{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"PCR\", experiment.library_source = \"TRANSCRIPTOMIC\" and experiment.library_strategy = \"RNA-Seq\"", "rows": [[8076, "ERR2304209", "ERX2355537", "ERS2201745", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged mutant biorep3", "SAMEA104590463", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12", "9 psen1K97Gfshet 24mth 13 03 2014 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz", "fastq fastq", 9318039088.0, 38360343.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12", "0:121.17 1:121.74", "A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148", 121, 121, null, null, 2583644589, 2091813317, 2105322994, 2536795040, 463148, "ERX2355537", "ERS2201745", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.93003, 0.92836, 0.26254, 0.26157, 0.68992, 0.69593, 0.48246, 0.48292, 134, 134, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8077, "ERR2304208", "ERX2355536", "ERS2201744", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged mutant biorep2", "SAMEA104590462", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11", "8 psen1K97Gfshet 24mth 13 03 2014 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz", "fastq fastq", 8559244581.0, 35608377.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11", "0:119.87 1:120.50", "A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710", 119, 120, null, null, 2397336730, 1892236963, 1910506310, 2358778868, 385710, "ERX2355536", "ERS2201744", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92422, 0.92311, 0.30514, 0.30437, 0.69578, 0.7008, 0.49054, 0.48857, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8078, "ERR2304207", "ERX2355535", "ERS2201743", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged mutant biorep1", "SAMEA104590461", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590461|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep1|common name:zebrafish|sample name:Aged mutant biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10", "7 psen1K97Gfshet 24mth 13 03 2014 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R1.fastq.gz 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R2.fastq.gz", "fastq fastq", 6521711648.0, 27182062.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10", "0:119.65 1:120.27", "A:1831722484;C:1434689482;G:1449266189;T:1805677755;N:355738", 119, 120, null, null, 1831722484, 1434689482, 1449266189, 1805677755, 355738, "ERX2355535", "ERS2201743", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92564, 0.92498, 0.29344, 0.29212, 0.69327, 0.69964, 0.48557, 0.48942, 86, 86, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8079, "ERR2304206", "ERX2355534", "ERS2201742", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged wild type biorep3", "SAMEA104590460", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590460|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep3|common name:zebrafish|sample name:Aged wild type biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9", "3 non mutant K97Gfs 24mth 13 03 2014 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R1.fastq.gz 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R2.fastq.gz", "fastq fastq", 6865452019.0, 28646225.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9", "0:119.50 1:120.16", "A:1903309108;C:1535570672;G:1550661363;T:1875578941;N:331935", 119, 120, null, null, 1903309108, 1535570672, 1550661363, 1875578941, 331935, "ERX2355534", "ERS2201742", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92997, 0.92904, 0.26949, 0.26497, 0.69485, 0.70072, 0.49378, 0.50075, 96, 96, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8080, "ERR2304205", "ERX2355533", "ERS2201741", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged wild type biorep2", "SAMEA104590459", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590459|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep2|common name:zebrafish|sample name:Aged wild type biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8", "2 non mutant K97Gfs 24mth 13 03 2014 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R1.fastq.gz 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R2.fastq.gz", "fastq fastq", 8418868343.0, 34905186.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8", "0:120.29 1:120.91", "A:2334515884;C:1885784857;G:1900432559;T:2297775998;N:359045", 120, 120, null, null, 2334515884, 1885784857, 1900432559, 2297775998, 359045, "ERX2355533", "ERS2201741", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.93078, 0.92967, 0.25478, 0.25365, 0.69372, 0.69938, 0.4988, 0.49709, 132, 132, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8081, "ERR2304204", "ERX2355532", "ERS2201740", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Aged wild type biorep1", "SAMEA104590458", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590458|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep1|common name:zebrafish|sample name:Aged wild type biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7", "1 non mutant K97Gfs 24mth 13 03 2014 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R1.fastq.gz 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R2.fastq.gz", "fastq fastq", 6628468736.0, 27477727.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7", "0:120.31 1:120.92", "A:1839014115;C:1487750495;G:1497160978;T:1804205119;N:338029", 120, 120, null, null, 1839014115, 1487750495, 1497160978, 1804205119, 338029, "ERX2355532", "ERS2201740", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92916, 0.92783, 0.28453, 0.28375, 0.69798, 0.70289, 0.48132, 0.48227, 125, 125, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8082, "ERR2304203", "ERX2355531", "ERS2201739", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young mutant biorep3", "SAMEA104590457", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590457|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep3|common name:zebrafish|sample name:Young mutant biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6", "12 psen1K97Gfshet 6mth 10 03 2016 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R1.fastq.gz 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R2.fastq.gz", "fastq fastq", 11485397100.0, 38284657.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6", "0:150 1:150", "A:3206707597;C:2539306860;G:2721427816;T:3015264084;N:2690743", 150, 150, null, null, 3206707597, 2539306860, 2721427816, 3015264084, 2690743, "ERX2355531", "ERS2201739", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92853, 0.92813, 0.26757, 0.26433, 0.68487, 0.68903, 0.47708, 0.47074, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8083, "ERR2304202", "ERX2355530", "ERS2201738", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young mutant biorep2", "SAMEA104590456", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590456|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep2|common name:zebrafish|sample name:Young mutant biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5", "11 psen1K97Gfshet 6mth 10 03 2016 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R1.fastq.gz 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R2.fastq.gz", "fastq fastq", 13258122000.0, 44193740.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5", "0:150 1:150", "A:3781076311;C:2868334319;G:3063279426;T:3542309854;N:3122090", 150, 150, null, null, 3781076311, 2868334319, 3063279426, 3542309854, 3122090, "ERX2355530", "ERS2201738", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91552, 0.91659, 0.32337, 0.32168, 0.69546, 0.698, 0.4697, 0.47295, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8084, "ERR2304201", "ERX2355529", "ERS2201737", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young mutant biorep1", "SAMEA104590455", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4", "10 psen1K97Gfshet 6mth 10 03 2016 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz", "fastq fastq", 11724649800.0, 39082166.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4", "0:150 1:150", "A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083", 150, 150, null, null, 3304100658, 2560616667, 2779636286, 3077545106, 2751083, "ERX2355529", "ERS2201737", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.92121, 0.91893, 0.28263, 0.27928, 0.69073, 0.6953, 0.47174, 0.46157, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8085, "ERR2304200", "ERX2355528", "ERS2201736", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young wild type biorep3", "SAMEA104590454", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590454|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep3|common name:zebrafish|sample name:Young wild type biorep3", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3", "6 non mutant K97Gfs 6mth 10 03 2016 S3 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R2.fastq.gz", "fastq fastq", 24923212200.0, 83077374.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3", "0:150 1:150", "A:7077378299;C:5398402396;G:5838059014;T:6604505033;N:4867458", 150, 150, null, null, 7077378299, 5398402396, 5838059014, 6604505033, 4867458, "ERX2355528", "ERS2201736", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91973, 0.92144, 0.29148, 0.29015, 0.69587, 0.69994, 0.46145, 0.47047, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8086, "ERR2304199", "ERX2355527", "ERS2201735", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young wild type biorep2", "SAMEA104590453", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590453|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep2|common name:zebrafish|sample name:Young wild type biorep2", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2", "5 non mutant K97Gfs 6mth 10 03 2016 S2 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R2.fastq.gz", "fastq fastq", 7840317153.0, 39006553.