spawning of AB adults|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:WT24hpfcontrol3 embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of Wild type zebrafish : 12 embryos in total 2 5mg", "WT24hpfcontrol3 R", "WT24hpfcontrol3 R", "Wild type zebrafish", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 1000", null, "SRP532179", null, null, "WT24hpfcontrol3_R1.clean.fq.gz WT24hpfcontrol3_R2.clean.fq.gz", "fastq fastq", 5047867453.0, 19837417.0, "WT24hpfcontrol3 R1.clean.fq.gz", "0:127.23 1:127.23", "A:1412463929;C:1119657233;G:1121642146;T:1394058438;N:45707", 127, 127, null, null, 1412463929, 1119657233, 1121642146, 1394058438, 45707, "SRX26062507", "SRS22631691", 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"random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-11", "Multi-stage", "Multi-stage", "Embryo Imprecise", "All anatomical structures"], [33732, "SRR30640705", "SRX26062505", "SRS22631689", "SRP532179", "PRJNA1159911", "Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate", "PRJNA1159911", "Other", "RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.", null, null, null, null, "PCM1KOcompensate2", null, "breed:Tg [HuC:GFP|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOcompensate2 embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of pcm1 KO compensate zebrafish : 12 embryos in total 2 4mg", "PCM1KOcompensate2 R", "PCM1KOcompensate2 R", "pcm1 KO compensate zebrafish", null, null, "RNA-Seq", 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"A:1594003450;C:1214578517;G:1215705001;T:1569880851;N:52062", 131, 131, null, null, 1594003450, 1214578517, 1215705001, 1569880851, 52062, "SRX26062504", "SRS22631688", "SRA1970017", "Huazhong Agricultural University, China|Department of Neurosurgery", "Huazhong Agricultural University, China", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-11", "Multi-stage", "Multi-stage", "Embryo Imprecise", "All anatomical structures"], [33871, "SRR30814554", "SRX26215071", "SRS22758079", "SRP535175", "PRJNA1165428", "Danio rerio Transcriptome or Gene expression", "PRJNA1165428", "Other", "RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.", null, null, null, "KO3", "KO3", null, "strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 14|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish rfc2 ko03", "zf ko 03", "zf ko 03", "Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X", null, "SRP535175", null, null, "KO3_1.fastq KO3_2.fastq", "fastq fastq", 6572467676.0, 21763138.0, "KO3 1.fastq", "0:151 1:151", "A:1814369939;C:1452368734;G:1505310751;T:1800408231;N:10021", 151, 151, null, null, 1814369939, 1452368734, 1505310751, 1800408231, 10021, "SRX26215071", "SRS22758079", "SRA1980706", "Chungnam National University|Department of Biology", "Chungnam National University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "South Korea", "2024-09-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33872, "SRR30814555", "SRX26215070", "SRS22758078", "SRP535175", "PRJNA1165428", "Danio rerio Transcriptome or Gene expression", "PRJNA1165428", "Other", "RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.", null, null, null, "KO2", "KO2", null, "strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 12|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish rfc2 ko02", "zf ko 02", "zf ko 02", "Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X", null, "SRP535175", null, null, "KO2_1.fastq KO2_2.fastq", "fastq fastq", 6712882576.0, 22228088.0, "KO2 1.fastq", "0:151 1:151", "A:1809986030;C:1515597384;G:1598845682;T:1788443120;N:10360", 151, 151, null, null, 1809986030, 1515597384, 1598845682, 1788443120, 10360, "SRX26215070", "SRS22758078", "SRA1980706", "Chungnam National University|Department of Biology", "Chungnam National University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "South Korea", "2024-09-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33873, "SRR30814556", "SRX26215069", "SRS22758076", "SRP535175", "PRJNA1165428", "Danio rerio Transcriptome or Gene expression", "PRJNA1165428", "Other", "RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.", null, null, null, "KO1", "KO1", null, "strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 10|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish rfc2 ko01", "zf ko 01", "zf ko 01", "Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X", null, "SRP535175", null, null, "KO1_1.fastq KO1_2.fastq", "fastq fastq", 6172941004.0, 20440202.0, "KO1 1.fastq", "0:151 1:151", "A:1700989337;C:1362585978;G:1431740094;T:1677616401;N:9194", 151, 151, null, null, 1700989337, 1362585978, 1431740094, 1677616401, 9194, "SRX26215069", "SRS22758076", "SRA1980706", "Chungnam National University|Department of Biology", "Chungnam National University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "South Korea", "2024-09-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33874, "SRR30814557", "SRX26215068", "SRS22758077", "SRP535175", "PRJNA1165428", "Danio