{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"Oligo-dT\" and tissue_curation = \"Skin\"", "rows": [[3759, "ERR1294279", "ERX1365625", "ERS1067820", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "Mau tVBU1/tVBU1 skin transcriptome", "SAMEA3880686", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880686|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VBU1|allele:mau tVBU1/tVBU1|common name:zebrafish|dev stage:adult|sample name:VBU1|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 9", "vbu13", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "vbu13_GCCAAT_L008_R1_001.fastq.gz", "fastq", 2376143675.0, 23526175.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 9", "0:101", "A:655940769;C:534990399;G:527934646;T:655773043;N:1504818", 101, null, null, null, 655940769, 534990399, 527934646, 655773043, 1504818, "ERX1365625", "ERS1067820", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.95443, null, 0.10666, null, 0.73176, null, 0.50978, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3760, "ERR1294278", "ERX1365624", "ERS1067820", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "Mau tVBU1/tVBU1 skin transcriptome", "SAMEA3880686", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880686|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VBU1|allele:mau tVBU1/tVBU1|common name:zebrafish|dev stage:adult|sample name:VBU1|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 8", "vbu12", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "vbu12_GTGAAA_L008_R1_001.fastq.gz", "fastq", 1449181835.0, 14348335.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 8", "0:101", "A:399518584;C:327615685;G:323868050;T:397240465;N:939051", 101, null, null, null, 399518584, 327615685, 323868050, 397240465, 939051, "ERX1365624", "ERS1067820", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.95893, null, 0.09315, null, 0.73464, null, 0.48744, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3761, "ERR1294277", "ERX1365623", "ERS1067820", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "Mau tVBU1/tVBU1 skin transcriptome", "SAMEA3880686", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880686|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VBU1|allele:mau tVBU1/tVBU1|common name:zebrafish|dev stage:adult|sample name:VBU1|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 7", "vbu11", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "vbu11_GTCCGC_L008_R1_001.fastq.gz", "fastq", 1455235169.0, 14408269.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 7", "0:101", "A:392100064;C:337980617;G:331091626;T:393178582;N:884280", 101, null, null, null, 392100064, 337980617, 331091626, 393178582, 884280, "ERX1365623", "ERS1067820", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.95485, null, 0.08016, null, 0.72845, null, 0.47549, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3762, "ERR1294276", "ERX1365622", "ERS1067819", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "Mau tVE1/tVE1 skin transcriptome", "SAMEA3880685", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880685|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VE1|allele:mau tVE1/tVE1|common name:zebrafish|dev stage:adult|sample name:VE1|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 6", "ve13", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "ve13_CCGTCC_L008_R1_001.fastq.gz", "fastq", 1029294030.0, 10191030.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 6", "0:101", "A:284612731;C:231451012;G:228443320;T:284135536;N:651431", 101, null, null, null, 284612731, 231451012, 228443320, 284135536, 651431, "ERX1365622", "ERS1067819", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.93287, null, 0.10726, null, 0.72585, null, 0.4913, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3763, "ERR1294275", "ERX1365621", "ERS1067819", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "Mau tVE1/tVE1 skin transcriptome", "SAMEA3880685", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880685|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VE1|allele:mau tVE1/tVE1|common name:zebrafish|dev stage:adult|sample name:VE1|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 5", "ve12", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "ve12_ATGTCA_L008_R1_001.fastq.gz", "fastq", 1446322222.0, 14320022.