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2", "0:101 1:100", "A:2200490653;C:1718458832;G:1730278863;T:2188900320;N:2188485", 101, 100, null, null, 2200490653, 1718458832, 1730278863, 2188900320, 2188485, "ERX2355527", "ERS2201735", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91783, 0.91983, 0.32092, 0.32105, 0.67714, 0.67691, 0.47312, 0.47481, 101, 100, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [8087, "ERR2304198", "ERX2355526", "ERS2201734", "ERP106721", "PRJEB24858", "Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1", "ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099", "Other", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08", null, null, "Young wild type biorep1", "SAMEA104590452", "Adelaide Bioinformatics Hub", "ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1", null, null, null, null, null, null, null, null, "NextSeq 500 paired end sequencing", "ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1", "4 non mutant K97Gfs 6mth 10 03 2016 S1 fem", "RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease", "Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.", null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "ERP106721", "NextSeq 500 paired end sequencing", "ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16", "4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz", "fastq fastq", 13910901600.0, 46369672.0, "ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1", "0:150 1:150", "A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629", 150, 150, null, null, 3994738757, 2957179645, 3191379676, 3764325893, 3277629, "ERX2355526", "ERS2201734", "ERA1210082", "Adelaide Bioinformatics Hub|European Nucleotide Archive", "Adelaide Bioinformatics Hub", 2, 0.91399, 0.9166, 0.3202, 0.31818, 0.6942, 0.698, 0.46902, 0.47111, 150, 150, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Australia", "2018-02-08", "Undetermined", "Adult", "Brain", "Nervous System"], [28496, "SRR26321412", "SRX22029502", "SRS19102283", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 1", "R27", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R27", "R27", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R27.fastq", "fastq", 23400.0, 312.0, "R27.fastq", "0:75", "A:7949;C:4612;G:4730;T:6100;N:9", 75, null, null, null, 7949, 4612, 4730, 6100, 9, "SRX22029502", "SRS19102283", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89642, null, 0.06772, null, 0.99827, null, 0.75, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28497, "SRR26321413", "SRX22029501", "SRS19102284", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 4", "R22", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R22", "R22", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R22.fastq", "fastq", 23400.0, 312.0, "R22.fastq", "0:75", "A:7470;C:4460;G:5063;T:6404;N:3", 75, null, null, null, 7470, 4460, 5063, 6404, 3, "SRX22029501", "SRS19102284", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87073, null, 0.12167, null, 0.99801, null, 0.73157, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28498, "SRR26321414", "SRX22029500", "SRS19102281", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "R21", "R21", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R21", "R21", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R21.fastq", "fastq", 23400.0, 312.0, "R21.fastq", "0:75", "A:7540;C:4349;G:4857;T:6646;N:8", 75, null, null, null, 7540, 4349, 4857, 6646, 8, "SRX22029500", "SRS19102281", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.8839, null, 0.04494, null, 0.99768, null, 0.72769, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28499, "SRR26321415", "SRX22029499", "SRS19102282", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 2", "R18", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R18", "R18", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R18.fastq", "fastq", 23400.0, 312.0, "R18.fastq", "0:75", "A:7380;C:4430;G:5069;T:6518;N:3", 75, null, null, null, 7380, 4430, 5069, 6518, 3, "SRX22029499", "SRS19102282", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87259, null, 0.11196, null, 0.99784, null, 0.69791, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28500, "SRR26321416", "SRX22029498", "SRS19102280", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 1", "R17", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R17", "R17", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R17.fastq", "fastq", 23400.0, 312.0, "R17.fastq", "0:75", "A:7322;C:4455;G:5111;T:6507;N:5", 75, null, null, null, 7322, 4455, 5111, 6507, 5, "SRX22029498", "SRS19102280", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90439, null, 0.12749, null, 0.99813, null, 0.71052, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28501, "SRR26321417", "SRX22029497", "SRS19102279", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 5", "R1", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R1", "R1", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R1.fastq", "fastq", 23400.0, 312.0, "R1.fastq", "0:75", "A:7934;C:4560;G:4922;T:5980;N:4", 75, null, null, null, 7934, 4560, 4922, 5980, 4, "SRX22029497", "SRS19102279", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87045, null, 0.10526, null, 0.99805, null, 0.71978, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28502, "SRR26321418", "SRX22029496", "SRS19102277", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 4", "R64", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R64", "R64", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R64.fastq", "fastq", 23400.0, 312.0, "R64.fastq", "0:75", "A:7844;C:4626;G:4804;T:6126;N:0", 75, null, null, null, 7844, 4626, 4804, 6126, 0, "SRX22029496", "SRS19102277", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90119, null, 0.07509, null, 0.99839, null, 0.8, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28503, "SRR26321419", "SRX22029495", "SRS19102278", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 3", "R61", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R61", "R61", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R61.fastq", "fastq", 23400.0, 312.0, "R61.fastq", "0:75", "A:7454;C:4556;G:4960;T:6425;N:5", 75, null, null, null, 7454, 4556, 4960, 6425, 5, "SRX22029495", "SRS19102278", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89098, null, 0.06015, null, 0.99813, null, 0.77102, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28504, "SRR26321420", "SRX22029494", "SRS19102276", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 4", "30", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "30", "30", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "30.fastq", "fastq", 23400.0, 312.0, "30.fastq", "0:75", "A:7732;C:4528;G:5150;T:5987;N:3", 75, null, null, null, 7732, 4528, 5150, 5987, 3, "SRX22029494", "SRS19102276", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.88447, null, 0.13147, null, 0.99772, null, 0.71584, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28505, "SRR26321421", "SRX22029493", "SRS19102275", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "R11", "R11", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "R11", "R11", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R11.fastq", "fastq", 23400.0, 312.0, "R11.fastq", "0:75", "A:7818;C:4507;G:5107;T:5956;N:12", 75, null, null, null, 7818, 4507, 5107, 5956, 12, "SRX22029493", "SRS19102275", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89345, null, 0.11475, null, 0.99847, null, 0.82258, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28506, "SRR26321422", "SRX22029492", "SRS19102274", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 2", "31", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "31", "31", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "31.fastq", "fastq", 23400.0, 312.0, "31.fastq", "0:75", "A:7470;C:4619;G:4802;T:6504;N:5", 75, null, null, null, 7470, 4619, 4802, 6504, 5, "SRX22029492", "SRS19102274", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87699, null, 0.11111, null, 0.99829, null, 0.78918, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28507, "SRR26321423", "SRX22029491", "SRS19102273", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 1", "R9", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "R9", "R9", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R9.fastq", "fastq", 23400.0, 312.0, "R9.fastq", "0:75", "A:8130;C:4537;G:4809;T:5917;N:7", 75, null, null, null, 8130, 4537, 4809, 5917, 7, "SRX22029491", "SRS19102273", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.83588, null, 0.05725, null, 0.99801, null, 0.68586, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28508, "SRR26321424", "SRX22029490", "SRS19102272", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 4", "R33", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R33", "R33", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R33.fastq", "fastq", 23400.0, 312.0, "R33.fastq", "0:75", "A:7745;C:4421;G:4867;T:6360;N:7", 75, null, null, null, 7745, 4421, 4867, 6360, 7, "SRX22029490", "SRS19102272", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87259, null, 0.07335, null, 0.99805, null, 0.71428, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28509, "SRR26321425", "SRX22029489", "SRS19102271", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 3", "R31", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R31", "R31", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R31.fastq", "fastq", 23400.0, 312.0, "R31.fastq", "0:75", "A:7441;C:4483;G:5163;T:6313;N:0", 75, null, null, null, 7441, 4483, 5163, 6313, 0, "SRX22029489", "SRS19102271", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.9, null, 0.05925, null, 0.9977, null, 0.68325, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28510, "SRR26321426", "SRX22029488", "SRS19102270", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 2", "R29", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R29", "R29", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R29.fastq", "fastq", 23400.0, 312.0, "R29.fastq", "0:75", "A:7379;C:4698;G:5166;T:6156;N:1", 75, null, null, null, 7379, 4698, 5166, 6156, 1, "SRX22029488", "SRS19102270", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.91016, null, 0.05859, null, 0.99797, null, 0.74528, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28511, "SRR26321427", "SRX22029487", "SRS19102269", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 2", "R62", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R62", "R62", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R62.fastq", "fastq", 23400.0, 312.0, "R62.fastq", "0:75", "A:7383;C:4566;G:4713;T:6728;N:10", 75, null, null, null, 7383, 4566, 4713, 6728, 10, "SRX22029487", "SRS19102269", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.91571, null, 0.05363, null, 0.99835, null, 0.77674, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28512, "SRR26321428", "SRX22029486", "SRS19102268", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, "Replicate 1 for SHAM", "SHAM 1", "R63", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia: Melbourne|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R63", "R63", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R63.fastq", "fastq", 23400.0, 312.0, "R63.fastq", "0:75", "A:7516;C:4606;G:4765;T:6508;N:5", 75, null, null, null, 7516, 4606, 4765, 6508, 5, "SRX22029486", "SRS19102268", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90385, null, 0.0423, null, 0.99805, null, 0.72429, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [29168, "SRR27217530", "SRX22896259", "SRS19868304", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "WT PGC 24 3", null, "strain:WT3|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT PGC 24 3", "WT PGC 24 3", "WT PGC 24 3", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "WT_PGC_24-3_R2.fq.gz WT_PGC_24-3_R1.fq.gz", "fastq fastq", 6949077900.0, 23163593.0, "WT PGC 24 3 R1.fq.gz", "0:150 1:150", "A:1804348571;C:1658503849;G:1701777260;T:1784405264;N:42956", 150, 150, null, null, 1804348571, 1658503849, 1701777260, 1784405264, 42956, "SRX22896259", "SRS19868304", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95381, 0.95191, 0.06445, 0.06402, 0.7069, 0.7083, 0.47573, 0.47795, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29169, "SRR27217531", "SRX22896258", "SRS19868303", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "WT PGC 24 2", null, "strain:WT2|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT PGC 24 2", "WT PGC 24 2", "WT PGC 24 2", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "WT_PGC_24-2_R1.fq.gz WT_PGC_24-2_R2.fq.gz", "fastq fastq", 6675099900.0, 22250333.0, "WT PGC 24 2 R1.fq.gz", "0:150 