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Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM1.raw_2.fastq.gz BPM1.raw_1.fastq.gz", "fastq fastq", 9394450800.0, 31314836.0, "BPM1.raw 1.fastq.gz", "0:150 1:150", "A:2554382711;C:2098883579;G:2207645797;T:2533462469;N:76244", 150, 150, null, null, 2554382711, 2098883579, 2207645797, 2533462469, 76244, "SRX24070103", "SRS20860625", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94127, 0.93972, 0.1164, 0.11723, 0.67308, 0.67673, 0.49857, 0.50613, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31531, "SRR28467113", "SRX24070102", "SRS20860624", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 3", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 3", "ZXY BPG 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG3.raw_1.fastq.gz BPG3.raw_2.fastq.gz", "fastq fastq", 10077237000.0, 33590790.0, "BPG3.raw 1.fastq.gz", "0:150 1:150", "A:2739033278;C:2249842624;G:2379133275;T:2709150044;N:77779", 150, 150, null, null, 2739033278, 2249842624, 2379133275, 2709150044, 77779, "SRX24070102", "SRS20860624", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94306, 0.94056, 0.10748, 0.10702, 0.67653, 0.67986, 0.5156, 0.50914, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31532, "SRR28467114", "SRX24070101", "SRS20860623", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 2", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 2", "ZXY BPG 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG2.raw_2.fastq.gz BPG2.raw_1.fastq.gz", "fastq fastq", 9510942300.0, 31703141.0, "BPG2.raw 1.fastq.gz", "0:150 1:150", "A:2596352503;C:2120752906;G:2233383807;T:2560375232;N:77852", 150, 150, null, null, 2596352503, 2120752906, 2233383807, 2560375232, 77852, "SRX24070101", "SRS20860623", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94667, 0.94269, 0.10626, 0.10688, 0.67533, 0.68081, 0.49483, 0.49423, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31533, "SRR28467115", "SRX24070100", "SRS20860622", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 1", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 1", "ZXY BPG 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG1.raw_1.fastq.gz BPG1.raw_2.fastq.gz", "fastq fastq", 13070106300.0, 43567021.0, "BPG1.raw 1.fastq.gz", "0:150 1:150", "A:3534452437;C:2939996996;G:3085563305;T:3509989820;N:103742", 150, 150, null, null, 3534452437, 2939996996, 3085563305, 3509989820, 103742, "SRX24070100", "SRS20860622", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9438, 0.94084, 0.10523, 0.10522, 0.67829, 0.68073, 0.49381, 0.49067, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31534, "SRR28467116", "SRX24070099", "SRS20860621", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 3", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 3", "ZXY BPA 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA3.raw_2.fastq.gz BPA3.raw_1.fastq.gz", "fastq fastq", 10411684500.0, 34705615.0, "BPA3.raw 1.fastq.gz", "0:150 1:150", "A:2832043862;C:2321319365;G:2455663475;T:2802571018;N:86780", 150, 150, null, null, 2832043862, 2321319365, 2455663475, 2802571018, 86780, "SRX24070099", "SRS20860621", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94457, 0.94104, 0.11054, 0.10975, 0.66994, 0.67318, 0.51406, 0.50942, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31535, "SRR28467117", "SRX24070098", "SRS20860620", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 2", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 2", "ZXY BPA 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA2.raw_1.fastq.gz BPA2.raw_2.fastq.gz", "fastq fastq", 9661415100.0, 32204717.0, "BPA2.raw 1.fastq.gz", "0:150 1:150", "A:2627401085;C:2157294589;G:2278953763;T:2597686452;N:79211", 150, 150, null, null, 2627401085, 2157294589, 2278953763, 2597686452, 79211, "SRX24070098", "SRS20860620", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9432, 0.94024, 0.10905, 0.10878, 0.67304, 0.6775, 0.50281, 0.50407, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31536, "SRR28467118", "SRX24070097", "SRS20860619", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 1", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 1", "ZXY BPA 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA1.raw_1.fastq.gz BPA1.raw_2.fastq.gz", "fastq fastq", 9717716400.0, 32392388.0, "BPA1.raw 1.fastq.gz", "0:150 1:150", "A:2650893145;C:2181496527;G:2254888972;T:2630357805;N:79951", 150, 150, null, null, 2650893145, 2181496527, 2254888972, 2630357805, 79951, "SRX24070097", "SRS20860619", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94789, 0.94422, 0.10681, 0.1065, 0.66833, 0.67377, 0.50841, 0.5025, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31537, "SRR28467119", "SRX24070096", "SRS20860618", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 3", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 3", "ZXY CK 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control3.raw_1.fastq.gz Control3.raw_2.fastq.gz", "fastq fastq", 8827093200.0, 29423644.0, "Control3.raw 1.fastq.gz", "0:150 1:150", "A:2394211757;C:1989274047;G:2061489648;T:2382044834;N:72914", 150, 150, null, null, 2394211757, 1989274047, 2061489648, 2382044834, 72914, "SRX24070096", "SRS20860618", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94786, 0.9448, 0.10432, 0.10422, 0.67221, 0.67383, 0.51187, 0.50251, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31538, "SRR28467120", "SRX24070095", "SRS20860617", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 3", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 3", "ZXY BPTMC 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC3.raw_1.fastq.gz BPTMC3.raw_2.fastq.gz", "fastq fastq", 10073599500.0, 33578665.0, "BPTMC3.raw 1.fastq.gz", "0:150 1:150", "A:2703808743;C:2256806609;G:2438554304;T:2674346802;N:83042", 150, 150, null, null, 2703808743, 2256806609, 2438554304, 2674346802, 83042, "SRX24070095", "SRS20860617", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94379, 0.89251, 0.09996, 0.09437, 0.67961, 0.68976, 0.50126, 0.51462, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31539, "SRR28467121", "SRX24070094", "SRS20860616", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 2", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 2", "ZXY BPTMC 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC2.raw_1.fastq.gz BPTMC2.raw_2.fastq.gz", "fastq fastq", 9429771000.0, 31432570.0, "BPTMC2.raw 1.fastq.gz", "0:150 1:150", "A:2563993022;C:2099927909;G:2215282718;T:2550488919;N:78432", 150, 150, null, null, 2563993022, 2099927909, 2215282718, 2550488919, 78432, "SRX24070094", "SRS20860616", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94015, 0.93845, 0.11202, 0.11225, 0.68142, 0.68426, 0.50947, 0.46648, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31540, "SRR28467122", "SRX24070093", "SRS20860615", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 1", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 1", "ZXY BPTMC 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC1.raw_1.fastq.gz BPTMC1.raw_2.fastq.gz", "fastq fastq", 10306275300.0, 34354251.0, "BPTMC1.raw 1.fastq.gz", "0:150 1:150", "A:2813926642;C:2292771191;G:2419432993;T:2780059784;N:84690", 150, 150, null, null, 2813926642, 2292771191, 2419432993, 2780059784, 84690, "SRX24070093", "SRS20860615", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9416, 0.93867, 0.11422, 0.11418, 0.68018, 0.6856, 0.48529, 0.48762, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31541, "SRR28467123", "SRX24070092", "SRS20860614", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPM 3", null, "strain:AB Wild type|isolate:Zebrafish of BPM treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPM 3", "ZXY BPM 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM3.raw_1.fastq.gz BPM3.raw_2.fastq.gz", "fastq fastq", 9935041500.0, 33116805.0, "BPM3.raw 1.fastq.gz", "0:150 1:150", "A:2699556183;C:2237493304;G:2314599682;T:2683312551;N:79780", 150, 150, null, null, 2699556183, 2237493304, 2314599682, 2683312551, 79780, "SRX24070092", "SRS20860614", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94795, 0.94397, 0.10579, 0.10508, 0.67304, 0.67614, 0.48977, 0.49037, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31542, "SRR28467124", "SRX24070091", "SRS20860613", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPM 2", null, "strain:AB Wild type|isolate:Zebrafish of BPM treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPM 2", "ZXY BPM 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM2.raw_1.fastq.gz BPM2.raw_2.fastq.gz", "fastq fastq", 8645715900.0, 28819053.0, "BPM2.raw 1.fastq.gz", "0:150 1:150", "A:2370941492;C:1921770882;G:2002106055;T:2350824859;N:72612", 150, 150, null, null, 2370941492, 1921770882, 2002106055, 2350824859, 72612, "SRX24070091", "SRS20860613", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94303, 0.93986, 0.1216, 0.12095, 0.67154, 0.67385, 0.4964, 0.49763, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31543, "SRR28467125", "SRX24070090", "SRS20860612", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 2", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 2", "ZXY CK 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control2.raw_1.fastq.gz Control2.raw_2.fastq.gz", "fastq fastq", 8728743900.0, 29095813.0, "Control2.raw 1.fastq.gz", "0:150 1:150", "A:2347809691;C:1937189854;G:2127437851;T:2316234453;N:72051", 150, 150, null, null, 2347809691, 1937189854, 2127437851, 2316234453, 72051, "SRX24070090", "SRS20860612", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94052, 0.93739, 0.10645, 0.10488, 0.67915, 0.68377, 0.51064, 0.50924, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31544, "SRR28467126", "SRX24070089", "SRS20860611", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 1", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 1", "ZXY CK 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control1.raw_1.fastq.gz Control1.raw_2.fastq.gz", "fastq fastq", 13197587400.0, 43991958.0, "Control1.raw 1.fastq.gz", "0:150 1:150", "A:3499966481;C:3072967049;G:3152583762;T:3471963983;N:106125", 150, 150, null, null, 3499966481, 3072967049, 3152583762, 3471963983, 106125, "SRX24070089", "SRS20860611", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9548, 0.95216, 0.08791, 0.08792, 0.66841, 0.67241, 0.48738, 0.48068, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [33615, "SRR30272850", "SRX25733949", "SRS22373737", "SRP526812", "PRJNA1148907", "Single cell RNA sequencing to uncover tissue specific transcriptomic changes induced by perfluorooctanesulfonic acid PFOS in larval zebrafish Danio rerio", "PRJNA1148907", "Other", "The aim is to to apply single cell RNA sequencing of zebrafish larvae to identify novel tissue specific mechanisms and processes following embryonic exposure to perfluorooctanesulfonic acid PFOS", null, "pubmed:39947082", null, "PFOS  S2", "Sample2", null, "strain:Tgins:GFP zebrafish on an AB wildtype background|age:72 hpf|dev stage:protruding mouth stage|collection date:2023 01 03|geo loc name:USA: Massachusetts|sex:NA|tissue:whole body cells|treatment:PFOS 16 uM|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "PFOS", "PFOS", "PFOS", "PFOS  S2  scRNAseq", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP526812", null, null, "G194-S2-PFOS_S2_L001_R1_001.fastq.gz G194-S2-PFOS_S2_L001_R2_001.fastq.gz G194-S2-PFOS_S2_L002_R1_001.fastq.gz G194-S2-PFOS_S2_L002_R2_001.fastq.gz G194-S2-PFOS_S2_L003_R1_001.fastq.gz G194-S2-PFOS_S2_L003_R2_001.fastq.gz G194-S2-PFOS_S2_L004_R1_001.fastq.gz G194-S2-PFOS_S2_L004_R2_001.