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 5", "0:101", "A:400821160;C:324210104;G:320286425;T:400078485;N:926048", 101, null, null, null, 400821160, 324210104, 320286425, 400078485, 926048, "ERX1365621", "ERS1067819", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.92778, null, 0.09489, null, 0.73093, null, 0.48493, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3764, "ERR1294274", "ERX1365620", "ERS1067819", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "Mau tVE1/tVE1 skin transcriptome", "SAMEA3880685", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880685|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VE1|allele:mau tVE1/tVE1|common name:zebrafish|dev stage:adult|sample name:VE1|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 4", "ve11", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "ve11_AGTTCC_L008_R1_001.fastq.gz", "fastq", 2117238861.0, 20962761.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 4", "0:101", "A:591654664;C:469803769;G:462550117;T:591863795;N:1366516", 101, null, null, null, 591654664, 469803769, 462550117, 591863795, 1366516, "ERX1365620", "ERS1067819", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.93146, null, 0.09666, null, 0.73501, null, 0.48749, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3765, "ERR1294273", "ERX1365619", "ERS1067818", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "WT skin transcriptome", "SAMEA3880684", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880684|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:WT|allele:mau +/+|common name:zebrafish|dev stage:adult|sample name:WT|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 3", "wt3", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "wt3_AGTCAA_L008_R1_001.fastq.gz", "fastq", 2631687411.0, 26056311.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 3", "0:101", "A:734843629;C:584316000;G:577487406;T:733356850;N:1683526", 101, null, null, null, 734843629, 584316000, 577487406, 733356850, 1683526, "ERX1365619", "ERS1067818", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.95114, null, 0.1036, null, 0.72474, null, 0.48261, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3766, "ERR1294272", "ERX1365618", "ERS1067818", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "WT skin transcriptome", "SAMEA3880684", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880684|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:WT|allele:mau +/+|common name:zebrafish|dev stage:adult|sample name:WT|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 2", "wt2", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "wt2_CTTGTA_L008_R1_001.fastq.gz", "fastq", 2093443463.0, 20727163.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:669 2", "0:101", "A:607582034;C:442802229;G:437957089;T:603752294;N:1349817", 101, null, null, null, 607582034, 442802229, 437957089, 603752294, 1349817, "ERX1365618", "ERS1067818", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.94792, null, 0.10892, null, 0.73277, null, 0.51067, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [3767, "ERR1294271", "ERX1365617", "ERS1067818", "ERP014370", "PRJEB12848", "Danio rerio Mau mutants skin Transcriptome", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265", "Other", "Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects  we analyze skin transcriptome of adult wild type TU fish and two mau alleles.", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25", null, null, "WT skin transcriptome", "SAMEA3880684", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880684|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:WT|allele:mau +/+|common name:zebrafish|dev stage:adult|sample name:WT|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:668 1", "wt1", "1", "Illumina TruSeq RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP014370", "Illumina HiSeq 2000 sequencing", "ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16", "wt1_CAGATC_L008_R1_001.fastq.gz", "fastq", 1701561241.0, 16847141.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:668 1", "0:101", "A:505358711;C:348893979;G:343445186;T:502880170;N:983195", 101, null, null, null, 505358711, 348893979, 343445186, 502880170, 983195, "ERX1365617", "ERS1067818", "ERA567249", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 1, 0.94565, null, 0.13032, null, 0.73669, null, 0.50473, null, 101, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2016-02-25", "Adult", "Adult", "Skin", "Surface Structure"], [9770, "ERR5838122", "ERX5487778", "ERS6337138", "ERP119543", "PRJEB36360", "Transcriptomic analysis of adult skin from 9 Danio species", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27", "Other", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21", "PUBMED:33277491", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "Transcriptomic analysis of adult skin from 9 Danio species", "SAMEA8652584", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652584|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:05 Danio rerio adult skin 5|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:05 Danio rerio adult skin 5|sex:male|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 5", "unspecified", "1", "TruSeq stranded mRNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP119543", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29", "S1385Nr5.1.fastq.gz S1385Nr5.2.fastq.gz", "fastq fastq", 6912206316.0, 34306523.