1:150", "A:1719486221;C:1606465584;G:1644483527;T:1704624083;N:40485", 150, 150, null, null, 1719486221, 1606465584, 1644483527, 1704624083, 40485, "SRX22896258", "SRS19868303", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95744, 0.95652, 0.04846, 0.04825, 0.70804, 0.70912, 0.46447, 0.46577, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29170, "SRR27217532", "SRX22896257", "SRS19868302", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "WT PGC 24 1", null, "strain:WT1|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT PGC 24 1", "WT PGC 24 1", "WT PGC 24 1", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "WT_PGC_24-1_R1.fq.gz WT_PGC_24-1_R2.fq.gz", "fastq fastq", 7064831700.0, 23549439.0, "WT PGC 24 1 R1.fq.gz", "0:150 1:150", "A:1832305833;C:1686352652;G:1738278540;T:1807852822;N:41853", 150, 150, null, null, 1832305833, 1686352652, 1738278540, 1807852822, 41853, "SRX22896257", "SRS19868302", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95848, 0.95777, 0.0631, 0.06254, 0.72157, 0.72247, 0.4731, 0.47372, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29171, "SRR27217533", "SRX22896256", "SRS19868301", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "A1 PGC 24 3", null, "strain:TRPA1b KO3|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1 PGC 24 3", "A1 PGC 24 3", "A1 PGC 24 3", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "A1_PGC_24-3_R1.fq.gz A1_PGC_24-3_R2.fq.gz", "fastq fastq", 6953061600.0, 23176872.0, "A1 PGC 24 3 R1.fq.gz", "0:150 1:150", "A:1810976064;C:1652614300;G:1697456695;T:1791972886;N:41655", 150, 150, null, null, 1810976064, 1652614300, 1697456695, 1791972886, 41655, "SRX22896256", "SRS19868301", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95143, 0.95105, 0.07009, 0.06986, 0.69627, 0.6969, 0.46658, 0.46554, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29172, "SRR27217534", "SRX22896255", "SRS19868300", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "A1 PGC 24 2", null, "strain:TRPA1b KO2|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1 PGC 24 2", "A1 PGC 24 2", "A1 PGC 24 2", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "A1_PGC_24-2_R1.fq.gz A1_PGC_24-2_R2.fq.gz", "fastq fastq", 6940389600.0, 23134632.0, "A1 PGC 24 2 R1.fq.gz", "0:150 1:150", "A:1785833122;C:1673393460;G:1710182746;T:1770937783;N:42489", 150, 150, null, null, 1785833122, 1673393460, 1710182746, 1770937783, 42489, "SRX22896255", "SRS19868300", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95372, 0.95441, 0.06919, 0.06949, 0.70013, 0.70177, 0.47547, 0.47456, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [29173, "SRR27217535", "SRX22896254", "SRS19868299", "SRP478184", "PRJNA1052591", "Danio rerio Raw sequence reads", "PRJNA1052591", "Other", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", null, null, null, null, "A1 PGC 24 1", null, "strain:TRPA1b KO1|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1 PGC 24 1", "A1 PGC 24 1", "A1 PGC 24 1", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP478184", null, null, "A1_PGC_24-1_R1.fq.gz A1_PGC_24-1_R2.fq.gz", "fastq fastq", 6604300500.0, 22014335.0, "A1 PGC 24 1 R1.fq.gz", "0:150 1:150", "A:1719784265;C:1571368991;G:1612164427;T:1700943908;N:38909", 150, 150, null, null, 1719784265, 1571368991, 1612164427, 1700943908, 38909, "SRX22896254", "SRS19868299", "SRA1769619", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", 2, 0.95474, 0.95309, 0.06766, 0.06685, 0.69753, 0.69929, 0.47173, 0.46856, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-12-15", "Pharyngula", "Embryo", "Trunk", "Surface Structure"], [30066, "SRR27676305", "SRX23343658", "SRS20205511", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "smart seq of setdb1b mt 2", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id</u><u>:9</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "smart seq of setdb1b mt 2", "smart seq of setdb1b mt 2", "smart seq of setdb1b mt 2", "smart seq of setdb1b mt of replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "smart-seq of setdb1b mt_2_R2.fastq.gz.gz smart-seq of setdb1b mt_2_R1.fastq.gz.gz", "fastq fastq", 11957458200.0, 39858194.0, "smart seq of setdb1b mt 2 R1.fastq.gz.gz", "0:150 1:150", "A:3692371435;C:1893324720;G:2810967928;T:3560751613;N:42504", 150, 150, null, null, 3692371435, 1893324720, 2810967928, 3560751613, 42504, "SRX23343658", "SRS20205511", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.76332, 0.82639, 0.22191, 0.23939, 0.87093, 0.87117, 0.59757, 0.60008, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30067, "SRR27676306", "SRX23343657", "SRS20205510", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "smart seq of setdb1b mt 1", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id</u><u>:8</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "smart seq of setdb1b mt 1", "smart seq of setdb1b mt 1", "smart seq of setdb1b mt 1", "smart seq of setdb1b mt of replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "smart-seq of setdb1b mt_1_R1.fastq.gz.gz smart-seq of setdb1b mt_1_R2.fastq.gz.gz", "fastq fastq", 9537788700.0, 31792629.0, "smart seq of setdb1b mt 1 R1.fastq.gz.gz", "0:150 1:150", "A:3044433376;C:1450924984;G:2142347814;T:2900047705;N:34821", 150, 150, null, null, 3044433376, 1450924984, 2142347814, 2900047705, 34821, "SRX23343657", "SRS20205510", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.74808, 0.79354, 0.21148, 0.22263, 0.87405, 0.87545, 0.58431, 0.58836, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30068, "SRR27676307", "SRX23343656", "SRS20205509", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "smart seq of setdb1b control 2", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id</u><u>:7</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "smart seq of setdb1b control 2", "smart seq of setdb1b control 2", "smart seq of setdb1b control 2", "smart seq of setdb1b control of replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "smart-seq of setdb1b control_2_R1.fastq.gz.gz smart-seq of setdb1b control_2_R2.fastq.gz.gz", "fastq fastq", 7963596600.0, 26545322.0, "smart seq of setdb1b control 2 R1.fastq.gz.gz", "0:150 1:150", "A:2522387513;C:1217203824;G:1776725064;T:2447251088;N:29111", 150, 150, null, null, 2522387513, 1217203824, 1776725064, 2447251088, 29111, "SRX23343656", "SRS20205509", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.77121, 0.80578, 0.22631, 0.23757, 0.85953, 0.86298, 0.58219, 0.58387, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30069, "SRR27676308", "SRX23343655", "SRS20205508", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "smart seq of setdb1b control 1", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id</u><u>:6</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "smart seq of setdb1b control 1", "smart seq of setdb1b control 1", "smart seq of setdb1b control 1", "smart seq of setdb1b control of replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "smart-seq of setdb1b control_1_R2.fastq.gz.gz smart-seq of setdb1b control_1_R1.fastq.gz.gz", "fastq fastq", 11867370900.0, 39557903.0, "smart seq of setdb1b control 1 R1.fastq.gz.gz", "0:150 1:150", "A:3969636478;C:1678555005;G:2520767064;T:3698368678;N:43675", 150, 150, null, null, 3969636478, 1678555005, 2520767064, 3698368678, 43675, "SRX23343655", "SRS20205508", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.73517, 0.73836, 0.23036, 0.23129, 0.86407, 0.86675, 0.59652, 0.59533, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30070, "SRR27676309", "SRX23343654", "SRS20205505", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "RNA seq of atf7ip mt 2", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id</u><u>:5</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mRNAseq of atf7ip mt", "RNA seq of atf7ip mt 2", "RNA seq of atf7ip mt 2", "mRNAseq of atf7ip mt of replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "RNA-seq of atf7ip mt_2_R2.fastq.gz.gz RNA-seq of atf7ip mt_2_R1.fastq.gz.gz", "fastq fastq", 2881485000.0, 9604950.0, "RNA seq of atf7ip mt 2 R1.fastq.gz.gz", "0:150 1:150", "A:714870764;C:672086586;G:819085358;T:675370688;N:71604", 150, 150, null, null, 714870764, 672086586, 819085358, 675370688, 71604, "SRX23343654", "SRS20205505", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.95105, 0.94782, 0.0877, 0.08683, 0.67838, 0.68085, 0.4943, 0.49308, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30071, "SRR27676310", "SRX23343653", "SRS20205506", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "RNA seq of atf7ip mt 1", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id</u><u>:4</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mRNAseq of atf7ip mt", "RNA seq of atf7ip mt 1", "RNA seq of atf7ip mt 1", "mRNAseq of atf7ip mt of replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "RNA-seq of atf7ip mt_1_R2.fastq.gz.gz RNA-seq of atf7ip mt_1_R1.fastq.gz.gz", "fastq fastq", 5215476900.0, 17384923.0, "RNA seq of atf7ip mt 1 R1.fastq.gz.gz", "0:150 1:150", "A:1305694077;C:1250588317;G:1437727006;T:1221425310;N:42190", 150, 150, null, null, 1305694077, 1250588317, 1437727006, 1221425310, 42190, "SRX23343653", "SRS20205506", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.95459, 0.9546, 0.09418, 0.0933, 0.67353, 0.67643, 0.49356, 0.49989, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30072, "SRR27676311", "SRX23343652", "SRS20205507", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "RNA seq of atf7ip control 3", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 3|id</u><u>:3</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mRNAseq of atf7ip control", "RNA seq of atf7ip control 3", "RNA seq of atf7ip control 3", "mRNAseq of atf7ip control of replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "RNA-seq of atf7ip control_3_R2.fastq.gz.gz RNA-seq of atf7ip control_3_R1.fastq.gz.gz", "fastq fastq", 6742549200.0, 22475164.0, "RNA seq of atf7ip control 3 R1.fastq.gz.gz", "0:150 1:150", "A:1698977237;C:1657996046;G:1800441072;T:1584967439;N:167406", 150, 150, null, null, 1698977237, 1657996046, 1800441072, 1584967439, 167406, "SRX23343652", "SRS20205507", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.96114, 0.9601, 0.05191, 0.05152, 0.69219, 0.69398, 0.48597, 0.48633, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30073, "SRR27676312", "SRX23343651", "SRS20205504", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "RNA seq of atf7ip control 2", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id</u><u>:2</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mRNAseq of atf7ip control", "RNA seq of atf7ip control 2", "RNA seq of atf7ip control 2", "mRNAseq of atf7ip control of replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "RNA-seq of atf7ip control_2_R2.fastq.gz.gz RNA-seq of atf7ip control_2_R1.fastq.gz.gz", "fastq fastq", 6962540400.0, 23208468.0, "RNA seq of atf7ip control 2 R1.fastq.gz.gz", "0:150 1:150", "A:1794934846;C:1640272261;G:1855642638;T:1671491013;N:199642", 150, 150, null, null, 1794934846, 1640272261, 1855642638, 1671491013, 199642, "SRX23343651", "SRS20205504", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.95531, 0.95468, 0.05949, 0.05926, 0.71019, 0.71129, 0.50401, 0.50622, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30074, "SRR27676313", "SRX23343650", "SRS20205503", "SRP485121", "PRJNA1067443", "RNA