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 21751958340.0, 184338630.0, "G194 S2 PFOS S2 L001 R1 001.fastq.gz", "0:28 1:90", "A:6239773453;C:4634671870;G:5196638658;T:5672561386;N:8312973", 28, 90, null, null, 6239773453, 4634671870, 5196638658, 5672561386, 8312973, "SRX25733949", "SRS22373737", "SRA1949185", "University of Massachusetts Amherst|Environmental Health Sciences", "University of Massachusetts Amherst", 2, 0.01021, 0.92344, 0.00451, 0.22962, 0.99328, 0.79847, 0.28896, 0.51751, 28, 90, "T", "B", "sc-like readlen", "illumina", "nextseq", "unknown", "random_priming", "unknown", "sc", "single_cell_generic", "generic-scrnaseq-only", null, "United States", "2024-08-16", "Larval", "Larval", "Trunk", "Surface Structure"], [33616, "SRR30272851", "SRX25733948", "SRS22373736", "SRP526812", "PRJNA1148907", "Single cell RNA sequencing to uncover tissue specific transcriptomic changes induced by perfluorooctanesulfonic acid PFOS in larval zebrafish Danio rerio", "PRJNA1148907", "Other", "The aim is to to apply single cell RNA sequencing of zebrafish larvae to identify novel tissue specific mechanisms and processes following embryonic exposure to perfluorooctanesulfonic acid PFOS", null, "pubmed:39947082", null, "DMSO  S1", "Sample1", null, "strain:Tgins:GFP zebrafish on an AB wildtype background|age:72 hpf|dev stage:protruding mouth stage|collection date:2023 01 03|geo loc name:USA: Massachusetts|sex:NA|tissue:whole body cells|treatment:DMSO 0.01%|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "DMSO", "DMSO", "DMSO", "DMSO  S1  scRNAseq", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP526812", null, null, "G194-S1-DMSO_S1_L001_R1_001.fastq.gz G194-S1-DMSO_S1_L001_R2_001.fastq.gz G194-S1-DMSO_S1_L002_R1_001.fastq.gz G194-S1-DMSO_S1_L002_R2_001.fastq.gz G194-S1-DMSO_S1_L003_R1_001.fastq.gz G194-S1-DMSO_S1_L003_R2_001.fastq.gz G194-S1-DMSO_S1_L004_R1_001.fastq.gz G194-S1-DMSO_S1_L004_R2_001.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 21636838838.0, 183363041.0, "G194 S1 DMSO S1 L001 R1 001.fastq.gz", "0:28 1:90", "A:6175214014;C:4647929260;G:5248646646;T:5556827078;N:8221840", 28, 90, null, null, 6175214014, 4647929260, 5248646646, 5556827078, 8221840, "SRX25733948", "SRS22373736", "SRA1949185", "University of Massachusetts Amherst|Environmental Health Sciences", "University of Massachusetts Amherst", 2, 0.01048, 0.92488, 0.00455, 0.20966, 0.99358, 0.81464, 0.28056, 0.57876, 28, 90, "T", "B", "sc-like readlen", "illumina", "nextseq", "unknown", "random_priming", "unknown", "sc", "single_cell_generic", "generic-scrnaseq-only", null, "United States", "2024-08-16", "Larval", "Larval", "Trunk", "Surface Structure"], [34605, "SRR32129951", "SRX27476252", "SRS23900301", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "LAP3", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 9|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "LAP3", "LAP3", "mRNA seq of Danio rerio  relication 3 of LAP", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "SLAP3.R1.raw.fastq.gz SLAP3.R2.raw.fastq.gz", "fastq fastq", 7183254522.0, 23785611.0, "SLAP3.R1.raw.fastq.gz", "0:151 1:151", "A:1882819072;C:1681966830;G:1744461184;T:1873823146;N:184290", 151, 151, null, null, 1882819072, 1681966830, 1744461184, 1873823146, 184290, "SRX27476252", "SRS23900301", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34606, "SRR32129952", "SRX27476251", "SRS23900300", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "LAP2", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 8|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "LAP2", "LAP2", "mRNA seq of Danio rerio  relication 2 of LAP", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "SLAP2.R1.raw.fastq.gz SLAP2.R2.raw.fastq.gz", "fastq fastq", 7139867692.0, 23641946.0, "SLAP2.R1.raw.fastq.gz", "0:151 1:151", "A:1904886971;C:1644487548;G:1698548524;T:1891760900;N:183749", 151, 151, null, null, 1904886971, 1644487548, 1698548524, 1891760900, 183749, "SRX27476251", "SRS23900300", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34607, "SRR32129953", "SRX27476250", "SRS23900299", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "LAP1", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 7|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "LAP1", "LAP1", "mRNA seq of Danio rerio  relication 1 of LAP", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "SLAP1.R1.raw.fastq.gz SLAP1.R2.raw.fastq.gz", "fastq fastq", 7645904026.0, 25317563.0, "SLAP1.R1.raw.fastq.gz", "0:151 1:151", "A:2049503194;C:1744624826;G:1812871140;T:2038707095;N:197771", 151, 151, null, null, 2049503194, 1744624826, 1812871140, 2038707095, 197771, "SRX27476250", "SRS23900299", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34608, "SRR32129954", "SRX27476249", "SRS23900298", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "TWP3", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "TWP3", "TWP3", "mRNA seq of Danio rerio  relication 3 of TWP", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "STWP3.R1.raw.fastq.gz STWP3.R2.raw.fastq.gz", "fastq fastq", 8096479268.0, 26809534.0, "STWP3.R1.raw.fastq.gz", "0:151 1:151", "A:2110740470;C:1903775486;G:1969223430;T:2112536317;N:203565", 151, 151, null, null, 2110740470, 1903775486, 1969223430, 2112536317, 203565, "SRX27476249", "SRS23900298", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34609, "SRR32129955", "SRX27476248", "SRS23900297", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "TWP2", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "TWP2", "TWP2", "mRNA seq of Danio rerio  relication 2 of TWP", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "STWP2.R1.raw.fastq.gz STWP2.R2.raw.fastq.gz", "fastq fastq", 6881487968.0, 22786384.0, "STWP2.R1.raw.fastq.gz", "0:151 1:151", "A:1769568137;C:1637920699;G:1700276394;T:1773546973;N:175765", 151, 151, null, null, 1769568137, 1637920699, 1700276394, 1773546973, 175765, "SRX27476248", "SRS23900297", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34610, "SRR32129956", "SRX27476247", "SRS23900296", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "TWP1", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "TWP1", "TWP1", "mRNA seq of Danio rerio  relication 1 of TWP", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "STWP1.R1.raw.fastq.gz STWP1.R2.raw.fastq.gz", "fastq fastq", 8138908456.0, 26950028.0, "STWP1.R1.raw.fastq.gz", "0:151 1:151", "A:2098817113;C:1934858897;G:2002571746;T:2102461754;N:198946", 151, 151, null, null, 2098817113, 1934858897, 2002571746, 2102461754, 198946, "SRX27476247", "SRS23900296", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34611, "SRR32129957", "SRX27476246", "SRS23900295", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "CONTROL3", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "CONTROL3", "CONTROL3", "mRNA seq of Danio rerio  relication 3 of CONTROL", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "CONTROL3.R1.raw.fastq.gz CONTROL3.R2.raw.fastq.gz", "fastq fastq", 7576728510.0, 25088505.0, "CONTROL3.R1.raw.fastq.gz", "0:151 1:151", "A:1944933324;C:1805382406;G:1877636209;T:1948585527;N:191044", 151, 151, null, null, 1944933324, 1805382406, 1877636209, 1948585527, 191044, "SRX27476246", "SRS23900295", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34612, "SRR32129958", "SRX27476245", "SRS23900294", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "CONTROL2", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "CONTROL2", "CONTROL2", "mRNA seq of Danio rerio  relication 2 of CONTROL", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "CONTROL2.R1.raw.fastq.gz CONTROL2.R2.raw.fastq.gz", "fastq fastq", 8261380328.0, 27355564.0, "CONTROL2.R1.raw.fastq.gz", "0:151 1:151", "A:2215199676;C:1884149053;G:1947224290;T:2214596047;N:211262", 151, 151, null, null, 2215199676, 1884149053, 1947224290, 2214596047, 211262, "SRX27476245", "SRS23900294", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [34613, "SRR32129959", "SRX27476244", "SRS23900293", "SRP559953", "PRJNA1215813", "Comparative Toxicological Effects of Tire Wear and Latex Particle Leachates in Zebrafish Embryos: Focus on Oxidative Stress and Ferroptosis", "PRJNA1215813", "Other", "Microrubber  a subset of microplastics  has emerged as a significant environmental concern due to its persistence  bioaccumulation  and potential toxicity in aquatic ecosystems. This study investigates the toxicological effects of leachates derived from tire wear particles TWP and latex particles LAP on zebrafish embryos  focusing on physiological  oxidative stress  and transcriptomic responses. LAP leachate exhibited significantly higher toxicity than TWP  characterized by increased mortality  delayed hatching  reduced spontaneous movement  suppressed heart rate  and severe morphological malformations. Chemical analysis identified elevated levels of heavy metals and biologically active organic compounds  with higher zinc concentrations and benzothiazole derivatives in LAP leachate contributing to its greater toxicity. Oxidative stress markers revealed elevated catalase CAT and malondialdehyde MDA levels in both groups  but LAP exposure significantly reduced glutathione S transferase GST activity  indicating compromised detoxification capacity. Transcriptomic analysis identified ferroptosis as a central pathway mediating toxicity in both leachates. LAP exposure was associated with the upregulation