{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"Oligo-dT\", technology = \"unknown\" and tissue_curation = \"Multi-tissue\"", "rows": [[9831, "ERR4029236", "ERX4030552", "ERS4513990", "ERP121186", "PRJEB37848", "RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss", "E-MTAB-8959", "Transcriptome Analysis", "The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.", "ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16", null, "Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. 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Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.", "ZF H 1", "SAMEA6786307", "CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences", "ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786307|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF H 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:heart|sample name:E MTAB 8959:ZF H 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss", "E MTAB 8959:ZF H 1 p", "ZF H 1 p", "RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss", "Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. 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Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.", "ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16", null, "Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.", "ZF B 1", "SAMEA6786303", "CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences", "ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786303|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF B 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:brain|sample name:E MTAB 8959:ZF B 1|scientific name:Danio rerio|sex:male", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss", "E MTAB 8959:ZF B 1 p", "ZF B 1 p", "RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss", "Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.", "Experimental Factor: organism part:brain|Experimental Factor: organism:Danio rerio", "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP121186", "Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss", "ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16", "ZF-B-1_TCCGGAGA-CCTATCCT_R1_001.fastq.gz ZF-B-1_TCCGGAGA-CCTATCCT_R2_001.fastq.gz", "fastq fastq", 4581319932.0, 18179841.0, "E MTAB 8959:ZF B 1 TCCGGAGA CCTATCCT R", "0:126 1:126", "A:1290565823;C:1002821741;G:990971158;T:1296339062;N:622148", 126, 126, null, null, 1290565823, 1002821741, 990971158, 1296339062, 622148, "ERX4030545", "ERS4513983", "ERA2508028", "CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive", "CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive", 2, 0.94092, 0.94175, 0.16309, 0.16239, 0.69351, 0.69597, 0.50407, 0.5013, 126, 126, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Norway", "2020-04-16", "Adult", "Adult", "Multi-tissue", "Multi-system"], [11138, "ERR10034112", "ERX9574516", "ERS12562227", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Adult posterior tissue including caudal fin from Danio rerio", "Drerio adult 5", "SAMEA110464199", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464199|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE65|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE65|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:846 19258", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr65.1.fastq.gz S879Nr65.2.fastq.gz", "fastq fastq", 8113474926.0, 40450096.0, "ena RUN TAB 05 08 2022 14:25:08:846 19259", "0:100.29 1:100.29", "A:2219631013;C:1865987982;G:1932841486;T:2094905151;N:109294", 100, 100, null, null, 2219631013, 1865987982, 1932841486, 2094905151, 109294, "ERX9574516", "ERS12562227", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.95479, 0.95537, 0.06841, 0.06855, 0.7195, 0.72573, 0.50694, 0.51704, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Adult", "Adult", "Multi-tissue", "Multi-system"], [11139, "ERR10034111", "ERX9574515", "ERS12562226", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Adult posterior tissue including caudal fin from Danio rerio", "Drerio adult 4", "SAMEA110464198", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464198|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE64|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE64|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:846 19256", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr64.1.fastq.gz S879Nr64.2.fastq.gz", "fastq fastq", 8802988668.0, 43612766.0, "ena RUN TAB 05 08 2022 14:25:08:846 19257", "0:100.92 1:100.92", "A:2340528166;C:2077565381;G:2149703382;T:2235069101;N:122638", 100, 100, null, null, 2340528166, 2077565381, 2149703382, 2235069101, 122638, "ERX9574515", "ERS12562226", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.96129, 