{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"PCR\", experiment.platform = \"ILLUMINA\" and tissue_curation = \"Heart\"", "rows": [[33833, "SRR31441376", "SRX26810183", "SRS22696876", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", "HO 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for HO 2", "HO 1", "HO 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600987--HO_2H.R1.raw.fastq.gz L1EHF0600987--HO_2H.R2.raw.fastq.gz", "fastq fastq", 6373025366.0, 21102733.0, "L1EHF0600987  HO 2H.R1.raw.fastq.gz", "0:151 1:151", "A:1745363166;C:1436102356;G:1463099869;T:1728443182;N:16793", 151, 151, null, null, 1745363166, 1436102356, 1463099869, 1728443182, 16793, "SRX26810183", "SRS22696876", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-22", "Adult", "Adult", "Heart", "Cardiovascular System"], [33834, "SRR30732053", "SRX26134987", "SRS22696876", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", "HO 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for HO 1", "HO 1", "HO 1", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600986--H0_1H.R1.raw.fastq.gz L1EHF0600986--H0_1H.R2.raw.fastq.gz", "fastq fastq", 6369597666.0, 21091383.0, "L1EHF0600986  H0 1H.R1.raw.fastq.gz", "0:151 1:151", "A:1718159779;C:1459536211;G:1492957247;T:1698927602;N:16827", 151, 151, null, null, 1718159779, 1459536211, 1492957247, 1698927602, 16827, "SRX26134987", "SRS22696876", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-19", "Adult", "Adult", "Heart", "Cardiovascular System"], [33835, "SRR30732054", "SRX26134986", "SRS22696875", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2", "WT 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 2", "WT 2", "WT 2", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600985--WT_2H.R1.raw.fastq.gz L1EHF0600985--WT_2H.R2.raw.fastq.gz", "fastq fastq", 6431668934.0, 21296917.0, "L1EHF0600985  WT 2H.R1.raw.fastq.gz", "0:151 1:151", "A:1743394409;C:1464490412;G:1498514260;T:1725252317;N:17536", 151, 151, null, null, 1743394409, 1464490412, 1498514260, 1725252317, 17536, "SRX26134986", "SRS22696875", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-19", "Adult", "Adult", "Heart", "Cardiovascular System"], [33836, "SRR30732055", "SRX26134985", "SRS22696874", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1", "WT 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 1", "WT 1", "WT 1", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600984--WT_1H.R1.raw.fastq.gz L1EHF0600984--WT_1H.R2.raw.fastq.gz", "fastq fastq", 6277896574.0, 20787737.0, "L1EHF0600984  WT 1H.R1.raw.fastq.gz", "0:151 1:151", "A:1703988195;C:1423563137;G:1475908891;T:1674419696;N:16655", 151, 151, null, null, 1703988195, 1423563137, 1475908891, 1674419696, 16655, "SRX26134985", "SRS22696874", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-19", "Adult", "Adult", "Heart", "Cardiovascular System"], [34188, "SRR31441224", "SRX26810034", "SRS23295247", "SRP546933", "PRJNA1189340", "Pseudoxanthoma elasticum PXE disease model and heart regeneration", "PRJNA1189340", "Other", null, null, null, null, "RNA Seq for abcc6a8nt /  mutant cryosection zebrafish hearts at 6 mpf 8 mpf  rep2", "HO 2 cryosection heart", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for HO 2", "HO 2", "HO 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP546933", null, null, "L1EIA1200826-HO_2.R1.raw.fastq.gz L1EIA1200826-HO_2.R2.raw.fastq.gz", "fastq fastq", 7242400014.0, 23981457.0, "L1EIA1200826 HO 2.R1.raw.fastq.gz", "0:151 1:151", "A:2002602509;C:1618196753;G:1648132346;T:1968161693;N:5306713", 151, 151, null, null, 2002602509, 1618196753, 1648132346, 1968161693, 5306713, "SRX26810034", "SRS23295247", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-22", "Adult", "Adult", "Heart", "Cardiovascular System"], [34189, "SRR31441225", "SRX26810033", "SRS23295246", "SRP546933", "PRJNA1189340", "Pseudoxanthoma elasticum PXE disease model and heart regeneration", "PRJNA1189340", "Other", null, null, null, null, "RNA Seq for abcc6a8nt /  mutant zebrafish cryosection  hearts at 6 mpf 8 mpf  rep1", "HO 1 cryosection heart", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for HO 1", "HO 1", "HO 1", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP546933", null, null, "L1EIA1200825-HO_1.R1.raw.fastq.gz L1EIA1200825-HO_1.R2.raw.fastq.gz", "fastq fastq", 7908051502.0, 26185601.0, "L1EIA1200825 HO 1.R1.raw.fastq.gz", "0:151 1:151", "A:2187398944;C:1761592009;G:1795611307;T:2157740883;N:5708359", 151, 151, null, null, 2187398944, 1761592009, 1795611307, 2157740883, 5708359, "SRX26810033", "SRS23295246", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-22", "Adult", "Adult", "Heart", "Cardiovascular