of mt2 and fthl31 and the downregulation of slc40a1  suggesting disrupted iron metabolism and exacerbated oxidative damage. In contrast  TWP exposure triggered adaptive responses  including the upregulation of detoxification related genes such as cyp1a and gstt1b. These findings elucidate distinct toxicity mechanisms between TWP and LAP leachates and underscore the need for enhanced environmental monitoring and regulatory strategies to mitigate their ecological impacts.", null, null, null, null, "CONTROL1", null, "breed:AB|age:5 days|collection date:2024 05 26|geo loc name:Not collected|sex:Missing|tissue:Whole body|Replicate:Replicate = biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: zebrafish embryos", "CONTROL1", "CONTROL1", "mRNA seq of Danio rerio  relication 1 of CONTROL", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP559953", null, null, "CONTROL1.R1.raw.fastq.gz CONTROL1.R2.raw.fastq.gz", "fastq fastq", 7297086174.0, 24162537.0, "CONTROL1.R1.raw.fastq.gz", "0:151 1:151", "A:1869599378;C:1745386867;G:1807178668;T:1874732590;N:188671", 151, 151, null, null, 1869599378, 1745386867, 1807178668, 1874732590, 188671, "SRX27476244", "SRS23900293", "SRA2060932", "Qingdao University of Science and Technology|College of Marine Science and biological engineeri", "Qingdao University of Science and Technology", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2025-01-26", "Larval", "Larval", "Trunk", "Surface Structure"], [36223, "SRR33596639", "SRX28826240", "SRS25059183", "SRP585802", "PRJNA1263632", "transcriptome analysis of cu693494.2 ORF3 mutant", "PRJNA1263632", "Other", "The 3 dpf cu693494.2 ORF3 /  and WT larvae were dark treated 1day  and the zebrafish samples were collected at CT4/100 hpf  each with duplicate samples.", null, null, null, null, "cu ORF3 CT4 2", null, "strain:AB|age:3 dpf|dev stage:100 hpf|collection date:2024 10 30|geo loc name:China:Suzhu|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: whole body", "treatment2", "treatment2", "RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP585802", null, null, "cu-orf3-ct4-2_L1_1.fq.gz cu-orf3-ct4-2_L1_2.fq.gz", "fastq fastq", 6171131100.0, 20570437.0, "cu orf3 ct4 2 L1 1.fq.gz", "0:150 1:150", "A:1712348536;C:1373082573;G:1411350014;T:1674292589;N:57388", 150, 150, null, null, 1712348536, 1373082573, 1411350014, 1674292589, 57388, "SRX28826240", "SRS25059183", "SRA2130944", "Soochow University|Center for Circadian Clocks", "Soochow University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2025-05-16", "Larval", "Larval", "Trunk", "Surface Structure"], [36224, "SRR33596640", "SRX28826239", "SRS25059182", "SRP585802", "PRJNA1263632", "transcriptome analysis of cu693494.2 ORF3 mutant", "PRJNA1263632", "Other", "The 3 dpf cu693494.2 ORF3 /  and WT larvae were dark treated 1day  and the zebrafish samples were collected at CT4/100 hpf  each with duplicate samples.", null, null, null, null, "cu ORF3 CT4 1", null, "strain:AB|age:3 dpf|dev stage:100 hpf|collection date:2024 10 29|geo loc name:China:Suzhu|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: whole body", "treatment1", "treatment1", "RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP585802", null, null, "cu-orf3-ct4-1_L1_1.fq.gz cu-orf3-ct4-1_L1_2.fq.gz", "fastq fastq", 5416142700.0, 18053809.0, "cu orf3 ct4 1 L1 1.fq.gz", "0:150 1:150", "A:1506288932;C:1201904939;G:1238064656;T:1469832889;N:51284", 150, 150, null, null, 1506288932, 1201904939, 1238064656, 1469832889, 51284, "SRX28826239", "SRS25059182", "SRA2130944", "Soochow University|Center for Circadian Clocks", "Soochow University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2025-05-16", "Larval", "Larval", "Trunk", "Surface Structure"], [36225, "SRR33596641", "SRX28826238", "SRS25059181", "SRP585802", "PRJNA1263632", "transcriptome analysis of cu693494.2 ORF3 mutant", "PRJNA1263632", "Other", "The 3 dpf cu693494.2 ORF3 /  and WT larvae were dark treated 1day  and the zebrafish samples were collected at CT4/100 hpf  each with duplicate samples.", null, null, null, null, "WT CT4 2", null, "strain:AB|age:3 dpf|dev stage:100 hpf|collection date:2024 10 28|geo loc name:China:Suzhu|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: whole body", "control2", "control2", "RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP585802", null, null, "wt-ct4-2_L1_1.fq.gz wt-ct4-2_L1_2.fq.gz", "fastq fastq", 6965839200.0, 23219464.0, "wt ct4 2 L1 1.fq.gz", "0:150 1:150", "A:1904316669;C:1579337292;G:1621119016;T:1860980311;N:85912", 150, 150, null, null, 1904316669, 1579337292, 1621119016, 1860980311, 85912, "SRX28826238", "SRS25059181", "SRA2130944", "Soochow University|Center for Circadian Clocks", "Soochow University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2025-05-16", "Larval", "Larval", "Trunk", "Surface Structure"], [36226, "SRR33596642", "SRX28826237", "SRS25059180", "SRP585802", "PRJNA1263632", "transcriptome analysis of cu693494.2 ORF3 mutant", "PRJNA1263632", "Other", "The 3 dpf cu693494.2 ORF3 /  and WT larvae were dark treated 1day  and the zebrafish samples were collected at CT4/100 hpf  each with duplicate samples.", null, null, null, null, "WT CT4 1", null, "strain:AB|age:3 dpf|dev stage:100 hpf|collection date:2024 10 27|geo loc name:China:Suzhu|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: whole body", "control1", "control1", "RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP585802", null, null, "wt-ct4-1_L1_1.fq.gz wt-ct4-1_L1_2.fq.gz", "fastq fastq", 5399973600.0, 17999912.0, "wt ct4 1 L1 1.fq.gz", "0:150 1:150", "A:1487700688;C:1212118655;G:1244330905;T:1455775411;N:47941", 150, 150, null, null, 1487700688, 1212118655, 1244330905, 1455775411, 47941, "SRX28826237", "SRS25059180", "SRA2130944", "Soochow University|Center for Circadian Clocks", "Soochow University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2025-05-16", "Larval", "Larval", "Trunk", "Surface Structure"], [55219, "SRR10199007", "SRX6919150", "SRS5450113", "SRP223586", "PRJNA573544", "Danio rerio strain:wild type AB Raw sequence reads", "PRJNA573544", "Whole Genome Sequencing", "This study was designed to investigate the expression profiling when the target gene ZfXH was silenced. Two groups of zebrafishes  ZfXH MO and Control  MO  were set. zebrafishes were injected with ZfXH MO and Control  MO at one cell stage with 4ng MO  respectively. Smaples were collected 3dpf and RNA was isolated. RNA was sequenced successfully.", null, null, null, "Transcriptome isolated from Danio rerio", "ZfXH silenced Danio rerio", null, "strain:wild type AB|age:3 dpf male and female|tissue:whole body of fish|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult tissue", "ZfXH MO", "ZfXH MO", "RNA seq", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP223586", null, null, "ZfXH_MO_S21_L001_R1_001.fastq.gz ZfXH_MO_S21_L001_R2_001.fastq.gz", "fastq fastq", 10018997678.0, 33175489.0, "ZfXH MO S21 L001 R1 001.fastq.gz", "0:151 1:151", "A:2631827404;C:2366264563;G:2402993536;T:2617896610;N:15565", 151, 151, null, null, 2631827404, 2366264563, 2402993536, 2617896610, 15565, "SRX6919150", "SRS5450113", "SRA969623", "Institute of Fishery Sciences|Genetic Breeding and Healthy Aquaculture", "Institute of Fishery Sciences", 2, 0.95353, 0.95357, 0.09504, 0.09477, 0.67414, 0.67452, 0.4715, 0.47446, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2019-09-28", "Larval", "Larval", "Trunk", "Surface Structure"], [55220, "SRR10199008", "SRX6919149", "SRS5450113", "SRP223586", "PRJNA573544", "Danio rerio strain:wild type AB Raw sequence reads", "PRJNA573544", "Whole Genome Sequencing", "This study was designed to investigate the expression profiling when the target gene ZfXH was silenced. Two groups of zebrafishes  ZfXH MO and Control  MO  were set. zebrafishes were injected with ZfXH MO and Control  MO at one cell stage with 4ng MO  respectively. Smaples were collected 3dpf and RNA was isolated. RNA was sequenced successfully.", null, null, null, "Transcriptome isolated from Danio rerio", "ZfXH silenced Danio rerio", null, "strain:wild type AB|age:3 dpf male and female|tissue:whole body of fish|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult tissue", "control MO", "control MO", "RNA seq", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP223586", null, null, "control_MO_S20_L001_R1_001.fastq.gz control_MO_S20_L001_R2_001.fastq.gz", "fastq fastq", 8415899232.0, 27867216.0, "control MO S20 L001 R1 001.fastq.gz", "0:151 1:151", "A:2207602868;C:1993098209;G:2018109352;T:2197075569;N:13234", 151, 151, null, null, 2207602868, 1993098209, 2018109352, 2197075569, 13234, "SRX6919149", "SRS5450113", "SRA969623", "Institute of Fishery Sciences|Genetic Breeding and Healthy Aquaculture", "Institute of Fishery Sciences", 2, 0.95324, 0.953, 0.0989, 0.0986, 0.66673, 0.66683, 0.47041, 0.469, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2019-09-28", "Larval", "Larval", "Trunk", "Surface Structure"], [60116, "SRR13716596", "SRX10105179", "SRS8262182", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of  50 \u03bcM SB2035801  replicate #3", "10C SB 3", "10C SB 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 50 \u03bcM SB203580|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "10C SB#3", "10C SB#3", "10C SB#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-SB-3_L3_1.fq.gz 10C-SB-3_L3_2.fq.gz a10C-SB-3_L1_1.fq.gz a10C-SB-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6689447700.0, 22298159.0, "10C SB 3 L3 1.fq.gz", "0:150 1:150", "A:1755473088;C:1585054126;G:1622628538;T:1726253854;N:38094", 150, 150, null, null, 1755473088, 1585054126, 1622628538, 1726253854, 38094, "SRX10105179", "SRS8262182", "SRA1196485", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92288, 0.92244, 0.08777, 0.08783, 0.67093, 0.67067, 0.47936, 0.47997, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-16", "Larval", "Larval", "Trunk", "Surface Structure"], [60117, "SRR13716597", "SRX10105178", "SRS8262180", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of  50 \u03bcM SB2035801  replicate #2", "10C SB 2", "10C SB 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 50 \u03bcM SB203580|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "10C SB#2", "10C SB#2", "10C SB#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-SB-2_L3_1.fq.gz 10C-SB-2_L3_2.fq.gz a10C-SB-2_L1_1.fq.gz a10C-SB-2_L1_2.fq.gz", "fastq fastq fastq fastq", 6613801200.0, 22046004.0, "10C SB 2 L3 1.fq.gz", "0:150 1:150", "A:1718273446;C:1585274785;G:1621112738;T:1689101559;N:38672", 