seq&smart seq&CUT TAG", "PRJNA1067443", "Other", "RNA seq&amp;smart seq&amp;CUT TAG", null, null, null, null, "RNA seq of atf7ip control 1", null, "strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id</u><u>:1</u><u>|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mRNAseq of atf7ip control", "RNA seq of atf7ip control 1", "RNA seq of atf7ip control 1", "mRNAseq of atf7ip control of replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP485121", null, null, "RNA-seq of atf7ip control_1_R1.fastq.gz.gz RNA-seq of atf7ip control_1_R2.fastq.gz.gz", "fastq fastq", 8543359800.0, 28477866.0, "RNA seq of atf7ip control 1 R1.fastq.gz.gz", "0:150 1:150", "A:2200058170;C:2049588985;G:2219737118;T:2073765388;N:210139", 150, 150, null, null, 2200058170, 2049588985, 2219737118, 2073765388, 210139, "SRX23343650", "SRS20205503", "SRA1789215", "East China Normal University|Institute of Biomedical Sciences", "East China Normal University", 2, 0.96026, 0.95618, 0.05646, 0.05613, 0.68424, 0.6856, 0.48963, 0.49334, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-22", "Larval", "Larval", "Blood", "Hematopoietic System"], [30250, "SRR27756860", "SRX23421865", "SRS20276790", "SRP486416", "PRJNA1069604", "Danio rerio strain:TL | breed:Danio rerio Raw sequence reads", "PRJNA1069604", "Other", "To study the effect of a gene deletion in zebrafish", null, null, null, "Model organism or animal sample from danio rerio", "cobll1a", null, "ecotype:missing|dev stage:missing|collection date:2023 02 21|geo loc name:missing|sex:neuter|tissue:FISH|biomaterial provider:missing|z:1000|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Sample A", "1", "1", "common method", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP486416", null, null, "cobll1a1.R2.fq.gz cobll1a1.R1.fq.gz", "fastq fastq", 7119566009.0, 24893517.0, "cobll1a1.R1.fq.gz", "0:143.02 1:142.98", "A:1899718926;C:1652762152;G:1669973661;T:1897092278;N:18992", 143, 142, null, null, 1899718926, 1652762152, 1669973661, 1897092278, 18992, "SRX23421865", "SRS20276790", "SRA1792726", "Hunan Normal University|Hunan Normal University", "Hunan Normal University Hunan Normal University Hunan Normal University", 2, 0.95825, 0.95956, 0.0788, 0.07795, 0.67894, 0.67884, 0.48342, 0.48268, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-29", "Undetermined", "Undetermined", "Undetermined", "Undetermined"], [30251, "SRR27756861", "SRX23421864", "SRS20276789", "SRP486416", "PRJNA1069604", "Danio rerio strain:TL | breed:Danio rerio Raw sequence reads", "PRJNA1069604", "Other", "To study the effect of a gene deletion in zebrafish", null, null, null, "MIMARKS Specimen sample from Danio rerio", "WT", null, "strain:WT|collection date:2023 02 28|depth:missing|elev:missing|env broad scale:missing|env local scale:missing|env medium:missing|geo loc name:missing|isol growth condt:missing|lat lon:missing|BioSampleModel:MIMARKS.specimen|BioSampleModel:MIGS/MIMS/MIMARKS.microbial", null, null, null, null, null, null, null, null, "Sample L", "11", "11", "common method", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP486416", null, null, "tu3.R1.fq.gz tu3.R2.fq.gz", "fastq fastq", 6881670461.0, 24208326.0, "tu3.R1.fq.gz", "0:142.15 1:142.12", "A:1820714788;C:1612866668;G:1629078247;T:1818992861;N:17897", 142, 142, null, null, 1820714788, 1612866668, 1629078247, 1818992861, 17897, "SRX23421864", "SRS20276789", "SRA1792726", "Hunan Normal University|Hunan Normal University", "Hunan Normal University Hunan Normal University Hunan Normal University", 2, 0.95713, 0.95821, 0.07191, 0.07071, 0.67801, 0.67726, 0.48591, 0.48501, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-29", "Undetermined", "Undetermined", "Undetermined", "Undetermined"], [30252, "SRR27756862", "SRX23421863", "SRS20276790", "SRP486416", "PRJNA1069604", "Danio rerio strain:TL | breed:Danio rerio Raw sequence reads", "PRJNA1069604", "Other", "To study the effect of a gene deletion in zebrafish", null, null, null, "Model organism or animal sample from danio rerio", "cobll1a", null, "ecotype:missing|dev stage:missing|collection date:2023 02 21|geo loc name:missing|sex:neuter|tissue:FISH|biomaterial provider:missing|z:1000|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Sample C", "3", "3", "common method", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP486416", null, null, "cobll1a2.R1.fq.gz cobll1a2.R2.fq.gz", "fastq fastq", 6639076778.0, 23213579.0, "cobll1a2.R1.fq.gz", "0:143.02 1:142.98", "A:1799749408;C:1513051586;G:1530064901;T:1796193421;N:17462", 143, 142, null, null, 1799749408, 1513051586, 1530064901, 1796193421, 17462, "SRX23421863", "SRS20276790", "SRA1792726", "Hunan Normal University|Hunan Normal University", "Hunan Normal University Hunan Normal University Hunan Normal University", 2, 0.95695, 0.95781, 0.091, 0.0896, 0.68199, 0.68075, 0.49051, 0.49057, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-29", "Undetermined", "Undetermined", "Undetermined", "Undetermined"], [30253, "SRR27756863", "SRX23421862", "SRS20276790", "SRP486416", "PRJNA1069604", "Danio rerio strain:TL | breed:Danio rerio Raw sequence reads", "PRJNA1069604", "Other", "To study the effect of a gene deletion in zebrafish", null, null, null, "Model organism or animal sample from danio rerio", "cobll1a", null, "ecotype:missing|dev stage:missing|collection date:2023 02 21|geo loc name:missing|sex:neuter|tissue:FISH|biomaterial provider:missing|z:1000|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Sample E", "5", "5", "common method", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP486416", null, null, "cobll1a3.R2.fq.gz cobll1a3.R1.fq.gz", "fastq fastq", 6697695084.0, 23490214.0, "cobll1a3.R1.fq.gz", "0:142.58 1:142.55", "A:1755043056;C:1586242926;G:1602146148;T:1754245480;N:17474", 142, 142, null, null, 1755043056, 1586242926, 1602146148, 1754245480, 17474, "SRX23421862", "SRS20276790", "SRA1792726", "Hunan Normal University|Hunan Normal University", "Hunan Normal University Hunan Normal University Hunan Normal University", 2, 0.96007, 0.96224, 0.06487, 0.06404, 0.66939, 0.66906, 0.48829, 0.48765, 130, 130, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-29", "Undetermined", "Undetermined", "Undetermined", "Undetermined"], [30254, "SRR27756864", "SRX23421861", "SRS20276789", "SRP486416", "PRJNA1069604", "Danio rerio strain:TL | breed:Danio rerio Raw sequence reads", "PRJNA1069604", "Other", "To study the effect of a gene deletion in zebrafish", null, null, null, "MIMARKS Specimen sample from Danio rerio", "WT", null, "strain:WT|collection date:2023 02 28|depth:missing|elev:missing|env broad scale:missing|env local scale:missing|env medium:missing|geo loc name:missing|isol growth condt:missing|lat lon:missing|BioSampleModel:MIMARKS.specimen|BioSampleModel:MIGS/MIMS/MIMARKS.microbial", null, null, null, null, null, null, null, null, "Sample G", "7", "7", "common method", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP486416", null, null, "tu1.R1.fq.gz tu1.R2.fq.gz", "fastq fastq", 7124072376.0, 25020568.0, "tu1.R1.fq.gz", "0:142.38 1:142.35", "A:1889928651;C:1664950324;G:1681768417;T:1887406325;N:18659", 142, 142, null, null, 1889928651, 1664950324, 1681768417, 1887406325, 18659, "SRX23421861", "SRS20276789", "SRA1792726", "Hunan Normal University|Hunan Normal University", "Hunan Normal University Hunan Normal University Hunan Normal University", 2, 0.96032, 0.96145, 0.07398, 0.07359, 0.68503, 0.6843, 0.48524, 0.48933, 116, 116, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-29", "Undetermined", "Undetermined", "Undetermined", "Undetermined"], [30255, "SRR27756865", "SRX23421860", "SRS20276789", "SRP486416", "PRJNA1069604", "Danio rerio strain:TL | breed:Danio rerio Raw sequence reads", "PRJNA1069604", "Other", "To study the effect of a gene deletion in zebrafish", null, null, null, "MIMARKS Specimen sample from Danio rerio", "WT", null, "strain:WT|collection date:2023 02 28|depth:missing|elev:missing|env broad scale:missing|env local scale:missing|env medium:missing|geo loc name:missing|isol growth condt:missing|lat lon:missing|BioSampleModel:MIMARKS.specimen|BioSampleModel:MIGS/MIMS/MIMARKS.microbial", null, null, null, null, null, null, null, null, "Sample J", "9", "9", "common method", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP486416", null, null, "tu2.R1.fq.gz tu2.R2.fq.gz", "fastq fastq", 7024719799.0, 24627933.0, "tu2.R1.fq.gz", "0:142.63 1:142.60", "A:1841519314;C:1662861553;G:1679614735;T:1840705226;N:18971", 142, 142, null, null, 1841519314, 1662861553, 1679614735, 1840705226, 18971, "SRX23421860", "SRS20276789", "SRA1792726", "Hunan Normal University|Hunan Normal University", "Hunan Normal University Hunan Normal University Hunan Normal University", 2, 0.96006, 0.96141, 0.06713, 0.06631, 0.67464, 0.67426, 0.48684, 0.48648, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-01-29", "Undetermined", "Undetermined", "Undetermined", "Undetermined"], [30673, "SRR28233239", "SRX23844453", "SRS20664879", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b01", null, "strain:TRPA1b KO1|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b01", "A1b01", "A1b01", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1b-S1_1.fq.gz A1b-S1_2.fq.gz", "fastq fastq", 10214044500.0, 34046815.0, "A1b S1 1.fq.gz", "0:150 1:150", "A:2826731317;C:2254770618;G:2368382524;T:2764027721;N:132320", 150, 150, null, null, 2826731317, 2254770618, 2368382524, 2764027721, 132320, "SRX23844453", "SRS20664879", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30674, "SRR28233240", "SRX23844452", "SRS20664878", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT23", null, "strain:WT9|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT23", "WT23", "WT23", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-2-3_R1.fq.gz WT-2-3_R2.fq.gz", "fastq fastq", 6168655800.0, 20562186.0, "WT 2 3 R1.fq.gz", "0:150 1:150", "A:1556231017;C:1526432275;G:1545153210;T:1540414611;N:424687", 150, 150, null, null, 1556231017, 1526432275, 1545153210, 1540414611, 424687, "SRX23844452", "SRS20664878", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30675, "SRR28233241", "SRX23844451", "SRS20664877", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT22", null, "strain:WT8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT22", "WT22", "WT22", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-2-2_R1.fq.gz WT-2-2_R2.fq.gz", "fastq fastq", 6503274900.0, 21677583.0, "WT 2 2 R1.fq.gz", "0:150 1:150", "A:1677274145;C:1574139629;G:1591639511;T:1659773624;N:447991", 150, 150, null, null, 1677274145, 1574139629, 1591639511, 1659773624, 447991, "SRX23844451", "SRS20664877", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30676, "SRR28233242", "SRX23844450", "SRS20664876", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT21", null, "strain:WT7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT21", "WT21", "WT21", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-2-1_R1.fq.gz WT-2-1_R2.fq.gz", "fastq fastq", 6617487600.0, 22058292.0, "WT 2 1 R1.fq.gz", "0:150 1:150", "A:1701231328;C:1606849699;G:1625342674;T:1683607145;N:456754", 150, 150, null, null, 1701231328, 1606849699, 1625342674, 1683607145, 