0.96078, 0.05848, 0.0573, 0.72857, 0.73152, 0.51755, 0.51293, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Adult", "Adult", "Multi-tissue", "Multi-system"], [11140, "ERR10034110", "ERX9574514", "ERS12562225", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Adult posterior tissue including caudal fin from Danio rerio", "Drerio adult 3", "SAMEA110464197", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464197|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE63|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE63|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:846 19254", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr63.1.fastq.gz S879Nr63.2.fastq.gz", "fastq fastq", 14206556196.0, 70795830.0, "ena RUN TAB 05 08 2022 14:25:08:846 19255", "0:100.33 1:100.33", "A:3869532222;C:3268435275;G:3367493228;T:3700901664;N:193807", 100, 100, null, null, 3869532222, 3268435275, 3367493228, 3700901664, 193807, "ERX9574514", "ERS12562225", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.95612, 0.95545, 0.06896, 0.06868, 0.72271, 0.72717, 0.52736, 0.5241, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Adult", "Adult", "Multi-tissue", "Multi-system"], [11141, "ERR10034109", "ERX9574513", "ERS12562224", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Adult posterior tissue including caudal fin from Danio rerio", "Drerio adult 2", "SAMEA110464196", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464196|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE62|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE62|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:845 19252", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr62.1.fastq.gz S879Nr62.2.fastq.gz", "fastq fastq", 12651629118.0, 63063012.0, "ena RUN TAB 05 08 2022 14:25:08:846 19253", "0:100.31 1:100.31", "A:3421673162;C:2936138781;G:3010862024;T:3282785988;N:169163", 100, 100, null, null, 3421673162, 2936138781, 3010862024, 3282785988, 169163, "ERX9574513", "ERS12562224", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.9607, 0.96017, 0.06766, 0.06784, 0.72803, 0.73109, 0.52129, 0.51739, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Adult", "Adult", "Multi-tissue", "Multi-system"], [11142, "ERR10034108", "ERX9574512", "ERS12562223", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Adult posterior tissue including caudal fin from Danio rerio", "Drerio adult 1", "SAMEA110464195", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464195|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE61|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE61|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:845 19250", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr61.1.fastq.gz S879Nr61.2.fastq.gz", "fastq fastq", 11356103418.0, 56579995.0, "ena RUN TAB 05 08 2022 14:25:08:845 19251", "0:100.35 1:100.35", "A:3086637336;C:2630031473;G:2714955094;T:2924323148;N:156367", 100, 100, null, null, 3086637336, 2630031473, 2714955094, 2924323148, 156367, "ERX9574512", "ERS12562223", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.95866, 0.95853, 0.06094, 0.0606, 0.72845, 0.73164, 0.52266, 0.5244, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Adult", "Adult", "Multi-tissue", "Multi-system"], [11143, "ERR10034092", "ERX9574496", "ERS12562207", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Postmetamorphic posterior tissue including caudal fin from Danio rerio", "Drerio postmetamorphic 5", "SAMEA110464179", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464179|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE45|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE45|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:841 19218", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr45.1.fastq.gz S879Nr45.2.fastq.gz", "fastq fastq", 31205725028.0, 155856846.0, "ena RUN TAB 05 08 2022 14:25:08:841 19219", "0:100.11 1:100.11", "A:8165930827;C:7529482042;G:7775787815;T:7734109822;N:414522", 100, 100, null, null, 8165930827, 7529482042, 7775787815, 7734109822, 414522, "ERX9574496", "ERS12562207", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.97305, 0.97331, 0.04336, 0.04353, 0.73728, 0.74324, 0.47532, 0.4806, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Undetermined", "Undetermined", "Multi-tissue", "Multi-system"], [11144, "ERR10034091", "ERX9574495", "ERS12562206", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Postmetamorphic posterior tissue including caudal fin from Danio rerio", "Drerio postmetamorphic 4", "SAMEA110464178", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464178|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE44|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE44|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:841 