150, 150, null, null, 1718273446, 1585274785, 1621112738, 1689101559, 38672, "SRX10105178", "SRS8262180", "SRA1196485", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92398, 0.9243, 0.08157, 0.08161, 0.67125, 0.67006, 0.48562, 0.4718, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-16", "Larval", "Larval", "Trunk", "Surface Structure"], [60118, "SRR13716598", "SRX10105177", "SRS8262181", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of  50 \u03bcM SB2035801  replicate #1", "10C SB 1", "10C SB 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 50 \u03bcM SB203580|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "10C SB#1", "10C SB#1", "10C SB#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-SB-1_L3_1.fq.gz 10C-SB-1_L3_2.fq.gz", "fastq fastq", 5996072400.0, 19986908.0, "10C SB 1 L3 1.fq.gz", "0:150 1:150", "A:1548441285;C:1446480691;G:1472562271;T:1528551525;N:36628", 150, 150, null, null, 1548441285, 1446480691, 1472562271, 1528551525, 36628, "SRX10105177", "SRS8262181", "SRA1196485", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92154, 0.92139, 0.07981, 0.07967, 0.66931, 0.66776, 0.48513, 0.48473, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-16", "Larval", "Larval", "Trunk", "Surface Structure"], [60119, "SRR13716310", "SRX10104893", "SRS8261917", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 5 \u03bcM PD0325901  replicate #3", "10C PD 3", "10C PD 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 5 \u03bcM PD0325901|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "10C PD#3", "10C PD#3", "10C PD#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-PD-3_L3_1.fq.gz 10C-PD-3_L3_2.fq.gz a10C-PD-3_L1_1.fq.gz a10C-PD-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6553566900.0, 21845223.0, "10C PD 3 L3 1.fq.gz", "0:150 1:150", "A:1711712888;C:1560862189;G:1598014292;T:1682939768;N:37763", 150, 150, null, null, 1711712888, 1560862189, 1598014292, 1682939768, 37763, "SRX10104893", "SRS8261917", "SRA1196464", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92319, 0.92324, 0.0836, 0.08355, 0.67306, 0.67249, 0.48209, 0.47844, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-15", "Larval", "Larval", "Trunk", "Surface Structure"], [60120, "SRR13716311", "SRX10104892", "SRS8261916", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 5 \u03bcM PD0325901  replicate #2", "10C PD 2", "10C PD 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 5 \u03bcM PD0325901|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "10C PD#2", "10C PD#2", "10C PD#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-PD-2_L3_1.fq.gz 10C-PD-2_L3_2.fq.gz a10C-PD-2_L1_1.fq.gz a10C-PD-2_L1_2.fq.gz", "fastq fastq fastq fastq", 6667400100.0, 22224667.0, "10C PD 2 L3 1.fq.gz", "0:150 1:150", "A:1751304072;C:1578216502;G:1613656813;T:1724183035;N:39678", 150, 150, null, null, 1751304072, 1578216502, 1613656813, 1724183035, 39678, "SRX10104892", "SRS8261916", "SRA1196464", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92135, 0.92072, 0.08989, 0.0899, 0.66807, 0.66722, 0.48187, 0.48732, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-15", "Larval", "Larval", "Trunk", "Surface Structure"], [60121, "SRR13716312", "SRX10104891", "SRS8261915", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 5 \u03bcM PD0325901  replicate #1", "10C PD 1", "10C PD 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 5 \u03bcM PD0325901|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "10C PD#1", "10C PD#1", "10C PD#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-PD-1_L3_1.fq.gz 10C-PD-1_L3_2.fq.gz", "fastq fastq", 6443217000.0, 21477390.0, "10C PD 1 L3 1.fq.gz", "0:150 1:150", "A:1696055700;C:1522403644;G:1555774829;T:1668939971;N:42856", 150, 150, null, null, 1696055700, 1522403644, 1555774829, 1668939971, 42856, "SRX10104891", "SRS8261915", "SRA1196464", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92085, 0.92219, 0.0928, 0.09333, 0.66405, 0.66235, 0.48345, 0.48362, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-15", "Larval", "Larval", "Trunk", "Surface Structure"], [60122, "SRR13708182", "SRX10097122", "SRS8254474", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 0.5 \u03bcM AS1842856  replicate #3", "10C AS 3", "10C AS 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 0.5 \u03bcM AS1842856|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#3", "10C AS#3", "10C AS#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-AS-3_L4_1.fq.gz 10C-AS-3_L4_2.fq.gz a10C-AS-3_L1_1.fq.gz a10C-AS-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6732036300.0, 22440121.0, "10C AS 3 L4 1.fq.gz", "0:150 1:150", "A:1784280791;C:1573905995;G:1615796221;T:1758043122;N:10171", 150, 150, null, null, 1784280791, 1573905995, 1615796221, 1758043122, 10171, "SRX10097122", "SRS8254474", "SRA1196187", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92104, 0.92236, 0.0898, 0.0901, 0.66979, 0.66961, 0.48787, 0.48861, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-14", "Larval", "Larval", "Trunk", "Surface Structure"], [60123, "SRR13708183", "SRX10097121", "SRS8254473", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 0.5 \u03bcM AS1842856  replicate #2", "10C AS 2", "10C AS 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 0.5 \u03bcM AS1842856|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#2", "10C AS#2", "10C AS#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-AS-2_L3_1.fq.gz 10C-AS-2_L3_2.fq.gz", "fastq fastq", 5996978400.0, 19989928.0, "10C AS 2 L3 1.fq.gz", "0:150 1:150", "A:1586465143;C:1405066884;G:1448159164;T:1557252287;N:34922", 150, 150, null, null, 1586465143, 1405066884, 1448159164, 1557252287, 34922, "SRX10097121", "SRS8254473", "SRA1196187", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.91787, 0.91834, 0.08889, 0.08892, 0.6692, 0.66898, 0.48573, 0.48749, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-14", "Larval", "Larval", "Trunk", "Surface Structure"], [60124, "SRR13708184", "SRX10097120", "SRS8254472", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 0.5 \u03bcM AS1842856  replicate #1", "10C AS 1", "10C AS 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 0.5 \u03bcM AS1842856|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#1", "10C AS#1", "10C AS#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-AS-1_L3_1.fq.gz 10C-AS-1_L3_2.fq.gz a10C-AS-1_L1_1.fq.gz a10C-AS-1_L1_2.fq.gz", "fastq fastq fastq fastq", 6569816400.0, 21899388.0, "10C AS 1 L3 1.fq.gz", "0:150 1:150", "A:1737515846;C:1540816249;G:1582569507;T:1708881397;N:33401", 150, 150, null, null, 1737515846, 1540816249, 1582569507, 1708881397, 33401, "SRX10097120", "SRS8254472", "SRA1196187", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.91936, 0.92032, 0.08712, 0.08707, 0.66849, 0.66697, 0.49092, 0.49151, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-14", "Larval", "Larval", "Trunk", "Surface Structure"], [60125, "SRR13707161", "SRX10096101", "SRS8253483", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 1/1000 DMSO  replicate #3", "10C DMSO 3", "10C DMSO 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 1/1000 DMSO|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#3", "10C DMSO#3", "10C DMSO#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-DMSO-3_L3_1.fq.gz 10C-DMSO-3_L3_2.fq.gz", "fastq fastq", 5904314400.0, 19681048.0, "10C DMSO 3 L3 1.fq.gz", "0:150 1:150", "A:1539151362;C:1409713024;G:1445164550;T:1510248421;N:37043", 150, 150, null, null, 1539151362, 1409713024, 1445164550, 1510248421, 37043, "SRX10096101", "SRS8253483", "SRA1196168", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93032, 0.93038, 0.08225, 0.08242, 0.67282, 0.67168, 0.47769, 0.48048, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-14", "Larval", "Larval", "Trunk", "Surface Structure"], [60126, "SRR13707162", "SRX10096100", "SRS8253482", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 1/1000 DMSO  replicate #2", "10C DMSO 2", "10C DMSO 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 1/1000 DMSO|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#2", "10C DMSO#2", "10C DMSO#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-DMSO-2_L3_1.fq.gz 10C-DMSO-2_L3_2.fq.gz", "fastq fastq", 6006327900.0, 20021093.0, "10C DMSO 2 L3 1.fq.gz", "0:150 1:150", "A:1569204011;C:1431943938;G:1467115626;T:1538025449;N:38876", 150, 150, null, null, 1569204011, 1431943938, 1467115626, 1538025449, 38876, "SRX10096100", "SRS8253482", "SRA1196168", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.92966, 0.93003, 0.08607, 0.08623, 0.66947, 0.66935, 0.47981, 0.47923, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-14", "Larval", "Larval", "Trunk", "Surface Structure"], [60127, "SRR13707163", "SRX10096099", "SRS8253481", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were exposed to 10oC for xxxh in the presence of 1/1000 DMSO  replicate #1", "10C DMSO 1", "10C DMSO 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae exposed to 10oC in the presence of 1/1000 DMSO|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#1", "10C DMSO#1", "10C DMSO#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "10C-DMSO-1_L3_1.fq.gz 10C-DMSO-1_L3_2.fq.gz", "fastq fastq", 6056499000.0, 20188330.0, "10C DMSO 1 L3 1.fq.gz", "0:150 1:150", "A:1537475715;C:1487268906;G:1523545020;T:1508171266;N:38093", 150, 150, null, null, 1537475715, 1487268906, 1523545020, 1508171266, 38093, "SRX10096099", "SRS8253481", "SRA1196168", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93554, 0.93577, 0.06971, 0.06986, 0.67308, 0.67129, 0.48422, 0.47976, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-14", "Larval", "Larval", "Trunk", "Surface Structure"], [60128, "SRR13706208", "SRX10095148", "SRS8252537", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 50 \u03bcM SB203580 for 12h at normal temperature  replicate #3", "28C SB 3", "28C SB 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 50 \u03bcM SB203580 at normal temperature|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#3", "28C SB#3", "28C SB#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-SB-3_L3_1.fq.gz 28C-SB-3_L3_2.fq.gz a28C-SB-3_L1_1.fq.gz a28C-SB-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6594180900.0, 21980603.0, "28C SB 3 L3 1.fq.gz", "0:150 1:150", "A:1689900125;C:1600654190;G:1651026430;T:1652552026;N:48129", 150, 150, null, null, 1689900125, 1600654190, 1651026430, 1652552026, 48129, "SRX10095148", "SRS8252537", "SRA1196134", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93294, 