rerio Transcriptome or Gene expression", "PRJNA1165428", "Other", "RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.", null, null, null, "WT3", "WT3", null, "strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 08|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish rfc2 wt03", "zf wt 03", "zf wt 03", "Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X", null, "SRP535175", null, null, "WT3_1.fastq WT3_2.fastq", "fastq fastq", 7481914402.0, 24774551.0, "WT3 1.fastq", "0:151 1:151", "A:2053911721;C:1669466343;G:1724274989;T:2034249790;N:11559", 151, 151, null, null, 2053911721, 1669466343, 1724274989, 2034249790, 11559, "SRX26215068", "SRS22758077", "SRA1980706", "Chungnam National University|Department of Biology", "Chungnam National University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "South Korea", "2024-09-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33875, "SRR30814558", "SRX26215067", "SRS22758074", "SRP535175", "PRJNA1165428", "Danio rerio Transcriptome or Gene expression", "PRJNA1165428", "Other", "RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.", null, null, null, "WT2", "WT2", null, "strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 06|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish rfc2 wt02", "zf wt 02", "zf wt 02", "Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X", null, "SRP535175", null, null, "WT2_1.fastq WT2_2.fastq", "fastq fastq", 7406291488.0, 24524144.0, "WT2 1.fastq", "0:151 1:151", "A:2028130386;C:1659349646;G:1712132015;T:2006666583;N:12858", 151, 151, null, null, 2028130386, 1659349646, 1712132015, 2006666583, 12858, "SRX26215067", "SRS22758074", "SRA1980706", "Chungnam National University|Department of Biology", "Chungnam National University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "South Korea", "2024-09-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33876, "SRR30814559", "SRX26215066", "SRS22758075", "SRP535175", "PRJNA1165428", "Danio rerio Transcriptome or Gene expression", "PRJNA1165428", "Other", "RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.", null, null, null, "WT1", "WT1", null, "strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 04|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish rfc2 wt01", "zf wt 01", "zf wt 01", "Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X", null, "SRP535175", null, null, "WT1_1.fastq WT1_2.fastq", "fastq fastq", 7226611756.0, 23929178.0, "WT1 1.fastq", "0:151 1:151", "A:1947187816;C:1649828636;G:1705449995;T:1924134231;N:11078", 151, 151, null, null, 1947187816, 1649828636, 1705449995, 1924134231, 11078, "SRX26215066", "SRS22758075", "SRA1980706", "Chungnam National University|Department of Biology", "Chungnam National University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "South Korea", "2024-09-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33952, "SRR31021716", "SRX26408835", "SRS22928744", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 1 1", "P120 SME 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B335|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B335", "B335", "B335", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B335_S35_R1_001.fastq.gz B335_S35_R2_001.fastq.gz", "fastq fastq", 1692783800.0, 16927838.0, "B335 S35 R1 001.fastq.gz", "0:50 1:50", "A:435169158;C:407357709;G:414261716;T:435986654;N:8563", 50, 50, null, null, 435169158, 407357709, 414261716, 435986654, 8563, "SRX26408835", "SRS22928744", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33953, "SRR31021717", "SRX26408834", "SRS22928745", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 0.1 3", "P120 SLO 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B334|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B334", "B334", "B334", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B334_S34_R1_001.fastq.gz B334_S34_R2_001.fastq.gz", "fastq fastq", 1886363200.0, 18863632.0, "B334 S34 R1 001.fastq.gz", "0:50 1:50", "A:490356255;C:449743241;G:455258475;T:490994958;N:10271", 50, 50, null, null, 490356255, 449743241, 455258475, 490994958, 10271, "SRX26408834", "SRS22928745", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33954, "SRR31021718", "SRX26408833", "SRS22928747", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 0.1 2", "P120 SLO 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B333|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B333", "B333", "B333", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B333_S2_R1_001.fastq.gz B333_S2_R2_001.fastq.gz", "fastq fastq", 2051063200.0, 20510632.0, "B333 S2 R1 001.fastq.gz", "0:50 1:50", "A:537236574;C:487312859;G:489581035;T:536921586;N:11146", 50, 50, null, null, 537236574, 487312859, 489581035, 536921586, 11146, "SRX26408833", "SRS22928747", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33955, "SRR31021719", "SRX26408832", "SRS22928741", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 0.1 1", "P120 SLO 