19216", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr44.1.fastq.gz S879Nr44.2.fastq.gz", "fastq fastq", 12791868714.0, 63868301.0, "ena RUN TAB 05 08 2022 14:25:08:841 19217", "0:100.14 1:100.14", "A:3327645062;C:3095411506;G:3211023712;T:3157616450;N:171984", 100, 100, null, null, 3327645062, 3095411506, 3211023712, 3157616450, 171984, "ERX9574495", "ERS12562206", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.97212, 0.97067, 0.04428, 0.04445, 0.74548, 0.75114, 0.47785, 0.49354, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Undetermined", "Undetermined", "Multi-tissue", "Multi-system"], [11145, "ERR10034090", "ERX9574494", "ERS12562205", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Postmetamorphic posterior tissue including caudal fin from Danio rerio", "Drerio postmetamorphic 3", "SAMEA110464177", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464177|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE43|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE43|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:840 19214", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr43.1.fastq.gz S879Nr43.2.fastq.gz", "fastq fastq", 8220676412.0, 40976395.0, "ena RUN TAB 05 08 2022 14:25:08:840 19215", "0:100.31 1:100.31", "A:2152497687;C:1985765652;G:2020897890;T:2061403084;N:112099", 100, 100, null, null, 2152497687, 1985765652, 2020897890, 2061403084, 112099, "ERX9574494", "ERS12562205", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.97126, 0.97279, 0.04717, 0.04683, 0.74223, 0.74479, 0.47471, 0.49071, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Undetermined", "Undetermined", "Multi-tissue", "Multi-system"], [11146, "ERR10034089", "ERX9574493", "ERS12562204", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Postmetamorphic posterior tissue including caudal fin from Danio rerio", "Drerio postmetamorphic 2", "SAMEA110464176", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464176|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE42|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE42|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:840 19212", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr42.1.fastq.gz S879Nr42.2.fastq.gz", "fastq fastq", 9426020714.0, 47021406.0, "ena RUN TAB 05 08 2022 14:25:08:840 19213", "0:100.23 1:100.23", "A:2487913802;C:2263414842;G:2331327650;T:2343237033;N:127387", 100, 100, null, null, 2487913802, 2263414842, 2331327650, 2343237033, 127387, "ERX9574493", "ERS12562204", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.97197, 0.97222, 0.04546, 0.04553, 0.74235, 0.7485, 0.48841, 0.48446, 93, 93, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Undetermined", "Undetermined", "Multi-tissue", "Multi-system"], [11147, "ERR10034088", "ERX9574492", "ERS12562203", "ERP140005", "PRJEB55122", "Danio developmental transcriptomes", "ca4a518e-aaf7-42d9-9758-352aac808809", "Other", "Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.", "ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08", null, "Postmetamorphic posterior tissue including caudal fin from Danio rerio", "Drerio postmetamorphic 1", "SAMEA110464175", "max planck institute for biology", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464175|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE41|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE41|sex:not provided|tissue type:posterior trunk including caudal fin", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing", "ena EXPERIMENT TAB 05 08 2022 14:25:08:840 19210", "unspecified", "1", "Illumina TruSeq DNA Nano Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "ERP140005", "Illumina NovaSeq 6000 paired end sequencing", "ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08", "S879Nr41.1.fastq.gz S879Nr41.2.fastq.gz", "fastq fastq", 10220995994.0, 50953819.0, "ena RUN TAB 05 08 2022 14:25:08:840 19211", "0:100.30 1:100.30", "A:2679378092;C:2474435843;G:2537496182;T:2529546220;N:139657", 100, 100, null, null, 2679378092, 2474435843, 2537496182, 2529546220, 139657, "ERX9574492", "ERS12562203", "ERA16814395", "max planck institute for biology|European Nucleotide Archive", "max planck institute for biology", 2, 0.97322, 0.97339, 0.05421, 0.05374, 0.73693, 0.74194, 0.50642, 0.50631, 101, 101, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2022-08-05", "Undetermined", "Undetermined", "Multi-tissue", "Multi-system"], [28514, "SRR26502432", "SRX22206245", "SRS19261598", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.", "Zebrafish AB IP TNP KLH 28d", "IPTNP 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish2", "zebrafish AB Kidney IP TNPKLH IgZ2 Fish2", "zebrafish AB Kidney IP TNPKLH IgZ2 