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 5", "0:100.74 1:100.74", "A:1853779551;C:1607929988;G:1658402611;T:1792045990;N:48176", 100, 100, null, null, 1853779551, 1607929988, 1658402611, 1792045990, 48176, "ERX5487778", "ERS6337138", "ERA4129786", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 2, 0.96095, 0.962, 0.08049, 0.07821, 0.70654, 0.70926, 0.51398, 0.51064, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2020-03-21", "Adult", "Adult", "Skin", "Surface Structure"], [9771, "ERR5838121", "ERX5487777", "ERS6337136", "ERP119543", "PRJEB36360", "Transcriptomic analysis of adult skin from 9 Danio species", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27", "Other", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21", "PUBMED:33277491", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "Transcriptomic analysis of adult skin from 9 Danio species", "SAMEA8652582", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652582|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:04 Danio rerio adult skin 4|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:04 Danio rerio adult skin 4|sex:male|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 4", "unspecified", "1", "TruSeq stranded mRNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP119543", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29", "S1385Nr4.1.fastq.gz S1385Nr4.2.fastq.gz", "fastq fastq", 6161942050.0, 30595009.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 4", "0:100.70 1:100.70", "A:1642716052;C:1446485458;G:1490121106;T:1582576605;N:42829", 100, 100, null, null, 1642716052, 1446485458, 1490121106, 1582576605, 42829, "ERX5487777", "ERS6337136", "ERA4129786", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 2, 0.96544, 0.96564, 0.07368, 0.07303, 0.70822, 0.71092, 0.50154, 0.50781, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2020-03-21", "Adult", "Adult", "Skin", "Surface Structure"], [9772, "ERR5838120", "ERX5487776", "ERS6337133", "ERP119543", "PRJEB36360", "Transcriptomic analysis of adult skin from 9 Danio species", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27", "Other", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21", "PUBMED:33277491", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "Transcriptomic analysis of adult skin from 9 Danio species", "SAMEA8652579", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652579|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:03 Danio rerio adult skin 3|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:03 Danio rerio adult skin 3|sex:female|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 3", "unspecified", "1", "TruSeq stranded mRNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP119543", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29", "S1385Nr3.1.fastq.gz S1385Nr3.2.fastq.gz", "fastq fastq", 7422881394.0, 36866805.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 3", "0:100.67 1:100.67", "A:1950275527;C:1768648993;G:1827362519;T:1876542858;N:51497", 100, 100, null, null, 1950275527, 1768648993, 1827362519, 1876542858, 51497, "ERX5487776", "ERS6337133", "ERA4129786", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 2, 0.97031, 0.97047, 0.04915, 0.04817, 0.71459, 0.71894, 0.51089, 0.5097, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2020-03-21", "Adult", "Adult", "Skin", "Surface Structure"], [9773, "ERR5838119", "ERX5487775", "ERS6337132", "ERP119543", "PRJEB36360", "Transcriptomic analysis of adult skin from 9 Danio species", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27", "Other", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21", "PUBMED:33277491", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "Transcriptomic analysis of adult skin from 9 Danio species", "SAMEA8652578", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652578|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:02 Danio rerio adult skin 2|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:02 Danio rerio adult skin 2|sex:female|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 2", "unspecified", "1", "TruSeq stranded mRNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP119543", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29", "S1385Nr2.1.fastq.gz S1385Nr2.2.fastq.gz", "fastq fastq", 7006718028.0, 34786110.