System"], [34190, "SRR31441226", "SRX26810032", "SRS23295245", "SRP546933", "PRJNA1189340", "Pseudoxanthoma elasticum PXE disease model and heart regeneration", "PRJNA1189340", "Other", null, null, null, null, "RNA Seq for abcc6a+/+ zebrafish cryosection hearts at 6 mpf 8 mpf  rep2", "WT 2 cryosection heart", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 2", "WT 2", "WT 2", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP546933", null, null, "L1EIA1200823-WT_2.R1.raw.fastq.gz L1EIA1200823-WT_2.R2.raw.fastq.gz", "fastq fastq", 7322202306.0, 24245703.0, "L1EIA1200823 WT 2.R1.raw.fastq.gz", "0:151 1:151", "A:2040218817;C:1615688362;G:1649087360;T:2012040914;N:5166853", 151, 151, null, null, 2040218817, 1615688362, 1649087360, 2012040914, 5166853, "SRX26810032", "SRS23295245", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-22", "Adult", "Adult", "Heart", "Cardiovascular System"], [34191, "SRR31441227", "SRX26810031", "SRS23295244", "SRP546933", "PRJNA1189340", "Pseudoxanthoma elasticum PXE disease model and heart regeneration", "PRJNA1189340", "Other", null, null, null, null, "RNA Seq for abcc6a+/+ zebrafish  cryosection hearts at 6 mpf 8 mpf  rep1", "WT 1 cryosection heart", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 1", "WT 1", "WT 1", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP546933", null, null, "L1EIA1200822-WT_1.R1.raw.fastq.gz L1EIA1200822-WT_1.R2.raw.fastq.gz", "fastq fastq", 7055242460.0, 23361730.0, "L1EIA1200822 WT 1.R1.raw.fastq.gz", "0:151 1:151", "A:1997464555;C:1527077848;G:1561244846;T:1964383184;N:5072027", 151, 151, null, null, 1997464555, 1527077848, 1561244846, 1964383184, 5072027, "SRX26810031", "SRS23295244", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-22", "Adult", "Adult", "Heart", "Cardiovascular System"], [34198, "SRR31479986", "SRX26848533", "SRS23332379", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type3B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type3B 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 08|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type3B 2", "Type3B 2", "Type3B 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600995--Type3B_2.R1.raw.fastq.gz L1EHF0600995--Type3B_2.R2.raw.fastq.gz", "fastq fastq", 7042308404.0, 23318902.0, "L1EHF0600995  Type3B 2.R1.raw.fastq.gz", "0:151 1:151", "A:1844855580;C:1674932476;G:1701372344;T:1821129313;N:18691", 151, 151, null, null, 1844855580, 1674932476, 1701372344, 1821129313, 18691, "SRX26848533", "SRS23332379", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34199, "SRR31479987", "SRX26848532", "SRS23332378", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type3B 1  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type3B 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 07|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type3B 1", "Type3B 1", "Type3B 1", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600994--Type3B_1.R1.raw.fastq.gz L1EHF0600994--Type3B_1.R2.raw.fastq.gz", "fastq fastq", 9559607056.0, 31654328.0, "L1EHF0600994  Type3B 1.R1.raw.fastq.gz", "0:151 1:151", "A:2506873093;C:2261724862;G:2309662215;T:2481321575;N:25311", 151, 151, null, null, 2506873093, 2261724862, 2309662215, 2481321575, 25311, "SRX26848532", "SRS23332378", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34200, "SRR31479988", "SRX26848531", "SRS23332377", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type2B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type2B 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 06|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type2B 2", "Type2B 2", "Type2B 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600993--Type2B_2.R1.raw.fastq.gz L1EHF0600993--Type2B_2.R2.raw.fastq.gz", "fastq fastq", 8451570566.0, 27985333.0, "L1EHF0600993  Type2B 2.R1.raw.fastq.gz", "0:151 1:151", "A:2206016865;C:2013747714;G:2053206643;T:2178577239;N:22105", 151, 151, null, null, 2206016865, 2013747714, 2053206643, 2178577239, 22105, "SRX26848531", "SRS23332377", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34201, "SRR31479989", "SRX26848530", "SRS23332376", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type2B 1  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type2B 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 05|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type2B 1", "Type2B 1", "Type2B 1", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600992--Type2B_1.R1.raw.fastq.gz L1EHF0600992--Type2B_1.R2.raw.fastq.gz", "fastq fastq", 8173656576.0, 27065088.0, "L1EHF0600992  Type2B 1.R1.raw.fastq.gz", "0:151 1:151", "A:2108108352;C:1972206034;G:2007561479;T:2085759073;N:21638", 151, 151, null, null, 2108108352, 1972206034, 2007561479, 2085759073, 