Fish2", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish2 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPTNP_28d_AB_Ki_Z2_Fish2_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish2_clean_R2.fastq.gz", "fastq fastq", 223722000.0, 372870.0, "IPTNP 28d AB Ki Z2 Fish2 clean R1.fastq.gz", "0:300 1:300", "A:60349354;C:49977478;G:49698065;T:63696951;N:152", 300, 300, null, null, 60349354, 49977478, 49698065, 63696951, 152, "SRX22206245", "SRS19261598", "SRA1738863", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00039, 0.56274, 0.0, 0.03514, 0.99977, 0.99977, 0.13793, 0.0001, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28515, "SRR26502433", "SRX22206244", "SRS19261598", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.", "Zebrafish AB IP TNP KLH 28d", "IPTNP 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish2", "zebrafish AB Kidney IP TNPKLH IgM Fish2", "zebrafish AB Kidney IP TNPKLH IgM Fish2", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish2 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPTNP_28d_AB_Ki_M_Fish2_clean_R2.fastq.gz IPTNP_28d_AB_Ki_M_Fish2_clean_R1.fastq.gz", "fastq fastq", 1296356400.0, 2160594.0, "IPTNP 28d AB Ki M Fish2 clean R1.fastq.gz", "0:300 1:300", "A:345599628;C:292675523;G:307032178;T:351048163;N:908", 300, 300, null, null, 345599628, 292675523, 307032178, 351048163, 908, "SRX22206244", "SRS19261598", "SRA1738863", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.13277, 0.493, 0.0, 0.0538, 0.99997, 0.99983, 0.0, 0.00016, 300, 300, "B", "B", "mate1-mate2 similar by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28516, "SRR26502438", "SRX22206239", "SRS19261598", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.", "Zebrafish AB IP TNP KLH 28d", "IPTNP 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish6", "zebrafish AB Kidney IP TNPKLH IgZ2 Fish6", "zebrafish AB Kidney IP TNPKLH IgZ2 Fish6", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish6 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPTNP_28d_AB_Ki_Z2_Fish6_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish6_clean_R2.fastq.gz", "fastq fastq", 36927000.0, 61545.0, "IPTNP 28d AB Ki Z2 Fish6 clean R1.fastq.gz", "0:300 1:300", "A:10692726;C:8421425;G:7948050;T:9864799;N:0", 300, 300, null, null, 10692726, 8421425, 7948050, 9864799, 0, "SRX22206239", "SRS19261598", "SRA1738863", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00217, 0.43144, 0.00031, 0.04455, 0.99902, 0.99926, 0.46153, 0.00207, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28517, "SRR26502439", "SRX22206238", "SRS19261598", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.", "Zebrafish AB IP TNP KLH 28d", "IPTNP 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish6", "zebrafish AB Kidney IP TNPKLH IgM Fish6", "zebrafish AB Kidney IP TNPKLH IgM Fish6", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish6 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPTNP_28d_AB_Ki_M_Fish6_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish6_clean_R2.fastq.gz", "fastq fastq", 579266400.0, 965444.0, "IPTNP 28d AB Ki M Fish6 clean R1.fastq.gz", "0:300 1:300", "A:155729386;C:133391465;G:134161096;T:155984401;N:52", 300, 300, null, null, 155729386, 133391465, 134161096, 155984401, 52, "SRX22206238", "SRS19261598", "SRA1738863", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.10691, 0.50696, 0.0, 0.06888, 0.99989, 0.99975, 0.00022, 0.00014, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28518, "SRR26502440", "SRX22206237", "SRS19261598", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.", "Zebrafish AB IP TNP KLH 28d", "IPTNP 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish5", "zebrafish AB Kidney IP TNPKLH IgZ2 Fish5", "zebrafish AB Kidney IP TNPKLH IgZ2 Fish5", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish5 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPTNP_28d_AB_Ki_Z2_Fish5_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish5_clean_R2.fastq.gz", "fastq fastq", 72321600.0, 120536.0, "IPTNP 28d AB Ki Z2 Fish5 clean R1.fastq.gz", "0:300 1:300", "A:20213882;C:16497376;G:15762001;T:19848333;N:8", 300, 300, null, null, 20213882, 16497376, 15762001, 19848333, 8, "SRX22206237", "SRS19261598", "SRA1738863", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00248, 0.52445, 0.00015, 0.04429, 0.99902, 0.99918, 0.13142, 0.00403, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28519, "SRR26502441", "SRX22206236", "SRS19261598", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.", "Zebrafish AB IP TNP KLH 28d", "IPTNP 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish5", "zebrafish AB Kidney IP TNPKLH IgM Fish5", "zebrafish AB Kidney IP TNPKLH IgM Fish5", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. 