456754, "SRX23844450", "SRS20664876", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30677, "SRR28233243", "SRX23844449", "SRS20664875", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT13", null, "strain:WT6|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT13", "WT13", "WT13", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-1-3_R1.fq.gz WT-1-3_R2.fq.gz", "fastq fastq", 7102153500.0, 23673845.0, "WT 1 3 R1.fq.gz", "0:150 1:150", "A:1842496944;C:1707310744;G:1727403195;T:1824440904;N:501713", 150, 150, null, null, 1842496944, 1707310744, 1727403195, 1824440904, 501713, "SRX23844449", "SRS20664875", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30678, "SRR28233244", "SRX23844448", "SRS20664874", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT12", null, "strain:WT5|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT12", "WT12", "WT12", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-1-2_R1.fq.gz WT-1-2_R2.fq.gz", "fastq fastq", 6904290900.0, 23014303.0, "WT 1 2 R1.fq.gz", "0:150 1:150", "A:1794495968;C:1655549612;G:1677906470;T:1775860400;N:478450", 150, 150, null, null, 1794495968, 1655549612, 1677906470, 1775860400, 478450, "SRX23844448", "SRS20664874", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30679, "SRR28233245", "SRX23844447", "SRS20664873", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT11", null, "strain:WT4|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT11", "WT11", "WT11", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-1-1_R1.fq.gz WT-1-1_R2.fq.gz", "fastq fastq", 7005297000.0, 23350990.0, "WT 1 1 R1.fq.gz", "0:150 1:150", "A:1812285786;C:1684304098;G:1717096826;T:1791123167;N:487123", 150, 150, null, null, 1812285786, 1684304098, 1717096826, 1791123167, 487123, "SRX23844447", "SRS20664873", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30680, "SRR28233246", "SRX23844446", "SRS20664872", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT03", null, "strain:WT3|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT03", "WT03", "WT03", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-S3_1.fq.gz WT-S3_2.fq.gz", "fastq fastq", 5014921200.0, 16716404.0, "WT S3 1.fq.gz", "0:150 1:150", "A:1376105590;C:1123924635;G:1152769107;T:1361994867;N:127001", 150, 150, null, null, 1376105590, 1123924635, 1152769107, 1361994867, 127001, "SRX23844446", "SRS20664872", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30681, "SRR28233247", "SRX23844445", "SRS20664871", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b23", null, "strain:TRPA1b KO9|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b23", "A1b23", "A1b23", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1-2-3_R1.fq.gz A1-2-3_R2.fq.gz", "fastq fastq", 6844595700.0, 22815319.0, "A1 2 3 R1.fq.gz", "0:150 1:150", "A:1778935800;C:1644607281;G:1662211377;T:1758352025;N:489217", 150, 150, null, null, 1778935800, 1644607281, 1662211377, 1758352025, 489217, "SRX23844445", "SRS20664871", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30682, "SRR28233248", "SRX23844444", "SRS20664870", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b22", null, "strain:TRPA1b KO8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b22", "A1b22", "A1b22", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1-2-2_R1.fq.gz A1-2-2_R2.fq.gz", "fastq fastq", 6529918800.0, 21766396.0, "A1 2 2 R1.fq.gz", "0:150 1:150", "A:1681524014;C:1580514490;G:1605344761;T:1662085103;N:450432", 150, 150, null, null, 1681524014, 1580514490, 1605344761, 1662085103, 450432, "SRX23844444", "SRS20664870", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30683, "SRR28233249", "SRX23844443", "SRS20664869", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b21", null, "strain:TRPA1b KO7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b21", "A1b21", "A1b21", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1-2-1_R1.fq.gz A1-2-1_R2.fq.gz", "fastq fastq", 6836499600.0, 22788332.0, "A1 2 1 R1.fq.gz", "0:150 1:150", "A:1769098120;C:1648663116;G:1667962343;T:1750293771;N:482250", 150, 150, null, null, 1769098120, 1648663116, 1667962343, 1750293771, 482250, "SRX23844443", "SRS20664869", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30684, "SRR28233250", "SRX23844442", "SRS20664868", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b13", null, "strain:TRPA1b KO6|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b13", "A1b13", "A1b13", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1-1-3_R1.fq.gz A1-1-3_R2.fq.gz", "fastq fastq", 7024153800.0, 23413846.0, "A1 1 3 R1.fq.gz", "0:150 1:150", "A:1803658498;C:1704926954;G:1731475860;T:1783603775;N:488713", 150, 150, null, null, 1803658498, 1704926954, 1731475860, 1783603775, 488713, "SRX23844442", "SRS20664868", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30685, "SRR28233251", "SRX23844441", "SRS20664867", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b12", null, "strain:TRPA1b KO5|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b12", "A1b12", "A1b12", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1-1-2_R1.fq.gz A1-1-2_R2.fq.gz", "fastq fastq", 6764278200.0, 22547594.0, "A1 1 2 R1.fq.gz", "0:150 1:150", "A:1765465821;C:1610874768;G:1638217652;T:1749259791;N:460168", 150, 150, null, null, 1765465821, 1610874768, 1638217652, 1749259791, 460168, "SRX23844441", "SRS20664867", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30686, "SRR28233252", "SRX23844440", "SRS20664866", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b11", null, "strain:TRPA1b KO4|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b11", "A1b11", "A1b11", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1-1-1_R1.fq.gz A1-1-1_R2.fq.gz", "fastq fastq", 7001419800.0, 23338066.0, "A1 1 1 R1.fq.gz", "0:150 1:150", "A:1755052093;C:1727552789;G:1786513789;T:1731804911;N:496218", 150, 150, null, null, 1755052093, 1727552789, 1786513789, 1731804911, 496218, "SRX23844440", "SRS20664866", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30687, "SRR28233253", "SRX23844439", "SRS20664865", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b03", null, "strain:TRPA1b KO3|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b03", "A1b03", "A1b03", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1b-S3_1.fq.gz A1b-S3_2.fq.gz", "fastq fastq", 6656319000.0, 22187730.0, "A1b S3 1.fq.gz", "0:150 1:150", "A:1836354615;C:1486285665;G:1534973763;T:1798492449;N:212508", 150, 150, null, null, 1836354615, 1486285665, 1534973763, 1798492449, 212508, "SRX23844439", "SRS20664865", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30688, "SRR28233254", "SRX23844438", "SRS20664864", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "A1b02", null, "strain:TRPA1b KO2|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "A1b02", "A1b02", "A1b02", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "A1b-S2_1.fq.gz A1b-S2_2.fq.gz", "fastq fastq", 12350635200.0, 41168784.0, "A1b S2 1.fq.gz", "0:150 1:150", "A:3393503091;C:2740767056;G:2872562559;T:3343736443;N:66051", 150, 150, null, null, 3393503091, 2740767056, 2872562559, 3343736443, 66051, "SRX23844438", "SRS20664864", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30689, "SRR28233255", "SRX23844437", "SRS20664863", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT02", null, "strain:WT2|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT02", "WT02", "WT02", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-S2_1.fq.gz WT-S2_2.fq.gz", "fastq fastq", 6740391600.0, 22467972.0, "WT S2 1.fq.gz", "0:150 1:150", "A:1839600016;C:1523127157;G:1552667106;T:1824551017;N:446304", 150, 150, null, null, 1839600016, 1523127157, 1552667106, 1824551017, 446304, "SRX23844437", "SRS20664863", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30690, "SRR28233256", "SRX23844436", "SRS20664862", "SRP493528", "PRJNA1084193", "Knockout transcriptome sequencing of TRPA1b gene in zebrafish", "PRJNA1084193", "Other", "WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.", null, null, null, null, "WT01", null, "strain:WT1|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "WT01", "WT01", "WT01", "ribonucleic acid", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq X Plus", null, "SRP493528", null, null, "WT-S1_1.fq.gz WT-S1_2.fq.gz", "fastq fastq", 7104288900.0, 23680963.0, "WT S1 1.fq.gz", "0:150 1:150", "A:1946897695;C:1592125410;G:1641002833;T:1923739782;N:523180", 150, 150, null, null, 1946897695, 1592125410, 1641002833, 1923739782, 523180, "SRX23844436", "SRS20664862", "SRA1818205", "Shanghai Ocean University|College of Aquaculture and Life Sciences", "Shanghai Ocean University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-06", "Adult", "Adult", "Gill", "Respiratory System"], [30702, "SRR28328136", "SRX23936571", "SRS20740255", "SRP494948", "PRJNA1086823", "Danio rerio Raw sequence reads", "PRJNA1086823", "Whole Genome Sequencing", "Study the effects on the body when this gene is lost", null, null, "Study the effects on the body when this gene is lost", "Model organism or animal sample from Danio rerio", "tu ", null, "strain:FISH|age:2|collection date:2023 02 28|geo loc name:missing|sex:missing|tissue:missing|biomaterial provider:missing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "SampleF", "6", "6", "control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP494948", null, null, "tu_3.R1.raw.fastq.gz tu_3.R2.raw.fastq.gz", "fastq fastq", 6836795894.0, 22638397.0, "tu 3.R1.raw.fastq.gz", "0:151 1:151", "A:1911756035;C:1496221872;G:1563235044;T:1865509810;N:73133", 151, 151, null, null, 1911756035, 1496221872, 1563235044, 1865509810, 73133, "SRX23936571", "SRS20740255", "SRA1823374", "Hunan Normal University|Hunan Normal University", "Hunan Normal University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-13", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [30703, "SRR28328137", "SRX23936570", "SRS20740255", "SRP494948", "PRJNA1086823", "Danio rerio Raw sequence reads", "PRJNA1086823", "Whole Genome Sequencing", "Study the effects on the body when this gene is lost", null, null, "Study the effects on the body when this gene is lost", "Model organism or animal sample from Danio rerio", "tu ", null, "strain:FISH|age:2|collection date:2023 02 28|geo loc name:missing|sex:missing|tissue:missing|biomaterial provider:missing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "SampleE", "5", "5", "control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP494948", null, null, "tu_2.R1.raw.fastq.gz tu_2.R2.raw.fastq.gz", "fastq fastq", 6933313282.0, 22957991.0, "tu 2.R1.raw.fastq.gz", "0:151 1:151", "A:1895897966;C:1562896362;G:1633152399;T:1841286721;N:79834", 151, 151, null, null, 1895897966, 1562896362, 1633152399, 1841286721, 79834, "SRX23936570", "SRS20740255", "SRA1823374", "Hunan Normal University|Hunan Normal University", "Hunan Normal University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-13", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [30704, "SRR28328138", "SRX23936569", "SRS20740255", "SRP494948", "PRJNA1086823", "Danio rerio Raw sequence reads", "PRJNA1086823", "Whole Genome Sequencing", "Study the effects on the body when this gene is lost", null, null, "Study the effects on the body when this gene is lost", "Model organism or animal sample from Danio rerio", "tu ", null, "strain:FISH|age:2|collection