21638, "SRX26848530", "SRS23332376", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34202, "SRR31479990", "SRX26848529", "SRS23332375", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type1B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type1B 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 04|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type1B 2", "Type1B 2", "Type1B 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600991--Type1B_2.R1.raw.fastq.gz L1EHF0600991--Type1B_2.R2.raw.fastq.gz", "fastq fastq", 6856733934.0, 22704417.0, "L1EHF0600991  Type1B 2.R1.raw.fastq.gz", "0:151 1:151", "A:1819254779;C:1602255119;G:1640783411;T:1794422519;N:18106", 151, 151, null, null, 1819254779, 1602255119, 1640783411, 1794422519, 18106, "SRX26848529", "SRS23332375", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34203, "SRR31479991", "SRX26848528", "SRS23332374", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type1B 1 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type1B 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 03|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type1B 1", "Type1B 1", "Type1B 1", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600990--Type1B_1.R1.raw.fastq.gz L1EHF0600990--Type1B_1.R2.raw.fastq.gz", "fastq fastq", 8199716760.0, 27151380.0, "L1EHF0600990  Type1B 1.R1.raw.fastq.gz", "0:151 1:151", "A:2143640345;C:1952882726;G:1983987224;T:2119185119;N:21346", 151, 151, null, null, 2143640345, 1952882726, 1983987224, 2119185119, 21346, "SRX26848528", "SRS23332374", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34204, "SRR31479992", "SRX26848527", "SRS23332373", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for WT 2B   abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep2", "WT 2B", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 02|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 2B", "WT 2B", "WT 2B", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600989--WT_2B.R1.raw.fastq.gz L1EHF0600989--WT_2B.R2.raw.fastq.gz", "fastq fastq", 7647939204.0, 25324302.0, "L1EHF0600989  WT 2B.R1.raw.fastq.gz", "0:151 1:151", "A:1987849331;C:1831909030;G:1863287600;T:1964873314;N:19929", 151, 151, null, null, 1987849331, 1831909030, 1863287600, 1964873314, 19929, "SRX26848527", "SRS23332373", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34205, "SRR31479993", "SRX26848526", "SRS23332372", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for WT 1B   abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "WT 1B", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 01|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 1B", "WT 1B", "WT 1B", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600988--WT_1B.R1.raw.fastq.gz L1EHF0600988--WT_1B.R2.raw.fastq.gz", "fastq fastq", 6899503476.0, 22846038.0, "L1EHF0600988  WT 1B.R1.raw.fastq.gz", "0:151 1:151", "A:1785929563;C:1655039537;G:1701749629;T:1756766946;N:17801", 151, 151, null, null, 1785929563, 1655039537, 1701749629, 1756766946, 17801, "SRX26848526", "SRS23332372", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"]], "truncated": false, "filtered_table_rows_count": 16, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"experiment.platform\" = :p1 and \"tissue_curation\" = :p2 order by rowid limit 101", "params": {"p0": "PCR", "p1": "ILLUMINA", "p2": "Heart"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "PCR", "label": "PCR", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.platform=ILLUMINA&tissue_curation=Heart", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "PAIRED", "label": "PAIRED", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&experiment.library_layout=PAIRED", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&tissue_curation=Heart", "selected": true}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "Adult", "label": "Adult", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&devstage_curation_coarse=Adult", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "Adult", "label": "Adult", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&devstage_curation=Adult", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "Cardiovascular System", "label": "Cardiovascular System", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&tissue_curation_coarse=Cardiovascular+System", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "Heart", "label": "Heart", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA", "selected": true}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart", "results": [{"value": "unknown", "label": "unknown", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.platform=ILLUMINA&tissue_curation=Heart&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 88.63682800438255}