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 2", "0:100.71 1:100.71", "A:1847371523;C:1665346769;G:1712373266;T:1781565768;N:60702", 100, 100, null, null, 1847371523, 1665346769, 1712373266, 1781565768, 60702, "ERX5487775", "ERS6337132", "ERA4129786", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 2, 0.96136, 0.96039, 0.05872, 0.05752, 0.70325, 0.70674, 0.46717, 0.48218, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2020-03-21", "Adult", "Adult", "Skin", "Surface Structure"], [9774, "ERR5838118", "ERX5487774", "ERS6337063", "ERP119543", "PRJEB36360", "Transcriptomic analysis of adult skin from 9 Danio species", "ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27", "Other", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21", "PUBMED:33277491", "Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio  Danio aesculapii  Danio nigrofasciatus  Danio tinwini  Danio kyathit  Danio albolineatus  Danio choprae  Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end  stranded RNA Seq was then carried out.", "Transcriptomic analysis of adult skin from 9 Danio species", "SAMEA8652509", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", "ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652509|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:01 Danio rerio adult skin 1|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:01 Danio rerio adult skin 1|sex:male|tissue type:skin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 1", "unspecified", "1", "TruSeq stranded mRNA Illumina", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP119543", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29", "S1385Nr1.1.fastq.gz S1385Nr1.2.fastq.gz", "fastq fastq", 6586457266.0, 32719900.0, "ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 1", "0:100.65 1:100.65", "A:1709547533;C:1593125315;G:1617088678;T:1666650824;N:44916", 100, 100, null, null, 1709547533, 1593125315, 1617088678, 1666650824, 44916, "ERX5487774", "ERS6337063", "ERA4129786", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive", "MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY", 2, 0.9531, 0.95366, 0.07763, 0.07567, 0.71384, 0.71634, 0.52409, 0.52475, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2020-03-21", "Adult", "Adult", "Skin", "Surface Structure"], [67576, "SRR17224787", "SRX13404154", "SRS11307153", "SRP350669", "PRJNA788440", "Danio rerio Raw sequence reads", "PRJNA788440", "Whole Genome Sequencing", "Danio rerio Raw sequence reads of eyes and skin", null, null, null, null, "zebrafishskin", null, "breed:AB|age:30days|sex:pooled male and female|tissue:skin|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNAseq of zebrafish", "skin mut 3 30dpf", "skin mut 3 30dpf", "RNAseq of skin", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP350669", null, null, "skin-mut_3_30dpf.R1.fq.gz skin-mut_3_30dpf.R2.fq.gz", "fastq fastq", 8025414600.0, 26751382.0, "skin mut 3 30dpf.R1.fq.gz", "0:150 1:150", "A:1973620738;C:1947874868;G:2125741877;T:1978157854;N:19263", 150, 150, null, null, 1973620738, 1947874868, 2125741877, 1978157854, 19263, "SRX13404154", "SRS11307153", "SRA1343194", "Huazhong Agricultural University|College of Fisheries", "Huazhong Agricultural University", 2, 0.92241, 0.9178, 0.03287, 0.03164, 0.74951, 0.75258, 0.53912, 0.5384, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-12-14", "Juvenile", "Juvenile", "Skin", "Surface Structure"], [67577, "SRR17224788", "SRX13404153", "SRS11307153", "SRP350669", "PRJNA788440", "Danio rerio Raw sequence reads", "PRJNA788440", "Whole Genome Sequencing", "Danio rerio Raw sequence reads of eyes and skin", null, null, null, null, "zebrafishskin", null, "breed:AB|age:30days|sex:pooled male and female|tissue:skin|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNAseq of zebrafish", "skin mut 2 30dpf", "skin mut 2 30dpf", "RNAseq of skin", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP350669", null, null, "skin-mut_2_30dpf.R1.fq.gz skin-mut_2_30dpf.R2.fq.gz", "fastq fastq", 6098938800.0, 20329796.0, "skin mut 2 30dpf.R1.fq.gz", "0:150 1:150", "A:1520021563;C:1474526796;G:1582813467;T:1521562690;N:14284", 150, 150, null, null, 1520021563, 1474526796, 1582813467, 1521562690, 14284, "SRX13404153", "SRS11307153", "SRA1343194", "Huazhong