0.93276, 0.05921, 0.05915, 0.66543, 0.66492, 0.47486, 0.47492, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-13", "Larval", "Larval", "Trunk", "Surface Structure"], [60129, "SRR13706209", "SRX10095147", "SRS8252536", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 50 \u03bcM SB203580 for 12h at normal temperature  replicate #2", "28C SB 2", "28C SB 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 50 \u03bcM SB203580 at normal temperature|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#2", "28C SB#2", "28C SB#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-SB-2_L3_1.fq.gz 28C-SB-2_L3_2.fq.gz a28C-SB-2_L1_1.fq.gz a28C-SB-2_L1_2.fq.gz", "fastq fastq fastq fastq", 6503823300.0, 21679411.0, "28C SB 2 L3 1.fq.gz", "0:150 1:150", "A:1671366325;C:1574642308;G:1618319340;T:1639451188;N:44139", 150, 150, null, null, 1671366325, 1574642308, 1618319340, 1639451188, 44139, "SRX10095147", "SRS8252536", "SRA1196134", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.9316, 0.93174, 0.06054, 0.06095, 0.66192, 0.66253, 0.48331, 0.48394, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-13", "Larval", "Larval", "Trunk", "Surface Structure"], [60130, "SRR13706210", "SRX10095146", "SRS8252535", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 50 \u03bcM SB203580 for 12h at normal temperature  replicate #1", "28C SB 1", "28C SB 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 50 \u03bcM SB203580 at normal temperature|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#1", "28C SB#1", "28C SB#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-SB-1_L3_1.fq.gz 28C-SB-1_L3_2.fq.gz a28C-SB-1_L1_1.fq.gz a28C-SB-1_L1_2.fq.gz", "fastq fastq fastq fastq", 6433728600.0, 21445762.0, "28C SB 1 L3 1.fq.gz", "0:150 1:150", "A:1644012802;C:1567311809;G:1617097059;T:1605256226;N:50704", 150, 150, null, null, 1644012802, 1567311809, 1617097059, 1605256226, 50704, "SRX10095146", "SRS8252535", "SRA1196134", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93588, 0.93579, 0.05578, 0.05595, 0.66738, 0.66691, 0.4704, 0.47338, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-13", "Larval", "Larval", "Trunk", "Surface Structure"], [60131, "SRR13705396", "SRX10094348", "SRS8251794", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 5 \u03bcM PD0325901 for 12h at normal temperature  replicate #3", "28C PD 3", "28C PD 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 5 \u03bcM PD0325901 at normal temperature|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#3", "28C PD#3", "28C PD#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-PD-3_L3_1.fq.gz 28C-PD-3_L3_2.fq.gz a28C-PD-3_L1_1.fq.gz a28C-PD-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6316603200.0, 21055344.0, "28C PD 3 L3 1.fq.gz", "0:150 1:150", "A:1623963129;C:1530460527;G:1575145519;T:1586988238;N:45787", 150, 150, null, null, 1623963129, 1530460527, 1575145519, 1586988238, 45787, "SRX10094348", "SRS8251794", "SRA1195973", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93748, 0.93754, 0.06126, 0.06113, 0.66255, 0.6621, 0.46522, 0.46708, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-13", "Larval", "Larval", "Trunk", "Surface Structure"], [60132, "SRR13705397", "SRX10094347", "SRS8251793", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 5 \u03bcM PD0325901 for 12h at normal temperature  replicate #2", "28C PD 2", "28C PD 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 5 \u03bcM PD0325901 at normal temperature|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#2", "28C PD#2", "28C PD#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-PD-2_L3_1.fq.gz 28C-PD-2_L3_2.fq.gz a28C-PD-2_L1_1.fq.gz a28C-PD-2_L1_2.fq.gz", "fastq fastq fastq fastq", 6415971300.0, 21386571.0, "28C PD 2 L3 1.fq.gz", "0:150 1:150", "A:1653125594;C:1551175406;G:1593234041;T:1618387048;N:49211", 150, 150, null, null, 1653125594, 1551175406, 1593234041, 1618387048, 49211, "SRX10094347", "SRS8251793", "SRA1195973", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93614, 0.93566, 0.06336, 0.06349, 0.65896, 0.65847, 0.47393, 0.47942, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-13", "Larval", "Larval", "Trunk", "Surface Structure"], [60133, "SRR13705398", "SRX10094346", "SRS8251792", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 5 \u03bcM PD0325901 for 12h at normal temperature  replicate #1", "28C PD 1", "28C PD 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 5 \u03bcM PD0325901 at normal temperature|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#1", "28C PD#1", "28C PD#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-PD-1_L3_1.fq.gz 28C-PD-1_L3_2.fq.gz a28C-PD-1_L1_1.fq.gz a28C-PD-1_L1_2.fq.gz", "fastq fastq fastq fastq", 6316612500.0, 21055375.0, "28C PD 1 L3 1.fq.gz", "0:150 1:150", "A:1625594742;C:1529992924;G:1568064215;T:1592911190;N:49429", 150, 150, null, null, 1625594742, 1529992924, 1568064215, 1592911190, 49429, "SRX10094346", "SRS8251792", "SRA1195973", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93445, 0.93499, 0.06232, 0.06241, 0.65926, 0.6594, 0.47641, 0.47414, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-13", "Larval", "Larval", "Trunk", "Surface Structure"], [60134, "SRR13674719", "SRX10064162", "SRS8226292", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 0.5 \u03bcM AS1842856 for 12h at normal temperature  replicate #3", "28C AS 3", "28C AS 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 0.5 \u03bcM AS1842856 at normal temperature|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#3", "28C AS#3", "28C AS#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "a28C-AS-3_L1_2.fq.gz a28C-AS-3_L1_1.fq.gz 28C-AS-3_L3_2.fq.gz 28C-AS-3_L3_1.fq.gz", "fastq fastq fastq fastq", 6808865100.0, 22696217.0, "28C AS 3 L3 1.fq.gz", "0:150 1:150", "A:1771098634;C:1630525561;G:1661862192;T:1745324102;N:54611", 150, 150, null, null, 1771098634, 1630525561, 1661862192, 1745324102, 54611, "SRX10064162", "SRS8226292", "SRA1194325", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93377, 0.934, 0.06494, 0.06526, 0.66705, 0.6664, 0.48432, 0.48396, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60135, "SRR13674720", "SRX10064161", "SRS8226291", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 0.5 \u03bcM AS1842856 for 12h at normal temperature  replicate #2", "28C AS 2", "28C AS 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 0.5 \u03bcM AS1842856 at normal temperature|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#2", "28C AS#2", "28C AS#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "a28C-AS-2_L1_2.fq.gz a28C-AS-2_L1_1.fq.gz 28C-AS-2_L3_2.fq.gz 28C-AS-2_L3_1.fq.gz", "fastq fastq fastq fastq", 6814335000.0, 22714450.0, "28C AS 2 L3 1.fq.gz", "0:150 1:150", "A:1761654071;C:1642988616;G:1682689927;T:1726945565;N:56821", 150, 150, null, null, 1761654071, 1642988616, 1682689927, 1726945565, 56821, "SRX10064161", "SRS8226291", "SRA1194325", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93541, 0.93539, 0.06484, 0.06484, 0.66661, 0.66624, 0.48349, 0.48748, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60136, "SRR13674721", "SRX10064160", "SRS8226290", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were treated with 0.5 \u03bcM AS1842856 for 12h at normal temperature  replicate #1", "28C AS 1", "28C AS 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Zebrafish larvae treated with 0.5 \u03bcM AS1842856 at normal temperature|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C AS#1", "28C AS#1", "28C AS#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-AS-1_L3_1.fq.gz 28C-AS-1_L3_2.fq.gz a28C-AS-1_L1_1.fq.gz a28C-AS-1_L1_2.fq.gz", "fastq fastq fastq fastq", 6824750400.0, 22749168.0, "28C AS 1 L3 1.fq.gz", "0:150 1:150", "A:1770677413;C:1638137834;G:1678636890;T:1737243815;N:54448", 150, 150, null, null, 1770677413, 1638137834, 1678636890, 1737243815, 54448, "SRX10064160", "SRS8226290", "SRA1194325", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93454, 0.93398, 0.06331, 0.06325, 0.66578, 0.66523, 0.49519, 0.4905, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60137, "SRR13674523", "SRX10063966", "SRS8226108", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were maintained at 28oC for 12h in the presence of 1/1000 DMSO  replicate #3", "28C DMSO 3", "28C DMSO 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Vehicle control maintained at normal temperature|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C DMSO#3", "28C DMSO#3", "28C DMSO#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-DMSO-3_L3_1.fq.gz 28C-DMSO-3_L3_2.fq.gz a28C-DMSO-3_L1_1.fq.gz a28C-DMSO-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6271525200.0, 20905084.0, "28C DMSO 3 L3 1.fq.gz", "0:150 1:150", "A:1611660004;C:1518014092;G:1561398402;T:1580403620;N:49082", 150, 150, null, null, 1611660004, 1518014092, 1561398402, 1580403620, 49082, "SRX10063966", "SRS8226108", "SRA1194314", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93493, 0.9345, 0.05642, 0.05649, 0.66184, 0.66113, 0.48122, 0.48274, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60138, "SRR13674524", "SRX10063965", "SRS8226107", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were maintained at 28oC for 12h in the presence of 1/1000 DMSO  replicate #2", "28C DMSO 2", "28C DMSO 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Vehicle control maintained at normal temperature|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C DMSO#2", "28C DMSO#2", "28C DMSO#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-DMSO-2_L3_1.fq.gz 28C-DMSO-2_L3_2.fq.gz a28C-DMSO-2_L1_1.fq.gz a28C-DMSO-2_L1_2.fq.gz", "fastq fastq fastq fastq", 6586296900.0, 21954323.0, "28C DMSO 2 L3 1.fq.gz", "0:150 1:150", "A:1694478032;C:1592807476;G:1640193640;T:1658780401;N:37351", 150, 150, null, null, 1694478032, 1592807476, 1640193640, 1658780401, 37351, "SRX10063965", "SRS8226107", "SRA1194314", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93432, 0.9342, 0.05657, 0.05627, 0.66194, 0.66093, 0.48074, 0.47814, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60139, "SRR13674525", "SRX10063964", "SRS8226106", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "The larvae at 96hpf were maintained at 28oC for 12h in the presence of 1/1000 DMSO  replicate #1", "28C DMSO 1", "28C DMSO 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Vehicle control maintained at normal temperature|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "28C