date:2023 02 28|geo loc name:missing|sex:missing|tissue:missing|biomaterial provider:missing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "SampleD", "4", "4", "control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP494948", null, null, "tu_1.R1.raw.fastq.gz tu_1.R2.raw.fastq.gz", "fastq fastq", 6953463930.0, 23024715.0, "tu 1.R1.raw.fastq.gz", "0:151 1:151", "A:1914281996;C:1558685345;G:1630355775;T:1850061551;N:79263", 151, 151, null, null, 1914281996, 1558685345, 1630355775, 1850061551, 79263, "SRX23936569", "SRS20740255", "SRA1823374", "Hunan Normal University|Hunan Normal University", "Hunan Normal University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-13", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [30705, "SRR28328139", "SRX23936568", "SRS20740254", "SRP494948", "PRJNA1086823", "Danio rerio Raw sequence reads", "PRJNA1086823", "Whole Genome Sequencing", "Study the effects on the body when this gene is lost", null, null, "Study the effects on the body when this gene is lost", "Model organism or animal sample from Danio rerio", "myo7aa", null, "strain:FISH|age:2|collection date:2023 02 28|geo loc name:missing|sex:missing|tissue:missing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "SampleC", "3", "3", "treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP494948", null, null, "myo7aa_3.R1.raw.fastq.gz myo7aa_3.R2.raw.fastq.gz", "fastq fastq", 6793366180.0, 22494590.0, "myo7aa 3.R1.raw.fastq.gz", "0:151 1:151", "A:1786353133;C:1602317410;G:1674855786;T:1729822151;N:17700", 151, 151, null, null, 1786353133, 1602317410, 1674855786, 1729822151, 17700, "SRX23936568", "SRS20740254", "SRA1823374", "Hunan Normal University|Hunan Normal University", "Hunan Normal University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-13", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [30706, "SRR28328140", "SRX23936567", "SRS20740254", "SRP494948", "PRJNA1086823", "Danio rerio Raw sequence reads", "PRJNA1086823", "Whole Genome Sequencing", "Study the effects on the body when this gene is lost", null, null, "Study the effects on the body when this gene is lost", "Model organism or animal sample from Danio rerio", "myo7aa", null, "strain:FISH|age:2|collection date:2023 02 28|geo loc name:missing|sex:missing|tissue:missing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "SampleB", "2", "2", "treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP494948", null, null, "myo7aa_2.R1.raw.fastq.gz myo7aa_2.R2.raw.fastq.gz", "fastq fastq", 6762797438.0, 22393369.0, "myo7aa 2.R1.raw.fastq.gz", "0:151 1:151", "A:1816704062;C:1557768239;G:1627373716;T:1760926609;N:24812", 151, 151, null, null, 1816704062, 1557768239, 1627373716, 1760926609, 24812, "SRX23936567", "SRS20740254", "SRA1823374", "Hunan Normal University|Hunan Normal University", "Hunan Normal University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-13", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [30707, "SRR28328141", "SRX23936566", "SRS20740254", "SRP494948", "PRJNA1086823", "Danio rerio Raw sequence reads", "PRJNA1086823", "Whole Genome Sequencing", "Study the effects on the body when this gene is lost", null, null, "Study the effects on the body when this gene is lost", "Model organism or animal sample from Danio rerio", "myo7aa", null, "strain:FISH|age:2|collection date:2023 02 28|geo loc name:missing|sex:missing|tissue:missing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "SampleA", "1", "1", "treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP494948", null, null, "myo7aa_1.R1.raw.fastq.gz myo7aa_1.R2.raw.fastq.gz", "fastq fastq", 6605710628.0, 21873214.0, "myo7aa 1.R1.raw.fastq.gz", "0:151 1:151", "A:1728796843;C:1565920605;G:1629477870;T:1681497978;N:17332", 151, 151, null, null, 1728796843, 1565920605, 1629477870, 1681497978, 17332, "SRX23936566", "SRS20740254", "SRA1823374", "Hunan Normal University|Hunan Normal University", "Hunan Normal University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-13", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [31530, "SRR28467112", "SRX24070103", "SRS20860625", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPM 1", null, "strain:AB Wild type|isolate:Zebrafish of BPM treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPM 1", "ZXY BPM 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM1.raw_2.fastq.gz BPM1.raw_1.fastq.gz", "fastq fastq", 9394450800.0, 31314836.0, "BPM1.raw 1.fastq.gz", "0:150 1:150", "A:2554382711;C:2098883579;G:2207645797;T:2533462469;N:76244", 150, 150, null, null, 2554382711, 2098883579, 2207645797, 2533462469, 76244, "SRX24070103", "SRS20860625", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94127, 0.93972, 0.1164, 0.11723, 0.67308, 0.67673, 0.49857, 0.50613, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31531, "SRR28467113", "SRX24070102", "SRS20860624", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 3", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 3", "ZXY BPG 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG3.raw_1.fastq.gz BPG3.raw_2.fastq.gz", "fastq fastq", 10077237000.0, 33590790.0, "BPG3.raw 1.fastq.gz", "0:150 1:150", "A:2739033278;C:2249842624;G:2379133275;T:2709150044;N:77779", 150, 150, null, null, 2739033278, 2249842624, 2379133275, 2709150044, 77779, "SRX24070102", "SRS20860624", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94306, 0.94056, 0.10748, 0.10702, 0.67653, 0.67986, 0.5156, 0.50914, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31532, "SRR28467114", "SRX24070101", "SRS20860623", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 2", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 2", "ZXY BPG 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG2.raw_2.fastq.gz BPG2.raw_1.fastq.gz", "fastq fastq", 9510942300.0, 31703141.0, "BPG2.raw 1.fastq.gz", "0:150 1:150", "A:2596352503;C:2120752906;G:2233383807;T:2560375232;N:77852", 150, 150, null, null, 2596352503, 2120752906, 2233383807, 2560375232, 77852, "SRX24070101", "SRS20860623", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94667, 0.94269, 0.10626, 0.10688, 0.67533, 0.68081, 0.49483, 0.49423, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31533, "SRR28467115", "SRX24070100", "SRS20860622", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPG 1", null, "strain:AB Wild type|isolate:Zebrafish of BPG treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPG 1", "ZXY BPG 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPG1.raw_1.fastq.gz BPG1.raw_2.fastq.gz", "fastq fastq", 13070106300.0, 43567021.0, "BPG1.raw 1.fastq.gz", "0:150 1:150", "A:3534452437;C:2939996996;G:3085563305;T:3509989820;N:103742", 150, 150, null, null, 3534452437, 2939996996, 3085563305, 3509989820, 103742, "SRX24070100", "SRS20860622", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9438, 0.94084, 0.10523, 0.10522, 0.67829, 0.68073, 0.49381, 0.49067, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31534, "SRR28467116", "SRX24070099", "SRS20860621", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 3", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 3", "ZXY BPA 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA3.raw_2.fastq.gz BPA3.raw_1.fastq.gz", "fastq fastq", 10411684500.0, 34705615.0, "BPA3.raw 1.fastq.gz", "0:150 1:150", "A:2832043862;C:2321319365;G:2455663475;T:2802571018;N:86780", 150, 150, null, null, 2832043862, 2321319365, 2455663475, 2802571018, 86780, "SRX24070099", "SRS20860621", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94457, 0.94104, 0.11054, 0.10975, 0.66994, 0.67318, 0.51406, 0.50942, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31535, "SRR28467117", "SRX24070098", "SRS20860620", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 2", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 2", "ZXY BPA 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA2.raw_1.fastq.gz BPA2.raw_2.fastq.gz", "fastq fastq", 9661415100.0, 32204717.0, "BPA2.raw 1.fastq.gz", "0:150 1:150", "A:2627401085;C:2157294589;G:2278953763;T:2597686452;N:79211", 150, 150, null, null, 2627401085, 2157294589, 2278953763, 2597686452, 79211, "SRX24070098", "SRS20860620", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9432, 0.94024, 0.10905, 0.10878, 0.67304, 0.6775, 0.50281, 0.50407, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31536, "SRR28467118", "SRX24070097", "SRS20860619", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPA 1", null, "strain:AB Wild type|isolate:Zebrafish of BPA treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPA 1", "ZXY BPA 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPA1.raw_1.fastq.gz BPA1.raw_2.fastq.gz", "fastq fastq", 9717716400.0, 32392388.0, "BPA1.raw 1.fastq.gz", "0:150 1:150", "A:2650893145;C:2181496527;G:2254888972;T:2630357805;N:79951", 150, 150, null, null, 2650893145, 2181496527, 2254888972, 2630357805, 79951, "SRX24070097", "SRS20860619", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94789, 0.94422, 0.10681, 0.1065, 0.66833, 0.67377, 0.50841, 0.5025, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31537, "SRR28467119", "SRX24070096", "SRS20860618", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 3", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 3", "ZXY CK 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control3.raw_1.fastq.gz Control3.raw_2.fastq.gz", "fastq fastq", 8827093200.0, 29423644.0, "Control3.raw 1.fastq.gz", "0:150 1:150", "A:2394211757;C:1989274047;G:2061489648;T:2382044834;N:72914", 150, 150, null, null, 2394211757, 1989274047, 2061489648, 2382044834, 72914, "SRX24070096", "SRS20860618", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94786, 0.9448, 0.10432, 0.10422, 0.67221, 0.67383, 0.51187, 0.50251, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31538, "SRR28467120", "SRX24070095", "SRS20860617", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 3", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 3", "ZXY BPTMC 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC3.raw_1.fastq.gz BPTMC3.raw_2.fastq.gz", "fastq fastq", 10073599500.0, 33578665.0, "BPTMC3.raw 1.fastq.gz", "0:150 1:150", "A:2703808743;C:2256806609;G:2438554304;T:2674346802;N:83042", 150, 150, null, null, 2703808743, 2256806609, 2438554304, 2674346802, 83042, "SRX24070095", "SRS20860617", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94379, 0.89251, 0.09996, 0.09437, 0.67961, 0.68976, 0.50126, 0.51462, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31539, "SRR28467121", "SRX24070094", "SRS20860616", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 2", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 2", "ZXY BPTMC 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC2.raw_1.fastq.gz BPTMC2.raw_2.fastq.gz", "fastq fastq", 9429771000.0, 31432570.0, "BPTMC2.raw 1.fastq.gz", "0:150 1:150", "A:2563993022;C:2099927909;G:2215282718;T:2550488919;N:78432", 150, 150, null, null, 2563993022, 2099927909, 2215282718, 2550488919, 78432, "SRX24070094", "SRS20860616", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94015, 0.93845, 0.11202, 0.11225, 0.68142, 0.68426, 0.50947, 0.46648, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31540, "SRR28467122", "SRX24070093", "SRS20860615", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPTMC 1", null, "strain:AB Wild type|isolate:Zebrafish of BPTMC treatment group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPTMC 1", "ZXY BPTMC 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPTMC1.raw_1.fastq.gz BPTMC1.raw_2.fastq.gz", "fastq fastq", 10306275300.0, 34354251.0, "BPTMC1.raw 1.fastq.gz", "0:150 1:150", "A:2813926642;C:2292771191;G:2419432993;T:2780059784;N:84690", 150, 150, null, null, 2813926642, 2292771191, 2419432993, 2780059784, 84690, "SRX24070093", "SRS20860615", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9416, 0.93867, 0.11422, 0.11418, 0.68018, 0.6856, 0.48529, 0.48762, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31541, "SRR28467123", "SRX24070092", "SRS20860614", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPM 3", null, "strain:AB Wild type|isolate:Zebrafish of BPM treatment group 3|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPM 3", "ZXY BPM 3", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM3.raw_1.fastq.gz BPM3.raw_2.fastq.gz", "fastq fastq", 9935041500.0, 33116805.0, "BPM3.raw 1.fastq.gz", "0:150 1:150", "A:2699556183;C:2237493304;G:2314599682;T:2683312551;N:79780", 150, 150, null, null, 2699556183, 2237493304, 2314599682, 2683312551, 79780, "SRX24070092", "SRS20860614", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94795, 0.94397, 0.10579, 0.10508, 0.67304, 0.67614, 0.48977, 0.49037, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31542, "SRR28467124", "SRX24070091", "SRS20860613", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "BPM 2", null, "strain:AB Wild type|isolate:Zebrafish of BPM treatment group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY BPM 2", "ZXY BPM 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "BPM2.raw_1.fastq.gz BPM2.raw_2.fastq.gz", "fastq fastq", 8645715900.0, 28819053.0, "BPM2.raw 1.fastq.gz", "0:150 1:150", "A:2370941492;C:1921770882;G:2002106055;T:2350824859;N:72612", 150, 150, null, null, 2370941492, 1921770882, 2002106055, 2350824859, 72612, "SRX24070091", "SRS20860613", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94303, 0.93986, 0.1216, 0.12095, 0.67154, 0.67385, 0.4964, 0.49763, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31543, "SRR28467125", "SRX24070090", "SRS20860612", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 2", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 2|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 2", "ZXY CK 2", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control2.raw_1.fastq.gz Control2.raw_2.fastq.gz", "fastq fastq", 8728743900.0, 29095813.0, "Control2.raw 1.fastq.gz", "0:150 1:150", "A:2347809691;C:1937189854;G:2127437851;T:2316234453;N:72051", 150, 150, null, null, 2347809691, 1937189854, 2127437851, 2316234453, 72051, "SRX24070090", "SRS20860612", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.94052, 0.93739, 0.10645, 0.10488, 0.67915, 0.68377, 0.51064, 0.50924, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [31544, "SRR28467126", "SRX24070089", "SRS20860611", "SRP498043", "PRJNA1091388", "Danio rerio Raw sequence reads", "PRJNA1091388", "Whole Genome Sequencing", "normal RNA seq of Danio rerio", null, null, null, null, "Control 1", null, "strain:AB Wild type|isolate:Zebrafish of blank control group 1|breed:no collected|cultivar:no collected|ecotype:Nanjing|age:5 dpf stage:larval fish|collection date:2023 02|geo loc name:China: Nanjing|sex:not applicable|tissue:the whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Zebrafish larvae", "ZXY CK 1", "ZXY CK 1", "Total RNA was isolated and purified from zebrafish roe tissues using TRIzol reagent.RNA quantity and purity were quantified using an ultra micro spectrophotometer  and agarose gel electrophoresis was used to avoid alteration of RNA integrity and purity. RNA and DNA were quantified using the Qubit 2.0 RNA and Qubit 2.0 DNA kits. Subsequently  the extracted RNA was transformed to construct cDNA sequencing libraries using the TrueLib mRNA Library Prep Kit for Illumina. post quantification and pooling of cDNA using AgilentBioAnalyzer 2100  sequencing was performed on NovaSeq 6000. The quality of sequencing data was assessed and low quality sequences were filtered by FastQC 0.11.9 and Trimmomatic 0.32. Filtered sequenced sequences were aligned with the zebrafish reference genome using HiSAT2 2.2.1  and finally transcripts were analyzed for gene expression levels by StringTie software", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP498043", null, null, "Control1.raw_1.fastq.gz Control1.raw_2.fastq.gz", "fastq fastq", 13197587400.0, 43991958.0, "Control1.raw 1.fastq.gz", "0:150 1:150", "A:3499966481;C:3072967049;G:3152583762;T:3471963983;N:106125", 150, 150, null, null, 3499966481, 3072967049, 3152583762, 3471963983, 106125, "SRX24070089", "SRS20860611", "SRA1834298", "Chinese Academy of Agricultural Sciences|Institute of Quality Standards and Testing Technol", "Chinese Academy of Agricultural Sciences", 2, 0.9548, 0.95216, 0.08791, 0.08792, 0.66841, 0.67241, 0.48738, 0.48068, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-03-27", "Larval", "Larval", "Trunk", "Surface Structure"], [32362, "SRR29157958", "SRX24679082", "SRS21413713", "SRP509709", "PRJNA1115529", "Danio rerio Raw sequence reads of gonadal tissue", "PRJNA1115529", "Whole Genome Sequencing", "Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected", null, null, "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary", "Model organism or animal sample from Danio rerio", "Ovary NPX", null, "strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "zebrafish ovary RNA seq from NPX", "Ovary NPX", "Ovary NPX", "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP509709", null, null, "H4_2.fq.gz H4_1.fq.gz H3_2.fq.gz H3_1.fq.gz H2_2.fq.gz H2_1.fq.gz H1_2.fq.gz H1_1.fq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 37288126200.0, 124293754.0, "H1 1.fq.gz", "0:150 1:150", "A:9870906480;C:8895442858;G:8761667172;T:9759826428;N:283262", 150, 150, null, null, 9870906480, 8895442858, 8761667172, 9759826428, 283262, "SRX24679082", "SRS21413713", "SRA1876810", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research", 2, 0.93451, 0.93482, 0.01992, 0.01985, 0.75966, 0.75943, 0.45469, 0.4556, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Portugal", "2024-05-24", "Adult", "Adult", "Gonad", "Reproductive System"], [32363, "SRR29157959", "SRX24679081", "SRS21413712", "SRP509709", "PRJNA1115529", "Danio rerio Raw sequence reads of gonadal tissue", "PRJNA1115529", "Whole Genome Sequencing", "Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected", null, null, "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary", "Model organism or animal sample from Danio rerio", "Ovary Ctrl", null, "strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "zebrafish ovary RNA seq from Control", "Ovary CTRL", "Ovary CTRL", "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP509709", null, null, "D4_2.fq.gz D4_1.fq.gz D3_2.fq.gz D3_1.fq.gz D2_2.fq.gz D2_1.fq.gz D1_2.fq.gz D1_1.fq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 48240351600.0, 160801172.0, "D1 1.fq.gz", "0:150 1:150", "A:12507813252;C:11711256340;G:11706267844;T:12313668932;N:1345232", 150, 150, null, null, 12507813252, 11711256340, 11706267844, 12313668932, 1345232, "SRX24679081", "SRS21413712", "SRA1876810", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research", 2, 0.93217, 0.93303, 0.01595, 0.01634, 0.75948, 0.75998, 0.46158, 0.46061, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Portugal", "2024-05-24", "Adult", "Adult", "Gonad", "Reproductive System"], [32364, "SRR29157960", "SRX24679080", "SRS21413711", "SRP509709", "PRJNA1115529", "Danio rerio Raw sequence reads of gonadal tissue", "PRJNA1115529", "Whole Genome Sequencing", "Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected", null, null, "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish testis", "Model organism or animal sample from Danio rerio", "Testis NPX", null, "strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "zebrafish testis RNA seq from NPX", "Testis NPX", "Testis NPX", "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP509709", null, null, "G4_2.fq.gz G4_1.fq.gz G3_2.fq.gz G3_1.fq.gz G2_2.fq.gz G2_1.fq.gz G1_2.fq.gz G1_1.fq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 48293186700.0, 160977289.0, "G1 1.fq.gz", "0:150 1:150", "A:12737664564;C:11515099418;G:11506913376;T:12532403181;N:1106161", 150, 150, null, null, 12737664564, 11515099418, 11506913376, 12532403181, 1106161, "SRX24679080", "SRS21413711", "SRA1876810", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research", 2, 0.93531, 0.93628, 0.04883, 0.04847, 0.66707, 0.66728, 0.47213, 0.47226, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Portugal", "2024-05-24", "Adult", "Adult", "Gonad", "Reproductive System"], [32365, "SRR29157961", "SRX24679079", "SRS21413710", "SRP509709", "PRJNA1115529", "Danio rerio Raw sequence reads of gonadal tissue", "PRJNA1115529", "Whole Genome Sequencing", "Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected", null, null, "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis", "Model organism or animal sample from Danio rerio", "Testis CTRL", null, "strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "zebrafish testis RNA seq from Control", "Testis CTRL", "Testis CTRL", "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP509709", null, null, "C4_2.fq.gz C4_1.fq.gz C3_2.fq.gz C3_1.fq.gz C2_2.fq.gz C2_1.fq.gz C1_2.fq.gz C1_1.fq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 47457731100.0, 158192437.0, "C1 1.fq.gz", "0:150 1:150", "A:12817545225;C:10993554835;G:10941137146;T:12704995076;N:498818", 150, 150, null, null, 12817545225, 10993554835, 10941137146, 12704995076, 498818, "SRX24679079", "SRS21413710", "SRA1876810", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research", 2, 0.93023, 0.9282, 0.0889, 0.08851, 0.63106, 0.63098, 0.4869, 0.48618, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Portugal", "2024-05-24", "Adult", "Adult", "Gonad", "Reproductive System"], [32476, "SRR29270149", "SRX24787634", "SRS21505104", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Mut 20 1", null, "strain:AB|age:20|collection date:2023 06 10|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Mut 20 1", "E10", "E10", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Mut-20-1_S162_R1.fastq.gz foxl2l_Mut-20-1_S162_R2.fastq.gz", "fastq fastq", 8940963680.0, 29605840.0, "foxl2l Mut 20 1 S162 R1.fastq.gz", "0:151 1:151", "A:2232167098;C:2229744850;G:2271326718;T:2207692629;N:32385", 151, 151, null, null, 2232167098, 2229744850, 2271326718, 2207692629, 32385, "SRX24787634", "SRS21505104", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"], [32477, "SRR29270150", "SRX24787633", "SRS21505103", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Het 20 3", null, "strain:AB|age:20|collection date:2023 06 09|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Het 20 3", "E9", "E9", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Het-20-3_S161_R1.fastq.gz foxl2l_Het-20-3_S161_R2.fastq.gz", "fastq fastq", 7038409282.0, 23305991.0, "foxl2l Het 20 3 S161 R1.fastq.gz", "0:151 1:151", "A:1766863186;C:1740008639;G:1787471686;T:1744039429;N:26342", 151, 151, null, null, 