Agricultural University|College of Fisheries", "Huazhong Agricultural University", 2, 0.92872, 0.92431, 0.0312, 0.02974, 0.75426, 0.7567, 0.50003, 0.50362, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-12-14", "Juvenile", "Juvenile", "Skin", "Surface Structure"], [67578, "SRR17224789", "SRX13404152", "SRS11307153", "SRP350669", "PRJNA788440", "Danio rerio Raw sequence reads", "PRJNA788440", "Whole Genome Sequencing", "Danio rerio Raw sequence reads of eyes and skin", null, null, null, null, "zebrafishskin", null, "breed:AB|age:30days|sex:pooled male and 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We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, "replicate", "SEC 21dpf r", "SEC 21dpf r", null, "strain:EK|age:21dpf|dev stage:21dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 21dpf replicate", "LTS21 YW06", "LTS21 YW06", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YW06_S8_L001_R1_001.fastq.gz LTS21_YW06_S8_L001_R2_001.fastq.gz", "fastq fastq", 18884108924.0, 62530162.0, "LTS21 YW06 S8 L001 R1 001.fastq.gz", "0:151 1:151", "A:4928408237;C:4582387963;G:4378535805;T:4978379185;N:16397734", 151, 151, null, null, 4928408237, 4582387963, 4378535805, 4978379185, 16397734, "SRX18074634", "SRS15579669", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.78046, 0.77311, 0.03967, 0.03852, 0.76834, 0.76962, 0.48776, 0.49055, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Larval", "Larval", "Skin", "Surface Structure"], [71772, "SRR22094620", "SRX18074633", "SRS15579668", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, null, "SEC 21dpf", "Zebrafish SEC 21dpf", null, "strain:EK|age:21dpf|dev stage:21dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 21dpf", "LTS21 YW05", "LTS21 YW05", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YW05_S7_L001_R1_001.fastq.gz LTS21_YW05_S7_L001_R2_001.fastq.gz", "fastq fastq", 19711202968.0, 65268884.0, "LTS21 YW05 S7 L001 R1 001.fastq.gz", "0:151 1:151", "A:5117592567;C:4797244360;G:4551347423;T:5228007671;N:17010947", 151, 151, null, null, 5117592567, 4797244360, 4551347423, 5228007671, 17010947, "SRX18074633", "SRS15579668", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.76712, 0.76186, 0.039, 0.03769, 0.76637, 0.76692, 0.45633, 0.4647, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Larval", "Larval", "Skin", "Surface Structure"], [71773, "SRR22094616", "SRX18074632", "SRS15579667", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, "replicate", "SEC 14dpf r", "SEC 14dpf r", null, "strain:EK|age:14dpf|dev stage:14dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 14dpf replicate", "LTS21 YW04", "LTS21 YW04", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YW04_S6_L001_R1_001.fastq.gz LTS21_YW04_S6_L001_R2_001.fastq.gz", "fastq fastq", 18505626216.0, 61276908.0, "LTS21 YW04 S6 L001 R1 001.fastq.gz", "0:151 1:151", "A:4873584588;C:4461374730;G:4234634486;T:4920008051;N:16024361", 151, 151, null, null, 4873584588, 4461374730, 4234634486, 4920008051, 16024361, "SRX18074632", "SRS15579667", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.76819, 0.76283, 0.05352, 0.05251, 0.76765, 0.76838, 0.50479, 0.49192, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Larval", "Larval", "Skin", "Surface Structure"], [71774, "SRR22094619", "SRX18074631", "SRS15579666", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, null, "SEC 14dpf", "Zebrafish SEC 14dpf", null, "strain:EK|age:14dpf|dev stage:14dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 14dpf", "LTS21 YW03", "LTS21 YW03", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YW03_S5_L001_R1_001.fastq.gz LTS21_YW03_S5_L001_R2_001.fastq.gz", "fastq fastq", 20010150956.0, 66258778.0, "LTS21 YW03 S5 L001 R1 001.fastq.gz", "0:151 1:151", "A:5185539519;C:4876294580;G:4677668447;T:5253656025;N:16992385", 151, 151, null, null, 5185539519, 4876294580, 4677668447, 5253656025, 16992385, "SRX18074631", "SRS15579666", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.78205, 0.77596, 0.04076, 0.03939, 0.78248, 0.78293, 0.4586, 0.46807, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Larval", "Larval", "Skin", "Surface Structure"], [71775, "SRR22094617", "SRX18074630", "SRS15579665", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, "replicate", "SEC 6dpf r", "SEC 6dpf r", null, "strain:EK|age:6dpf|dev stage:6dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 6dpf replicate", "LTS21 YW02", "LTS21 YW02", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YW02_S4_L001_R1_001.fastq.gz LTS21_YW02_S4_L001_R2_001.fastq.gz", "fastq fastq", 20220291918.0, 66954609.0, "LTS21 YW02 