DMSO#1", "28C DMSO#1", "28C DMSO#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "28C-DMSO-1_L3_1.fq.gz 28C-DMSO-1_L3_2.fq.gz", "fastq fastq", 5969692800.0, 19898976.0, "28C DMSO 1 L3 1.fq.gz", "0:150 1:150", "A:1502645256;C:1475802063;G:1526815454;T:1464391541;N:38486", 150, 150, null, null, 1502645256, 1475802063, 1526815454, 1464391541, 38486, "SRX10063964", "SRS8226106", "SRA1194314", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93979, 0.94082, 0.0485, 0.04881, 0.66854, 0.66695, 0.47722, 0.47801, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60140, "SRR13673980", "SRX10063423", "SRS8225646", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Wild type larvae at 97 hpf  replicate #3", "96hpf 3", "96hpf 3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Wild type zebrafish larvae at 98hpf|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "96hpf#3", "96hpf#3", "96hpf#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "96hpf-3_L1_1.fq.gz 96hpf-3_L1_2.fq.gz a96hpf-3_L1_1.fq.gz a96hpf-3_L1_2.fq.gz", "fastq fastq fastq fastq", 6812021700.0, 22706739.0, "96hpf 3 L1 1.fq.gz", "0:150 1:150", "A:1769209232;C:1632156904;G:1670117160;T:1740527062;N:11342", 150, 150, null, null, 1769209232, 1632156904, 1670117160, 1740527062, 11342, "SRX10063423", "SRS8225646", "SRA1194287", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93082, 0.93281, 0.06403, 0.06382, 0.65983, 0.65977, 0.4805, 0.48038, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60141, "SRR13673981", "SRX10063422", "SRS8225645", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Wild type larvae at 97 hpf  replicate #2", "96hpf 2", "96hpf 2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Wild type zebrafish larvae at 97hpf|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "96hpf#2", "96hpf#2", "96hpf#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "96hpf-2_L3_1.fq.gz 96hpf-2_L3_2.fq.gz a96hpf-2_L1_1.fq.gz a96hpf-2_L1_2.fq.gz", "fastq fastq fastq fastq", 6754691700.0, 22515639.0, "96hpf 2 L3 1.fq.gz", "0:150 1:150", "A:1745293298;C:1627457133;G:1675487910;T:1706401036;N:52323", 150, 150, null, null, 1745293298, 1627457133, 1675487910, 1706401036, 52323, "SRX10063422", "SRS8225645", "SRA1194287", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93414, 0.93476, 0.05871, 0.05862, 0.66068, 0.65983, 0.48441, 0.47805, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60142, "SRR13673982", "SRX10063421", "SRS8225644", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Wild type larvae at 97 hpf  replicate #1", "96hpf 1", "96hpf 1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:Wild type zebrafish larvae at 96hpf|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "96hpf#1", "96hpf#1", "96hpf#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "96hpf-1_L3_1.fq.gz 96hpf-1_L3_2.fq.gz a96hpf-1_L1_1.fq.gz a96hpf-1_L1_2.fq.gz", "fastq fastq fastq fastq", 6277755900.0, 20925853.0, "96hpf 1 L3 1.fq.gz", "0:150 1:150", "A:1629739306;C:1504852773;G:1548656411;T:1594457255;N:50155", 150, 150, null, null, 1629739306, 1504852773, 1548656411, 1594457255, 50155, "SRX10063421", "SRS8225644", "SRA1194287", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.93537, 0.93562, 0.06431, 0.06474, 0.65553, 0.65547, 0.47983, 0.46402, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-02-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60143, "SRR12201939", "SRX8712806", "SRS6988633", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 24h recovery at normal temperature  replicate #2", "re 24h#2", "re 24h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 24h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 24h#2", "re 24h#2", "re 24h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T114_good_1.fq.gz Zebrafish_N082-01-T114_good_2.fq.gz", "fastq fastq", 8951725974.0, 30043805.0, "Zebrafish N082 01 T114 good 1.fq.gz", "0:148.98 1:148.98", "A:2286271179;C:2194588496;G:2204671632;T:2266185827;N:8840", 148, 148, null, null, 2286271179, 2194588496, 2204671632, 2266185827, 8840, "SRX8712806", "SRS6988633", "SRA1097872", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94891, 0.95075, 0.0598, 0.06016, 0.65752, 0.65794, 0.46576, 0.46511, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-12", "Larval", "Larval", "Trunk", "Surface Structure"], [60144, "SRR12201940", "SRX8712805", "SRS6988632", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 24h recovery at normal temperature  replicate #1", "re 24h#1", "re 24h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 24h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 24h#1", "re 24h#1", "re 24h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T113_good_1.fq.gz Zebrafish_N082-01-T113_good_2.fq.gz", "fastq fastq", 7958555272.0, 26704073.0, "Zebrafish N082 01 T113 good 1.fq.gz", "0:149.01 1:149.01", "A:2023637490;C:1960455575;G:1968384676;T:2006069808;N:7723", 149, 149, null, null, 2023637490, 1960455575, 1968384676, 2006069808, 7723, "SRX8712805", "SRS6988632", "SRA1097872", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94834, 0.95018, 0.05788, 0.05807, 0.66151, 0.66103, 0.46366, 0.46419, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-12", "Larval", "Larval", "Trunk", "Surface Structure"], [60145, "SRR12201941", "SRX8712804", "SRS6988631", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 24h recovery at normal temperature  replicate #3", "re 24h#3", "re 24h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 24h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 24h#3", "re 24h#3", "re 24h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T115_good_1.fq.gz Zebrafish_N082-01-T115_good_2.fq.gz", "fastq fastq", 8670551476.0, 29052478.0, "Zebrafish N082 01 T115 good 1.fq.gz", "0:149.22 1:149.22", "A:2212292115;C:2127883525;G:2138942171;T:2191425359;N:8306", 149, 149, null, null, 2212292115, 2127883525, 2138942171, 2191425359, 8306, "SRX8712804", "SRS6988631", "SRA1097872", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94881, 0.95013, 0.06047, 0.06052, 0.65916, 0.65865, 0.46098, 0.46284, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-12", "Larval", "Larval", "Trunk", "Surface Structure"], [60146, "SRR12201912", "SRX8712779", "SRS6988606", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 12h recovery at normal temperature  replicate #2", "re 12h#2", "re 12h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 12h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 12h#2", "re 12h#2", "re 12h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T111_good_1.fq.gz Zebrafish_N082-01-T111_good_2.fq.gz", "fastq fastq", 8699622392.0, 29153677.0, "Zebrafish N082 01 T111 good 1.fq.gz", "0:149.20 1:149.20", "A:2219401729;C:2136842246;G:2144939919;T:2198430097;N:8401", 149, 149, null, null, 2219401729, 2136842246, 2144939919, 2198430097, 8401, "SRX8712779", "SRS6988606", "SRA1097867", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94835, 0.95109, 0.05974, 0.0604, 0.6546, 0.65421, 0.46714, 0.46221, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-12", "Larval", "Larval", "Trunk", "Surface Structure"], [60147, "SRR12201913", "SRX8712778", "SRS6988605", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 12h recovery at normal temperature  replicate #1", "re 12h#1", "re 12h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 12h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 12h#1", "re 12h#1", "re 12h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T110_good_1.fq.gz Zebrafish_N082-01-T110_good_2.fq.gz", "fastq fastq", 9659696198.0, 32399989.0, "Zebrafish N082 01 T110 good 1.fq.gz", "0:149.07 1:149.07", "A:2484585860;C:2352819432;G:2361786076;T:2460495280;N:9550", 149, 149, null, null, 2484585860, 2352819432, 2361786076, 2460495280, 9550, "SRX8712778", "SRS6988605", "SRA1097867", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94796, 0.94987, 0.06359, 0.06391, 0.65453, 0.65484, 0.46234, 0.46449, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-12", "Larval", "Larval", "Trunk", "Surface Structure"], [60148, "SRR12201914", "SRX8712777", "SRS6988604", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 12h recovery at normal temperature  replicate #3", "re 12h#3", "re 12h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 12h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 12h#3", "re 12h#3", "re 12h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T112_good_1.fq.gz Zebrafish_N082-01-T112_good_2.fq.gz", "fastq fastq", 9530465006.0, 31967666.0, "Zebrafish N082 01 T112 good 1.fq.gz", "0:149.06 1:149.06", "A:2430778988;C:2340273985;G:2350943720;T:2408458634;N:9679", 149, 149, null, null, 2430778988, 2340273985, 2350943720, 2408458634, 9679, "SRX8712777", "SRS6988604", "SRA1097867", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94825, 0.94934, 0.0598, 0.05972, 0.65758, 0.65703, 0.45921, 0.46577, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-12", "Larval", "Larval", "Trunk", "Surface Structure"], [60149, "SRR12201311", "SRX8712178", "SRS6988102", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 6h recovery at normal temperature  replicate #3", "re 6h#3", "re 6h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 6h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 6h#3", "re 6h#3", "re 6h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T109_good_1.fq.gz Zebrafish_N082-01-T109_good_2.fq.gz", "fastq fastq", 8656222216.0, 29119374.0, "Zebrafish N082 01 T109 good 1.fq.gz", "0:148.63 1:148.63", "A:2224288504;C:2107136529;G:2119597196;T:2205191367;N:8620", 148, 148, null, null, 2224288504, 2107136529, 2119597196, 2205191367, 8620, "SRX8712178", "SRS6988102", "SRA1097851", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94918, 0.9507, 0.06678, 0.06714, 0.65105, 0.65109, 0.46125, 0.46263, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-11", "Larval", "Larval", "Trunk", "Surface Structure"], [60150, "SRR12201312", "SRX8712177", "SRS6988101", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 6h recovery at normal temperature  replicate #2", "re 6h#2", "re 6h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 6h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 6h#2", "re 6h#2", "re 6h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T108_good_1.fq.gz Zebrafish_N082-01-T108_good_2.fq.gz", "fastq fastq", 9145523612.0, 30667280.0, "Zebrafish N082 01 T108 good 1.fq.gz", "0:149.11 1:149.11", "A:2318208147;C:2256664707;G:2271799033;T:2298842568;N:9157", 149, 149, null, null, 2318208147, 2256664707, 