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B332|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B332", "B332", "B332", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B332_S32_R1_001.fastq.gz B332_S32_R2_001.fastq.gz", "fastq fastq", 1902518500.0, 19025185.0, "B332 S32 R1 001.fastq.gz", "0:50 1:50", "A:496999311;C:450985865;G:457467495;T:497055262;N:10567", 50, 50, null, null, 496999311, 450985865, 457467495, 497055262, 10567, "SRX26408832", "SRS22928741", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33956, "SRR31021720", "SRX26408831", "SRS22928742", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 10 3", "N120 WHI 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B358|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B358", "B358", "B358", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B358_S58_R1_001.fastq.gz B358_S58_R2_001.fastq.gz", "fastq fastq", 3412618400.0, 34126184.0, "B358 S58 R1 001.fastq.gz", "0:50 1:50", "A:882127346;C:817215325;G:830793970;T:882463986;N:17773", 50, 50, null, null, 882127346, 817215325, 830793970, 882463986, 17773, "SRX26408831", "SRS22928742", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33957, "SRR31021721", "SRX26408830", "SRS22928743", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 10 2", "N120 WHI 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B357|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B357", "B357", "B357", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B357_S57_R1_001.fastq.gz B357_S57_R2_001.fastq.gz", "fastq fastq", 2930483600.0, 29304836.0, "B357 S57 R1 001.fastq.gz", "0:50 1:50", "A:758920208;C:700274298;G:712310919;T:758962702;N:15473", 50, 50, null, null, 758920208, 700274298, 712310919, 758962702, 15473, "SRX26408830", "SRS22928743", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33958, "SRR31021722", "SRX26408829", "SRS22928746", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 10 1", "N120 WHI 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B356|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B356", "B356", "B356", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B356_S56_R1_001.fastq.gz B356_S56_R2_001.fastq.gz", "fastq fastq", 2284414000.0, 22844140.0, "B356 S56 R1 001.fastq.gz", "0:50 1:50", "A:594288899;C:544894478;G:551263068;T:593955741;N:11814", 50, 50, null, null, 594288899, 544894478, 551263068, 593955741, 11814, "SRX26408829", "SRS22928746", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33959, "SRR31021723", "SRX26408828", "SRS22928740", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 1 3", "N120 WME 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B355|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B355", "B355", "B355", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B355_S55_R1_001.fastq.gz B355_S55_R2_001.fastq.gz", "fastq fastq", 2176173500.0, 21761735.0, "B355 S55 R1 001.fastq.gz", "0:50 1:50", "A:566136122;C:518747894;G:524997369;T:566280934;N:11181", 50, 50, null, null, 566136122, 518747894, 524997369, 566280934, 11181, "SRX26408828", "SRS22928740", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33960, "SRR31021724", "SRX26408827", "SRS22928739", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 1 2", "N120 WME 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B354|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B354", "B354", "B354", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B354_S54_R1_001.fastq.gz B354_S54_R2_001.fastq.gz", "fastq fastq", 1453456700.0, 14534567.0, "B354 S54 R1 001.fastq.gz", "0:50 1:50", "A:372508432;C:352568689;G:356955359;T:371416134;N:8086", 50, 50, null, null, 372508432, 352568689, 356955359, 371416134, 8086, "SRX26408827", "SRS22928739", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33961, "SRR31021725", "SRX26408826", "SRS22928748", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 1 1", "N120 WME 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B353|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B353", "B353", "B353", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B353_S53_R1_001.fastq.gz B353_S53_R2_001.fastq.gz", "fastq fastq", 1650491800.0, 16504918.0, "B353 S53 R1 001.fastq.gz", "0:50 1:50", "A:425690515;C:395504907;G:402582077;T:426705722;N:8579", 50, 50, null, null, 425690515, 395504907, 402582077, 426705722, 8579, "SRX26408826", "SRS22928748", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33962, "SRR31021726", "SRX26408825", "SRS22928738", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 0.1 3", "N120 WLO 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B352|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B352", "B352", "B352", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B352_S52_R1_001.fastq.gz B352_S52_R2_001.fastq.gz", "fastq fastq", 1346045100.0, 13460451.0, "B352 S52 R1 001.fastq.gz", "0:50 1:50", "A:346386405;C:323951010;G:329014244;T:346686818;N:6623", 50, 50, null, null, 346386405, 323951010, 329014244, 346686818, 