S4 L001 R1 001.fastq.gz", "0:151 1:151", "A:5407749316;C:4807063001;G:4510753168;T:5477213837;N:17512596", 151, 151, null, null, 5407749316, 4807063001, 4510753168, 5477213837, 17512596, "SRX18074630", "SRS15579665", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.74742, 0.74156, 0.05378, 0.05283, 0.75118, 0.75183, 0.49329, 0.49679, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Larval", "Larval", "Skin", "Surface Structure"], [71776, "SRR22094618", "SRX18074629", "SRS15579664", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, null, "SEC 6dpf", "Zebrafish SEC 6dpf", null, "strain:EK|age:6dpf|dev stage:6dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 6dpf", "LTS21 YG02", "LTS21 YG02", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YG02_S2_L001_R1_001.fastq.gz LTS21_YG02_S2_L001_R2_001.fastq.gz", "fastq fastq", 20584419962.0, 68160331.0, "LTS21 YG02 S2 L001 R1 001.fastq.gz", "0:151 1:151", "A:5411222042;C:4935924238;G:4703040707;T:5516534305;N:17698670", 151, 151, null, null, 5411222042, 4935924238, 4703040707, 5516534305, 17698670, "SRX18074629", "SRS15579664", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.76895, 0.7633, 0.03985, 0.03893, 0.76481, 0.76607, 0.46945, 0.46388, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Larval", "Larval", "Skin", "Surface Structure"], [71777, "SRR22094621", "SRX18074628", "SRS15579663", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, "replicate", "SEC 2dpf r", "SEC 2dpf r", null, "strain:EK|age:2dpf|dev stage:2dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 2dpf replicate", "LTS21 YW01", "LTS21 YW01", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YW01_S3_L001_R1_001.fastq.gz LTS21_YW01_S3_L001_R2_001.fastq.gz", "fastq fastq", 19999530824.0, 66223612.0, "LTS21 YW01 S3 L001 R1 001.fastq.gz", "0:151 1:151", "A:5239226851;C:4832853944;G:4579224440;T:5331222900;N:17002689", 151, 151, null, null, 5239226851, 4832853944, 4579224440, 5331222900, 17002689, "SRX18074628", "SRS15579663", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.77399, 0.76874, 0.04763, 0.04655, 0.75035, 0.75087, 0.423, 0.42383, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Hatching", "Embryo", "Skin", "Surface Structure"], [71778, "SRR22094622", "SRX18074627", "SRS15579662", "SRP405171", "PRJNA893397", "RNA sequencing of the zebrafish superficial epithelial cells", "PRJNA893397", "Other", "We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it \"asynthetic fission\". We determined that asynthetic fission occurs in the absence of DNA replication  generating progeny cells with reduced genome size. Here  we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.", null, null, null, "SEC 2dpf", "Zebrafish SEC 2dpf", null, "strain:EK|age:2dpf|dev stage:2dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA sequencing of zebrafish:superficial epithelial cells 2dpf", "LTS21 YG01", "LTS21 YG01", "100  150 larvae at 2 dpf  6 dpf  14 dpf  and 21 dpf were first rinsed with 1x DPBS Gibco  14190 144  then digested with collagenase Sigma  C9891 and 0.25% trypsin EDTA Sigma  T4049. Digestion was stopped with DMEM Gibco  11995 065 with 10% NCS and rinsed with 1 x DPBS. Then  cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI  cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1%  mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in  80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center  Academia Sinica  Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation  Poly A.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "NextSeq 2000", null, "SRP405171", null, null, "LTS21_YG01_S1_L001_R1_001.fastq.gz LTS21_YG01_S1_L001_R2_001.fastq.gz", "fastq fastq", 18171646530.0, 60171015.0, "LTS21 YG01 S1 L001 R1 001.fastq.gz", "0:151 1:151", "A:4727063040;C:4426085600;G:4200458773;T:4802148545;N:15890572", 151, 151, null, null, 4727063040, 4426085600, 4200458773, 4802148545, 15890572, "SRX18074627", "SRS15579662", "SRA1530145", "Academia Sinica|Institute of Cellular and Organismic Biology", "Academia Sinica", 2, 0.76303, 0.75602, 0.03268, 0.03163, 0.78427, 0.78484, 0.3601, 0.35972, 151, 151, "B", "B", "biological fallback assumption", "illumina", "nextseq_v2", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Taiwan", "2022-10-29", "Hatching", "Embryo", "Skin", "Surface Structure"]], "truncated": false, "filtered_table_rows_count": 39, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", 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[experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], 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