1766863186, 1740008639, 1787471686, 1744039429, 26342, "SRX24787633", "SRS21505103", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"], [32478, "SRR29270151", "SRX24787632", "SRS21505102", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Het 20 2", null, "strain:AB|age:20|collection date:2023 06 08|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Het 20 2", "E8", "E8", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Het-20-2_S160_R1.fastq.gz foxl2l_Het-20-2_S160_R2.fastq.gz", "fastq fastq", 6772505832.0, 22425516.0, "foxl2l Het 20 2 S160 R1.fastq.gz", "0:151 1:151", "A:1704124986;C:1673138074;G:1713003931;T:1682214009;N:24832", 151, 151, null, null, 1704124986, 1673138074, 1713003931, 1682214009, 24832, "SRX24787632", "SRS21505102", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"], [32479, "SRR29270152", "SRX24787631", "SRS21505101", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Het 20 1", null, "strain:AB|age:20|collection date:2023 06 07|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Het 20 1", "E7", "E7", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Het-20-1_S159_R1.fastq.gz foxl2l_Het-20-1_S159_R2.fastq.gz", "fastq fastq", 11685740812.0, 38694506.0, "foxl2l Het 20 1 S159 R1.fastq.gz", "0:151 1:151", "A:2939618668;C:2888861085;G:2958173208;T:2899044704;N:43147", 151, 151, null, null, 2939618668, 2888861085, 2958173208, 2899044704, 43147, "SRX24787631", "SRS21505101", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"], [32480, "SRR29270153", "SRX24787630", "SRS21505100", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Mut 15 3", null, "strain:AB|age:15|collection date:2023 06 06|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Mut 15 3", "E6", "E6", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Mut-15-3_S158_R1.fastq.gz foxl2l_Mut-15-3_S158_R2.fastq.gz", "fastq fastq", 9503789604.0, 31469502.0, "foxl2l Mut 15 3 S158 R1.fastq.gz", "0:151 1:151", "A:2393052443;C:2340958111;G:2411502428;T:2358240313;N:36309", 151, 151, null, null, 2393052443, 2340958111, 2411502428, 2358240313, 36309, "SRX24787630", "SRS21505100", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"], [32481, "SRR29270154", "SRX24787629", "SRS21505099", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Mut 15 2", null, "strain:AB|age:15|collection date:2023 06 05|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Mut 15 2", "E5", "E5", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Mut-15-2_S157_R1.fastq.gz foxl2l_Mut-15-2_S157_R2.fastq.gz", "fastq fastq", 7416837026.0, 24559063.0, "foxl2l Mut 15 2 S157 R1.fastq.gz", "0:151 1:151", "A:1865711045;C:1830489703;G:1881612508;T:1838995980;N:27790", 151, 151, null, null, 1865711045, 1830489703, 1881612508, 1838995980, 27790, "SRX24787629", "SRS21505099", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"], [32482, "SRR29270155", "SRX24787628", "SRS21505098", "SRP511487", "PRJNA1119569", "RNA seq of zebrafish foxl2l mutant", "PRJNA1119569", "Other", "Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.", null, null, null, null, "foxl2l Mut 15 1", null, "strain:AB|age:15|collection date:2023 06 04|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "foxl2l Mut 15 1", "E4", "E4", "50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme  NR604 01", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP511487", null, null, "foxl2l_Mut-15-1_S156_R1.fastq.gz foxl2l_Mut-15-1_S156_R2.fastq.gz", "fastq fastq", 7092721868.0, 23485834.0, "foxl2l Mut 15 1 S156 R1.fastq.gz", "0:151 1:151", "A:1764166761;C:1770534219;G:1820397492;T:1737597123;N:26273", 151, 151, null, null, 1764166761, 1770534219, 1820397492, 1737597123, 26273, "SRX24787628", "SRS21505098", "SRA1887976", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "China", "2024-06-03", "Undetermined", "Undetermined", "Gonad", "Reproductive System"]], "truncated": false, "filtered_table_rows_count": 1008, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"experiment.library_source\" = :p1 and \"experiment.library_strategy\" = :p2 order by rowid limit 101", "params": {"p0": "PCR", "p1": "TRANSCRIPTOMIC", "p2": "RNA-Seq"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 1008, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC", "selected": true}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 1008, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_strategy=RNA-Seq", "selected": true}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "PCR", "label": "PCR", "count": 1008, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "PAIRED", "label": "PAIRED", "count": 792, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&experiment.library_layout=PAIRED", "selected": false}, {"value": "SINGLE", "label": "SINGLE", "count": 216, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 774, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&experiment.platform=ILLUMINA", "selected": false}, {"value": "ION_TORRENT", "label": "ION_TORRENT", "count": 178, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&experiment.platform=ION_TORRENT", "selected": false}, {"value": "BGISEQ", "label": "BGISEQ", "count": 50, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&experiment.platform=BGISEQ", "selected": false}, {"value": "DNBSEQ", "label": "DNBSEQ", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&experiment.platform=DNBSEQ", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "Adult", "label": "Adult", "count": 382, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation_coarse=Adult", "selected": false}, {"value": "Larval", "label": "Larval", "count": 301, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation_coarse=Larval", "selected": false}, {"value": "Embryo", "label": "Embryo", "count": 222, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation_coarse=Embryo", "selected": false}, {"value": "Undetermined", "label": "Undetermined", "count": 73, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation_coarse=Undetermined", "selected": false}, {"value": "Juvenile", "label": "Juvenile", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation_coarse=Juvenile", "selected": false}, {"value": "Multi-stage", "label": "Multi-stage", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation_coarse=Multi-stage", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "Adult", "label": "Adult", "count": 370, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Adult", "selected": false}, {"value": "Larval", "label": "Larval", "count": 301, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Larval", "selected": false}, {"value": "Pharyngula", "label": "Pharyngula", "count": 180, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Pharyngula", "selected": false}, {"value": "Undetermined", "label": "Undetermined", "count": 91, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Undetermined", "selected": false}, {"value": "Blastula", "label": "Blastula", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Blastula", "selected": false}, {"value": "Juvenile", "label": "Juvenile", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Juvenile", "selected": false}, {"value": "Hatching", "label": "Hatching", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Hatching", "selected": false}, {"value": "Multi-stage", "label": "Multi-stage", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Multi-stage", "selected": false}, {"value": "Gastrula", "label": "Gastrula", "count": 3, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&devstage_curation=Gastrula", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "All anatomical structures", "label": "All anatomical structures", "count": 344, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=All+anatomical+structures", "selected": false}, {"value": "Surface Structure", "label": "Surface Structure", "count": 250, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Surface+Structure", "selected": false}, {"value": "Nervous System", "label": "Nervous System", "count": 118, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Nervous+System", "selected": false}, {"value": "Liver and Biliary System", "label": "Liver and Biliary System", "count": 66, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Liver+and+Biliary+System", "selected": false}, {"value": "Cardiovascular System", "label": "Cardiovascular System", "count": 42, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Cardiovascular+System", "selected": false}, {"value": "Cell Line", "label": "Cell Line", "count": 35, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Cell+Line", "selected": false}, {"value": "Reproductive System", "label": "Reproductive System", "count": 34, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Reproductive+System", "selected": false}, {"value": "Sensory System", "label": "Sensory System", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Sensory+System", "selected": false}, {"value": "Muscular System", "label": "Muscular System", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Muscular+System", "selected": false}, {"value": "Respiratory System", "label": "Respiratory System", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation_coarse=Respiratory+System", "selected": false}], "truncated": true}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "Embryo Imprecise", "label": "Embryo Imprecise", "count": 194, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Embryo+Imprecise", "selected": false}, {"value": "Trunk", "label": "Trunk", "count": 178, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Trunk", "selected": false}, {"value": "Whole Organism", "label": "Whole Organism", "count": 150, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Whole+Organism", "selected": false}, {"value": "Brain", "label": "Brain", "count": 118, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Brain", "selected": false}, {"value": "Fin", "label": "Fin", "count": 72, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Fin", "selected": false}, {"value": "Liver", "label": "Liver", "count": 66, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Liver", "selected": false}, {"value": "Heart", "label": "Heart", "count": 42, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Heart", "selected": false}, {"value": "Cell Line", "label": "Cell Line", "count": 35, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Cell+Line", "selected": false}, {"value": "Gonad", "label": "Gonad", "count": 34, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Gonad", "selected": false}, {"value": "Eye", "label": "Eye", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&tissue_curation=Eye", "selected": false}], "truncated": true}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq", "results": [{"value": "unknown", "label": "unknown", "count": 971, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&technology=unknown", "selected": false}, {"value": "bulk", "label": "bulk", "count": 37, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&technology=bulk", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": "32482", "next_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=PCR&experiment.library_source=TRANSCRIPTOMIC&experiment.library_strategy=RNA-Seq&_next=32482", "private": false, "allow_execute_sql": true, "query_ms": 157.50098999706097}