6623, "SRX26408825", "SRS22928738", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33963, "SRR31021727", "SRX26408824", "SRS22928737", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 0.1 2", "N120 WLO 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B351|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B351", "B351", "B351", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B351_S51_R1_001.fastq.gz B351_S51_R2_001.fastq.gz", "fastq fastq", 1506763300.0, 15067633.0, "B351 S51 R1 001.fastq.gz", "0:50 1:50", "A:388854340;C:361527972;G:367405227;T:388967763;N:7998", 50, 50, null, null, 388854340, 361527972, 367405227, 388967763, 7998, "SRX26408824", "SRS22928737", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33964, "SRR31021728", "SRX26408823", "SRS22928735", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "NH2 0.1 1", "N120 WLO 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B350|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B350", "B350", "B350", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B350_S50_R1_001.fastq.gz B350_S50_R2_001.fastq.gz", "fastq fastq", 1428442600.0, 14284426.0, "B350 S50 R1 001.fastq.gz", "0:50 1:50", "A:366939696;C:343871821;G:350258778;T:367364804;N:7501", 50, 50, null, null, 366939696, 343871821, 350258778, 367364804, 7501, "SRX26408823", "SRS22928735", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33965, "SRR31021729", "SRX26408822", "SRS22928736", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 10 3", "C120 THI 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B349|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B349", "B349", "B349", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B349_S49_R1_001.fastq.gz B349_S49_R2_001.fastq.gz", "fastq fastq", 1550515000.0, 15505150.0, "B349 S49 R1 001.fastq.gz", "0:50 1:50", "A:403378506;C:368600965;G:373988430;T:404539249;N:7850", 50, 50, null, null, 403378506, 368600965, 373988430, 404539249, 7850, "SRX26408822", "SRS22928736", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33966, "SRR31021730", "SRX26408821", "SRS22928734", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "Control 3", "Z120 C 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B331|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B331", "B331", "B331", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B331_S31_R1_001.fastq.gz B331_S31_R2_001.fastq.gz", "fastq fastq", 2108365300.0, 21083653.0, "B331 S31 R1 001.fastq.gz", "0:50 1:50", "A:542633636;C:506240722;G:516054000;T:543425824;N:11118", 50, 50, null, null, 542633636, 506240722, 516054000, 543425824, 11118, "SRX26408821", "SRS22928734", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33967, "SRR31021731", "SRX26408820", "SRS22928733", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 10 2", "C120 THI 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B348|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B348", "B348", "B348", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B348_S48_R1_001.fastq.gz B348_S48_R2_001.fastq.gz", "fastq fastq", 1606689800.0, 16066898.0, "B348 S48 R1 001.fastq.gz", "0:50 1:50", "A:417464063;C:382987928;G:388189552;T:418040054;N:8203", 50, 50, null, null, 417464063, 382987928, 388189552, 418040054, 8203, "SRX26408820", "SRS22928733", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33968, "SRR31021732", "SRX26408819", "SRS22928728", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 10 1", "C120 THI 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B347|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B347", "B347", "B347", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B347_S47_R1_001.fastq.gz B347_S47_R2_001.fastq.gz", "fastq fastq", 2913827500.0, 29138275.0, "B347 S47 R1 001.fastq.gz", "0:50 1:50", "A:761302997;C:691474819;G:698510506;T:762523760;N:15418", 50, 50, null, null, 761302997, 691474819, 698510506, 762523760, 15418, "SRX26408819", "SRS22928728", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33969, "SRR31021733", "SRX26408818", "SRS22928725", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 1 3", "C120 TME 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B346|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B346", "B346", "B346", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B346_S46_R1_001.fastq.gz B346_S46_R2_001.fastq.gz", "fastq fastq", 3160750400.0, 31607504.0, "B346 S46 R1 001.fastq.gz", "0:50 1:50", "A:813674918;C:759351240;G:773075909;T:814631535;N:16798", 50, 50, null, null, 813674918, 759351240, 773075909, 814631535, 16798, "SRX26408818", "SRS22928725", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33970, "SRR31021734", "SRX26408817", "SRS22928732", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 1 2", "C120 TME 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B345|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B345", "B345", "B345", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B345_S45_R1_001.fastq.gz B345_S45_R2_001.fastq.gz", "fastq fastq", 2914635800.0, 