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Fish2 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgM library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPVa_28d_AB_Ki_M_Fish2_clean_R1.fastq.gz IPVa_28d_AB_Ki_M_Fish2_clean_R2.fastq.gz", "fastq fastq", 1400700000.0, 2334500.0, "IPVa 28d AB Ki M Fish2 clean R1.fastq.gz", "0:300 1:300", "A:382658780;C:319810107;G:330740047;T:367285987;N:205079", 300, 300, null, null, 382658780, 319810107, 330740047, 367285987, 205079, "SRX22205911", "SRS19261295", "SRA1738828", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.12814, 0.36107, 0.0, 0.0523, 0.99997, 0.99985, 0.0, 0.00014, 300, 300, "B", "B", "mate1-mate2 similar by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28528, "SRR26502115", "SRX22205902", "SRS19261295", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the Vibrio anguillarum via IP injection.", "Zebrafish AB IP Va 28d", "IPVa 28d AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP Vibrio anguillarum|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 at 28 days post the Vibrio anguillarum via IP injection: adult kidney fish1", "zebrafish AB Kidney IP Va IgZ2 Fish1", "zebrafish AB Kidney IP Va IgZ2 Fish1", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. 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Fish1 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgM library.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "IPVa_28d_AB_Ki_M_Fish1_clean_R1.fastq.gz IPVa_28d_AB_Ki_M_Fish1_clean_R2.fastq.gz", "fastq fastq", 1208007000.0, 2013345.0, "IPVa 28d AB Ki M Fish1 clean R1.fastq.gz", "0:300 1:300", "A:333262499;C:274287635;G:285027652;T:315252859;N:176355", 300, 300, null, null, 333262499, 274287635, 285027652, 315252859, 176355, "SRX22205901", "SRS19261295", "SRA1738828", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.11556, 0.31221, 0.0, 0.04066, 0.99993, 0.99985, 0.00017, 0.00028, 300, 300, "B", "B", "mate1-mate2 similar by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-25", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28530, "SRR26488229", "SRX22192101", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish4", "zebrafish AB Kidney Unimmunization IgZ2 Fish4", "zebrafish AB Kidney Unimmunization IgZ2 Fish4", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish4 IgZ2.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_Z2_Fish4_clean_R1.fastq.gz UI_AB_Ki_Z2_Fish4_clean_R2.fastq.gz", "fastq fastq", 452866800.0, 754778.0, "UI AB Ki Z2 Fish4 clean R1.fastq.gz", "0:300 1:300", "A:119823464;C:102645888;G:102371143;T:127641629;N:384676", 300, 300, null, null, 119823464, 102645888, 102371143, 127641629, 384676, "SRX22192101", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00081, 0.39173, 0.0, 0.16017, 0.99981, 0.99979, 0.04273, 0.00056, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28531, "SRR26488230", "SRX22192100", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM without xxx: adult kidney fish4", "zebrafish AB Kidney Unimmunization IgM Fish4", "zebrafish AB Kidney Unimmunization IgM Fish4", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish4 IgM.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_M_Fish4_clean_R2.fastq.gz UI_AB_Ki_M_Fish4_clean_R1.fastq.gz", "fastq fastq", 1175273400.0, 1958789.0, "UI AB Ki M Fish4 clean R1.fastq.gz", "0:300 1:300", "A:320768072;C:266946605;G:278763949;T:307641532;N:1153242", 300, 300, null, null, 320768072, 266946605, 278763949, 307641532, 1153242, "SRX22192100", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.36646, 0.48405, 0.0, 0.0978, 0.99993, 0.99981, 3e-05, 7e-05, 300, 300, "B", "B", "biological fallback assumption", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28532, "SRR26488233", "SRX22192097", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish2", "zebrafish AB Kidney Unimmunization IgZ2 Fish2", "zebrafish AB Kidney Unimmunization IgZ2 Fish2", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish2 IgZ2.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_Z2_Fish2_clean_R2.fastq.gz UI_AB_Ki_Z2_Fish2_clean_R1.fastq.gz", "fastq fastq", 180337528.0, 299564.0, "UI AB Ki Z2 Fish2 clean R1.fastq.gz", "0:301 1:301", "A:50544268;C:41015792;G:40132471;T:48636308;N:8689", 301, 301, null, null, 50544268, 41015792, 40132471, 48636308, 8689, "SRX22192097", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00202, 0.27435, 0.00016, 0.05953, 0.99736, 0.99866, 0.41224, 0.00434, 301, 301, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28533, "SRR26488236", "SRX22192094", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM without xxx: adult kidney fish2", "zebrafish AB Kidney Unimmunization IgM Fish2", "zebrafish AB Kidney Unimmunization IgM Fish2", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish2 IgM.