2271799033, 2298842568, 9157, "SRX8712177", "SRS6988101", "SRA1097851", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94948, 0.95136, 0.05787, 0.05778, 0.65529, 0.65486, 0.46308, 0.46219, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-11", "Larval", "Larval", "Trunk", "Surface Structure"], [60151, "SRR12201313", "SRX8712176", "SRS6988100", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 6h recovery at normal temperature  replicate #1", "re 6h#1", "re 6h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 6h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 6h#1", "re 6h#1", "re 6h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T107_good_1.fq.gz Zebrafish_N082-01-T107_good_2.fq.gz", "fastq fastq", 9926776130.0, 33299889.0, "Zebrafish N082 01 T107 good 1.fq.gz", "0:149.05 1:149.05", "A:2517844728;C:2449564536;G:2462487965;T:2496869115;N:9786", 149, 149, null, null, 2517844728, 2449564536, 2462487965, 2496869115, 9786, "SRX8712176", "SRS6988100", "SRA1097851", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.9487, 0.95018, 0.05888, 0.05881, 0.65646, 0.65593, 0.46185, 0.46088, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-11", "Larval", "Larval", "Trunk", "Surface Structure"], [60152, "SRR12199231", "SRX8710112", "SRS6986609", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 2h recovery at normal temperature  replicate #3", "re 2h#3", "re 2h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 2h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 2h#3", "re 2h#3", "re 2h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T106_good_1.fq.gz Zebrafish_N082-01-T106_good_2.fq.gz", "fastq fastq", 9253109430.0, 31027133.0, "Zebrafish N082 01 T106 good 1.fq.gz", "0:149.11 1:149.11", "A:2356214864;C:2275049635;G:2285941834;T:2335893825;N:9272", 149, 149, null, null, 2356214864, 2275049635, 2285941834, 2335893825, 9272, "SRX8710112", "SRS6986609", "SRA1097576", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.95103, 0.95264, 0.06133, 0.06212, 0.66413, 0.66448, 0.45692, 0.45955, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-11", "Larval", "Larval", "Trunk", "Surface Structure"], [60153, "SRR12199232", "SRX8710111", "SRS6986608", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 2h recovery at normal temperature  replicate #2", "re 2h#2", "re 2h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 2h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 2h#2", "re 2h#2", "re 2h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T105_good_1.fq.gz Zebrafish_N082-01-T105_good_2.fq.gz", "fastq fastq", 7648566586.0, 25649463.0, "Zebrafish N082 01 T105 good 1.fq.gz", "0:149.10 1:149.10", "A:1948929425;C:1879144940;G:1888918416;T:1931566315;N:7490", 149, 149, null, null, 1948929425, 1879144940, 1888918416, 1931566315, 7490, "SRX8710111", "SRS6986608", "SRA1097576", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.95035, 0.95278, 0.05867, 0.05916, 0.66555, 0.6644, 0.47121, 0.47186, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-11", "Larval", "Larval", "Trunk", "Surface Structure"], [60154, "SRR12199233", "SRX8710110", "SRS6986607", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 2h recovery at normal temperature  replicate #1", "re 2h#1", "re 2h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 2h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "re 2h#1", "re 2h#1", "re 2h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T104_good_1.fq.gz Zebrafish_N082-01-T104_good_2.fq.gz", "fastq fastq", 10224077862.0, 34273410.0, "Zebrafish N082 01 T104 good 1.fq.gz", "0:149.15 1:149.15", "A:2604294955;C:2511336108;G:2527667881;T:2580768866;N:10052", 149, 149, null, null, 2604294955, 2511336108, 2527667881, 2580768866, 10052, "SRX8710110", "SRS6986607", "SRA1097576", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94893, 0.94947, 0.06454, 0.06467, 0.66326, 0.66172, 0.45924, 0.46082, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-11", "Larval", "Larval", "Trunk", "Surface Structure"], [60155, "SRR12197603", "SRX8709604", "SRS6986185", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Normal fish post exposed to lethal cold stress for 24h and recoverd at normal temperature for xxxh  replicate #4", "er nor#3", "er nor#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:normal|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#3", "er nor#3", "er nor#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T172_good_1.fq.gz Zebrafish_N082-01-T172_good_2.fq.gz", "fastq fastq", 8506554192.0, 28533509.0, "Zebrafish N082 01 T172 good 1.fq.gz", "0:149.06 1:149.06", "A:2176028633;C:2082458309;G:2097709085;T:2150238585;N:119580", 149, 149, null, null, 2176028633, 2082458309, 2097709085, 2150238585, 119580, "SRX8709604", "SRS6986185", "SRA1097465", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94761, 0.94975, 0.06067, 0.06061, 0.65419, 0.65443, 0.46579, 0.47525, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60156, "SRR12197604", "SRX8709603", "SRS6986184", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Normal fish post exposed to lethal cold stress for 24h and recoverd at normal temperature for xxxh  replicate #2", "er nor#2", "er nor#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:normal|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#2", "er nor#2", "er nor#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T171_good_1.fq.gz Zebrafish_N082-01-T171_good_2.fq.gz", "fastq fastq", 8995710992.0, 30173073.0, "Zebrafish N082 01 T171 good 1.fq.gz", "0:149.07 1:149.07", "A:2298230118;C:2204887359;G:2220602724;T:2271866881;N:123910", 149, 149, null, null, 2298230118, 2204887359, 2220602724, 2271866881, 123910, "SRX8709603", "SRS6986184", "SRA1097465", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94658, 0.94876, 0.06217, 0.06237, 0.65502, 0.65451, 0.46687, 0.46747, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60157, "SRR12197605", "SRX8709602", "SRS6986183", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Normal fish post exposed to lethal cold stress for 24h and recoverd at normal temperature for xxxh  replicate #1", "er nor#1", "er nor#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:normal|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#1", "er nor#1", "er nor#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T170_good_2.fq.gz Zebrafish_N082-01-T170_good_1.fq.gz", "fastq fastq", 7506044838.0, 25191768.0, "Zebrafish N082 01 T170 good 1.fq.gz", "0:148.98 1:148.98", "A:1914522378;C:1840442485;G:1855580567;T:1895395505;N:103903", 148, 148, null, null, 1914522378, 1840442485, 1855580567, 1895395505, 103903, "SRX8709602", "SRS6986183", "SRA1097465", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94858, 0.95019, 0.05917, 0.05953, 0.65837, 0.65685, 0.4702, 0.46832, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60158, "SRR12191835", "SRX8705682", "SRS6982492", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Abnormal fish post exposed to lethal cold stress for 24h and recoverd at normal temperature for xxxh  replicate #4", "er ab#3", "er ab#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:abnormal|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "er ab#3", "er ab#3", "er ab#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T169_good_2.fq.gz Zebrafish_N082-01-T169_good_1.fq.gz", "fastq fastq", 7400288962.0, 24803845.0, "Zebrafish N082 01 T169 good 1.fq.gz", "0:149.18 1:149.18", "A:1888611369;C:1816077248;G:1829706730;T:1865791682;N:101933", 149, 149, null, null, 1888611369, 1816077248, 1829706730, 1865791682, 101933, "SRX8705682", "SRS6982492", "SRA1097128", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94615, 0.94906, 0.05988, 0.06026, 0.662, 0.66109, 0.4534, 0.47434, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60159, "SRR12191836", "SRX8705681", "SRS6982491", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Abnormal fish post exposed to lethal cold stress for 24h and recoverd at normal temperature for xxxh  replicate #2", "er ab#2", "er ab#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:abnormal|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "er ab#2", "er ab#2", "er ab#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T168_good_1.fq.gz Zebrafish_N082-01-T168_good_2.fq.gz", "fastq fastq", 10546122692.0, 35346908.0, "Zebrafish N082 01 T168 good 1.fq.gz", "0:149.18 1:149.18", "A:2699665940;C:2580731900;G:2597823661;T:2667754621;N:146570", 149, 149, null, null, 2699665940, 2580731900, 2597823661, 2667754621, 146570, "SRX8705681", "SRS6982491", "SRA1097128", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.9485, 0.95097, 0.05885, 0.05928, 0.65585, 0.65587, 0.46413, 0.46489, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60160, "SRR12191837", "SRX8705680", "SRS6982490", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Abnormal fish post exposed to lethal cold stress for 24h and recoverd at normal temperature for xxxh  replicate #1", "er ab#1", "er ab#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:abnormal|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "er ab#1", "er ab#1", "er ab#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T167_good_2.fq.gz Zebrafish_N082-01-T167_good_1.fq.gz", "fastq fastq", 8434638850.0, 28264052.0, "Zebrafish N082 01 T167 good 1.fq.gz", "0:149.21 1:149.21", "A:2154726978;C:2069246532;G:2081632624;T:2128914722;N:117994", 149, 149, null, null, 2154726978, 2069246532, 2081632624, 2128914722, 117994, "SRX8705680", "SRS6982490", "SRA1097128", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94793, 0.95053, 0.06213, 0.06244, 0.65764, 0.65815, 0.45875, 0.46018, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60161, "SRR12191838", "SRX8705679", "SRS6982489", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #3", "lc 24h#3", "lc 24h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 24h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#3", "lc 24h#3", "lc 24h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T175_good_2.fq.gz Zebrafish_N082-01-T175_good_1.fq.gz", "fastq fastq", 9280492948.0, 31195529.0, "Zebrafish N082 01 T175 good 1.fq.gz", "0:148.75 1:148.75", "A:2375701991;C:2270956127;G:2279790199;T:2353943787;N:100844", 148, 148, null, null, 2375701991, 2270956127, 2279790199, 2353943787, 100844, "SRX8705679", "SRS6982489", "SRA1097128", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94745, 0.9494, 0.07774, 0.07799, 0.68448, 0.68304, 0.46847, 0.46697, 140, 140, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60162, "SRR12191839", "SRX8705678", "SRS6982488", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #2", "lc 24h#2", "lc 24h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 24h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#2", "lc 24h#2", "lc 24h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T174_good_2.fq.gz Zebrafish_N082-01-T174_good_1.fq.gz", "fastq fastq", 8594096990.0, 28965068.0, "Zebrafish N082 01 T174 good 1.fq.gz", "0:148.35 1:148.35", "A:2196316723;C:2104410238;G:2114879320;T:2178397090;N:93619", 148, 148, null, null, 2196316723, 2104410238, 2114879320, 2178397090, 93619, "SRX8705678", "SRS6982488", "SRA1097128", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94907, 0.94954, 0.07407, 0.07391, 0.68211, 0.68103, 0.46688, 0.46602, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60163, "SRR12191840", "SRX8705677", "SRS6982487", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #1", "lc 24h#1", "lc 24h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 24h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#1", "lc 24h#1", "lc 24h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T173_good_1.fq.gz Zebrafish_N082-01-T173_good_2.fq.gz", "fastq fastq", 8305088740.0, 27997786.0, "Zebrafish N082 01 T173 good 1.fq.gz", "0:148.32 1:148.32", "A:2135411627;C:2023186538;G:2029512813;T:2116886895;N:90867", 148, 148, null, null, 2135411627, 2023186538, 2029512813, 2116886895, 90867, "SRX8705677", "SRS6982487", "SRA1097128", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94913, 0.94986, 0.08265, 0.08233, 0.67862, 0.67754, 0.46912, 0.47096, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60164, "SRR12185264", "SRX8699812", "SRS6977660", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 1h recovery at normal temperature  replicate #3", "re 1h#3", "re 1h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 1h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#3", "re 1h#3", "re 1h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T103_good_2.fq.gz Zebrafish_N082-01-T103_good_1.fq.gz", "fastq fastq", 9268288718.0, 31090829.0, "Zebrafish N082 01 T103 good 1.fq.gz", "0:149.05 1:149.05", "A:2352761773;C:2286212082;G:2297633242;T:2331672593;N:9028", 149, 149, null, null, 2352761773, 2286212082, 2297633242, 2331672593, 9028, "SRX8699812", "SRS6977660", "SRA1096786", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94834, 0.95086, 0.06189, 0.06211, 0.66918, 0.66839, 0.45877, 0.46583, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60165, "SRR12185265", "SRX8699811", "SRS6977659", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 1h recovery at normal temperature  replicate #2", "re 1h#2", "re 1h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 1h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#2", "re 1h#2", "re 1h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T102_good_1.fq.gz Zebrafish_N082-01-T102_good_2.fq.gz", "fastq fastq", 10291789534.0, 34515378.0, "Zebrafish N082 01 T102 good 1.fq.gz", "0:149.09 1:149.09", "A:2622881654;C:2528940070;G:2540934572;T:2599023030;N:10208", 149, 149, null, null, 2622881654, 2528940070, 2540934572, 2599023030, 10208, "SRX8699811", "SRS6977659", "SRA1096786", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94991, 0.95114, 0.06338, 0.06422, 0.66884, 0.6686, 0.4615, 0.45962, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60166, "SRR12185266", "SRX8699810", "SRS6977658", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh followed by 1h recovery at normal temperature  replicate #1", "re 1h#1", "re 1h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:recovery 1h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#1", "re 1h#1", "re 1h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T101_good_1.fq.gz Zebrafish_N082-01-T101_good_2.fq.gz", "fastq fastq", 7717856658.0, 25883590.0, "Zebrafish N082 01 T101 good 1.fq.gz", "0:149.09 1:149.09", "A:1952564085;C:1907899915;G:1920973821;T:1936411176;N:7661", 149, 149, null, null, 1952564085, 1907899915, 1920973821, 1936411176, 7661, "SRX8699810", "SRS6977658", "SRA1096786", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.95003, 0.95187, 0.06064, 0.06115, 0.66805, 0.66758, 0.46042, 0.46086, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Larval", "Larval", "Trunk", "Surface Structure"], [60167, "SRR12182181", "SRX8696733", "SRS6974623", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #3", "lc 12h#3", "lc 12h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 12h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#3", "lc 12h#3", "lc 12h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T97_good_1.fq.gz Zebrafish_N082-01-T97_good_2.fq.gz", "fastq fastq", 10000493852.0, 33512452.0, "Zebrafish N082 01 T97 good 1.fq.gz", "0:149.21 1:149.21", "A:2550626200;C:2455040644;G:2471313138;T:2523503973;N:9897", 149, 149, null, null, 2550626200, 2455040644, 2471313138, 2523503973, 9897, "SRX8696733", "SRS6974623", "SRA1096713", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94567, 0.94653, 0.0732, 0.07308, 0.6745, 0.67491, 0.45441, 0.45192, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60168, "SRR12182182", "SRX8696732", "SRS6974622", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #2", "lc 12h#2", "lc 12h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 12h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#2", "lc 12h#2", "lc 12h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T96_good_2.fq.gz Zebrafish_N082-01-T96_good_1.fq.gz", "fastq fastq", 9556118200.0, 32085173.0, "Zebrafish N082 01 T96 good 1.fq.gz", "0:148.92 1:148.92", "A:2432004886;C:2349392247;G:2365447039;T:2409264784;N:9244", 148, 148, null, null, 2432004886, 2349392247, 2365447039, 2409264784, 9244, "SRX8696732", "SRS6974622", "SRA1096713", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94673, 0.9471, 0.07264, 0.07262, 0.67604, 0.67623, 0.4676, 0.46887, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60169, "SRR12182183", "SRX8696731", "SRS6974621", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #1", "lc 12h#1", "lc 12h#1", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 12h|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#1", "lc 12h#1", "lc 12h#1", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2100 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T95_good_1.fq.gz Zebrafish_N082-01-T95_good_2.fq.gz", "fastq fastq", 11511360014.0, 38631361.0, "Zebrafish N082 01 T95 good 1.fq.gz", "0:148.99 1:148.99", "A:2914647594;C:2846271092;G:2861624774;T:2888804531;N:12023", 148, 148, null, null, 2914647594, 2846271092, 2861624774, 2888804531, 12023, "SRX8696731", "SRS6974621", "SRA1096713", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94679, 0.9488, 0.06686, 0.0673, 0.67746, 0.6773, 0.44988, 0.4488, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60170, "SRR12180096", "SRX8694687", "SRS6973212", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #3", "lc 6h#3", "lc 6h#3", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 6h|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#3", "lc 6h#3", "lc 6h#3", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2102 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T94_good_1.fq.gz Zebrafish_N082-01-T94_good_2.fq.gz", "fastq fastq", 11201321430.0, 37578689.0, "Zebrafish N082 01 T94 good 1.fq.gz", "0:149.04 1:149.04", "A:2840650917;C:2764705734;G:2779659161;T:2816294657;N:10961", 149, 149, null, null, 2840650917, 2764705734, 2779659161, 2816294657, 10961, "SRX8694687", "SRS6973212", "SRA1096652", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94839, 0.94983, 0.06518, 0.06562, 0.66914, 0.669, 0.45535, 0.44686, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-09", "Larval", "Larval", "Trunk", "Surface Structure"], [60171, "SRR12180097", "SRX8694686", "SRS6973211", "SRP270158", "PRJNA644214", "Danio rerio Transcriptome under lethal cold stress", "PRJNA644214", "Transcriptome Analysis", "The transcriptional regulations of fish upon a lethal cold stress and during the following rewarming are not well known. The purpose of this study is to characterize the gene expression dynamics of zebrafish larvae exposed to lethal cold stress and subsequent rewarming. Our data defined the survival and death pathways determining the survival of fish from the cold induced cellular or tissue damage. Modulating the activities of these pathways may enhance cold tolerance of the cold sensitive farmed fishes.", null, null, "Zebrafish larvae exposed to lethal cold stress for xxxh  replicate #2", "lc 6h#2", "lc 6h#2", null, "strain:AB|dev stage:Larvae|sex:not applicable|tissue:Whole body|biomaterial provider:Zongbin Cui  No. 7 Donghu South Road  Wuchang District  Wuhan  Hubei Province  China|treatment:lethal cold stress 6h|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ctrl 97hpf#2", "lc 6h#2", "lc 6h#2", "The RNA sample was sent to Biomarker Technologies http://www.biomarker.com.cn for library construction and RNA sequencing. Briefly  mRNA molecules were enriched using Oligo dT magnetic beads and randomly fragmented. First strand cDNA synthesis was performed using random hexamers. Second strand cDNAs were synthesized by adding dNTPs  RNase and DNA polymerase. The double stranded cDNAs were purified using AMPure XP beads. post end filling  A tailing and sequencing adaptor ligation  cDNA fragments of desired size were selected using AMPure XP beads. Finally  the sequencing library was generated by PCR amplification. Library quantification was performed using a Qubit 2.0 and the insert size of library was analyzed by an Agilent 2101 Bioanalyzer system.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP270158", null, null, "Zebrafish_N082-01-T93_good_2.fq.gz Zebrafish_N082-01-T93_good_1.fq.gz", "fastq fastq", 10285229182.0, 34622036.0, "Zebrafish N082 01 T93 good 1.fq.gz", "0:148.54 1:148.54", "A:2601373459;C:2541982897;G:2559695264;T:2582167207;N:10355", 148, 148, null, null, 2601373459, 2541982897, 2559695264, 2582167207, 10355, "SRX8694686", "SRS6973211", "SRA1096652", "Chinese Academy of Sciences|Institute of Hydrobiology", "Chinese Academy of Sciences", 2, 0.94586, 0.94798, 0.06531, 0.06543, 0.67012, 0.66951, 0.45114, 0.45233, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-09", "Larval", "Larval", "Trunk", "Surface Structure"]], "truncated": false, "filtered_table_rows_count": 215, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", 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