29146358.0, "B345 S45 R1 001.fastq.gz", "0:50 1:50", "A:746949857;C:703501695;G:715761917;T:748406578;N:15753", 50, 50, null, null, 746949857, 703501695, 715761917, 748406578, 15753, "SRX26408817", "SRS22928732", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33971, "SRR31021735", "SRX26408816", "SRS22928731", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 1 1", "C120 TME 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B344|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B344", "B344", "B344", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B344_S44_R1_001.fastq.gz B344_S44_R2_001.fastq.gz", "fastq fastq", 4554368900.0, 45543689.0, "B344 S44 R1 001.fastq.gz", "0:50 1:50", "A:1165101493;C:1101095529;G:1122931150;T:1165217834;N:22894", 50, 50, null, null, 1165101493, 1101095529, 1122931150, 1165217834, 22894, "SRX26408816", "SRS22928731", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33972, "SRR31021736", "SRX26408815", "SRS22928729", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 0.1 3", "C120 TLO 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B343|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B343", "B343", "B343", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B343_S43_R1_001.fastq.gz B343_S43_R2_001.fastq.gz", "fastq fastq", 2380475200.0, 23804752.0, "B343 S43 R1 001.fastq.gz", "0:50 1:50", "A:607581751;C:575091547;G:590138251;T:607650992;N:12659", 50, 50, null, null, 607581751, 575091547, 590138251, 607650992, 12659, "SRX26408815", "SRS22928729", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33973, "SRR31021737", "SRX26408814", "SRS22928730", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 0.1 2", "C120 TLO 2", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B342|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B342", "B342", "B342", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B342_S42_R1_001.fastq.gz B342_S42_R2_001.fastq.gz", "fastq fastq", 3651867700.0, 36518677.0, "B342 S42 R1 001.fastq.gz", "0:50 1:50", "A:932588654;C:882930334;G:902681378;T:933649498;N:17836", 50, 50, null, null, 932588654, 882930334, 902681378, 933649498, 17836, "SRX26408814", "SRS22928730", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33974, "SRR31021738", "SRX26408813", "SRS22928723", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "COOH 0.1 1", "C120 TLO 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B341|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B341", "B341", "B341", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B341_S3_R1_001.fastq.gz B341_S3_R2_001.fastq.gz", "fastq fastq", 2777695600.0, 27776956.0, "B341 S3 R1 001.fastq.gz", "0:50 1:50", "A:703256824;C:685127064;G:689608205;T:699688785;N:14722", 50, 50, null, null, 703256824, 685127064, 689608205, 699688785, 14722, "SRX26408813", "SRS22928723", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33975, "SRR31021739", "SRX26408812", "SRS22928727", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 10 3", "P120 SHI 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B340|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B340", "B340", "B340", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B340_S40_R1_001.fastq.gz B340_S40_R2_001.fastq.gz", "fastq fastq", 2893779400.0, 28937794.0, "B340 S40 R1 001.fastq.gz", "0:50 1:50", "A:751721935;C:690399655;G:699481416;T:752160975;N:15419", 50, 50, null, null, 751721935, 690399655, 699481416, 752160975, 15419, "SRX26408812", "SRS22928727", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33976, "SRR31021740", "SRX26408811", "SRS22928720", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 10 1", "P120 SHI 1", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B338|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B338", "B338", "B338", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP539040", null, null, "B338_S38_R1_001.fastq.gz B338_S38_R2_001.fastq.gz", "fastq fastq", 2525250300.0, 25252503.0, "B338 S38 R1 001.fastq.gz", "0:50 1:50", "A:654388023;C:601232675;G:613558159;T:656058712;N:12731", 50, 50, null, null, 654388023, 601232675, 613558159, 656058712, 12731, "SRX26408811", "SRS22928720", "SRA1992799", "University of Southern Denmark|Department of Biology", "University of Southern Denmark", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "miseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Denmark", "2024-10-17", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [33977, "SRR31021741", "SRX26408810", "SRS22928724", "SRP539040", "PRJNA1173915", "Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL", "PRJNA1173915", "Other", "This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.", null, null, null, "PS 1 3", "P120 SME 3", null, "strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B337|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of zebrafish: B337", "B337", "B337", "RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. 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