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_M_Fish2_clean_R1.fastq.gz UI_AB_Ki_M_Fish2_clean_R2.fastq.gz", "fastq fastq", 235187554.0, 390677.0, "UI AB Ki M Fish2 clean R1.fastq.gz", "0:301 1:301", "A:63276642;C:54233985;G:55195713;T:62481210;N:4", 301, 301, null, null, 63276642, 54233985, 55195713, 62481210, 4, "SRX22192094", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.12903, 0.42746, 0.0, 0.0323, 0.99995, 0.99987, 0.0, 9e-05, 301, 301, "B", "B", "mate1-mate2 similar by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28534, "SRR26488237", "SRX22192093", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish10", "zebrafish AB Kidney Unimmunization IgZ2 Fish10", "zebrafish AB Kidney Unimmunization IgZ2 Fish10", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish10 IgZ2.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_Z2_Fish10_clean_R1.fastq.gz UI_AB_Ki_Z2_Fish10_clean_R2.fastq.gz", "fastq fastq", 187774200.0, 312957.0, "UI AB Ki Z2 Fish10 clean R1.fastq.gz", "0:300 1:300", "A:51941827;C:41824457;G:42259702;T:51589508;N:158706", 300, 300, null, null, 51941827, 41824457, 42259702, 51589508, 158706, "SRX22192093", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00197, 0.48348, 4e-05, 0.02602, 0.99981, 0.99985, 0.02049, 4e-05, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28535, "SRR26488238", "SRX22192092", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM without xxx: adult kidney fish10", "zebrafish AB Kidney Unimmunization IgM Fish10", "zebrafish AB Kidney Unimmunization IgM Fish10", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish10 IgM.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_M_Fish10_clean_R1.fastq.gz UI_AB_Ki_M_Fish10_clean_R2.fastq.gz", "fastq fastq", 1348929600.0, 2248216.0, "UI AB Ki M Fish10 clean R1.fastq.gz", "0:300 1:300", "A:372533980;C:296280069;G:315957178;T:362830159;N:1328214", 300, 300, null, null, 372533980, 296280069, 315957178, 362830159, 1328214, "SRX22192092", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.04106, 0.65457, 0.0, 0.01839, 0.99995, 0.99987, 0.00017, 2e-05, 300, 300, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28536, "SRR26488247", "SRX22192083", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish1", "zebrafish AB Kidney Unimmunization IgZ2 Fish1", "zebrafish AB Kidney Unimmunization IgZ2 Fish1", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish1 IgZ2.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_Z2_Fish1_clean_R1.fastq.gz UI_AB_Ki_Z2_Fish1_clean_R2.fastq.gz", "fastq fastq", 74076702.0, 123051.0, "UI AB Ki Z2 Fish1 clean R1.fastq.gz", "0:301 1:301", "A:21163846;C:16505697;G:16394698;T:20009432;N:3029", 301, 301, null, null, 21163846, 16505697, 16394698, 20009432, 3029, "SRX22192083", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.00345, 0.35918, 0.00037, 0.01229, 0.99797, 0.99888, 0.46913, 0.00408, 301, 301, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [28537, "SRR26488248", "SRX22192082", "SRS19248767", "SRP468057", "PRJNA1027976", "Danio rerio BCR rep seq Raw sequence reads", "PRJNA1027976", "Other", "A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.", null, null, "Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.", "Zebrafish AB Kidney Unimmunization", "UI AB", null, "strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Rep Seq of zebrafish AB IgM without xxx: adult kidney fish1", "zebrafish AB Kidney Unimmunization IgM Fish1", "zebrafish AB Kidney Unimmunization IgM Fish1", "A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish1 IgM.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "SRP468057", null, null, "UI_AB_Ki_M_Fish1_clean_R1.fastq.gz UI_AB_Ki_M_Fish1_clean_R2.fastq.gz", "fastq fastq", 237047132.0, 393766.0, "UI AB Ki M Fish1 clean R1.fastq.gz", "0:301 1:301", "A:64821499;C:55151969;G:56692025;T:60381634;N:5", 301, 301, null, null, 64821499, 55151969, 56692025, 60381634, 5, "SRX22192082", "SRS19248767", "SRA1738037", "Sun Yat-sen University|School of Life Sciences", "Sun Yat-sen University", 2, 0.11965, 0.51034, 0.0, 0.01727, 0.99995, 0.99987, 8e-05, 2e-05, 301, 301, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "full_length", "poly_a", "smarter", "bulk", "unknown", "unknown", null, "China", "2023-10-24", "Adult", "Adult", "Multi-tissue", "Multi-system"], [34478, "SRR31775061", "SRX27136707", "SRS23592227", "SRP552578", "PRJNA1200306", "Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration", "PRJNA1200306", "Other", "The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. 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However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. 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