{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"Oligo-dT\", experiment.library_source = \"TRANSCRIPTOMIC SINGLE CELL\" and tissue_curation_coarse = \"Liver and Biliary System\"", "rows": [[70706, "SRR21457012", "SRX17460721", "SRS15014532", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Liver in the WT S4 L004", null, "isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf wild type liver", "Live S4 L004  aliquot 4", "Live S4 L004  aliquot 4", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S4_Live_20200825NB_S4_L004_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L004_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L004_R2_001.fastq.gz", "fastq fastq fastq", 15359722785.0, 82137555.0, "20200806 S4 Live 20200825NB S4 L004 I1 001.fastq.gz", "0:8 1:28 2:151", "A:3860252969;C:2756020453;G:2781498176;T:3004915512;N:83695", 8, 28, 151, null, 3860252969, 2756020453, 2781498176, 3004915512, 83695, "SRX17460721", "SRS15014532", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.90519, null, 0.06757, null, 0.88243, null, 0.74961, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Liver", "Liver and Biliary System"], [70707, "SRR21457013", "SRX17460720", "SRS15014531", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Liver in the WT S4 L003", null, "isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf wild type liver", "Live S4 L003  aliquot 3", "Live S4 L003  aliquot 3", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S4_Live_20200825NB_S4_L003_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L003_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L003_R2_001.fastq.gz", "fastq fastq fastq", 15277905984.0, 81700032.0, "20200806 S4 Live 20200825NB S4 L003 I1 001.fastq.gz", "0:8 1:28 2:151", "A:3834498109;C:2745604041;G:2766967723;T:2989497144;N:137815", 8, 28, 151, null, 3834498109, 2745604041, 2766967723, 2989497144, 137815, "SRX17460720", "SRS15014531", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.90792, null, 0.06795, null, 0.88089, null, 0.75291, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Liver", "Liver and Biliary System"], [70710, "SRR21457016", "SRX17460717", "SRS15014528", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. 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R21049148-20210429-S3-R0-3_combined_R2.fastq.gz R21049148-20210429-S3-R0-4_combined_R1.fastq.gz R21049148-20210429-S3-R0-4_combined_R2.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 108860887800.0, 362869626.0, "R21049148 20210429 S3 R0 1 combined R1.fastq.gz", "0:150 1:150", "A:46078842047;C:20145501988;G:19787836142;T:22846772612;N:1935011", 150, 150, null, null, 46078842047, 20145501988, 19787836142, 22846772612, 1935011, "SRX20519420", "SRS17829368", "SRA1643264", "Institute of Developmental Biology and Regenerative Medicine|Southwest University", "Institute of Developmental Biology and Regenerative Medicine AccuraMed Company", 2, 0.0, 0.92113, 0.0, 0.15798, 1.0, 0.81215, null, 0.58532, 150, 150, "T", "B", "mate1 technical by mapping diff", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2023-05-25", "Zygote", "Embryo", "Liver", "Liver and Biliary System"], [75609, "SRR24742193", "SRX20519419", "SRS17829369", "SRP439656", "PRJNA975724", "Key factors in the process of biliary epithelial cells to bipotential progenitor cells dedifferentiation", "PRJNA975724", "Other", "Uncover the regulatory mechanisms underlying biliary cell dedifferentiation.", null, null, "The livers of fish were collected at 6 dpf", "scRNA seq of zebrafish 6 dpf livers", "Livers of lfabp:Dendra2 NTR fish at 6 dpf", null, "strain:ABGO|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:6 dpf|sex:pooled male and female|tissue:liver|birth location:China|collection date:2021 04 29|geo loc name:China: Chongqing|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish 6 dpf livers", "20210429 S2 D6", "20210429 S2 D6", "Using Chromium Single cell three prime GEM v3.1 Reagent kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP439656", null, null, "R21049147-20210429-S2-D6-1_combined_R1.fastq.gz R21049147-20210429-S2-D6-1_combined_R2.fastq.gz R21049147-20210429-S2-D6-2_combined_R1.fastq.gz R21049147-20210429-S2-D6-2_combined_R2.fastq.gz R21049147-20210429-S2-D6-3_combined_R1.fastq.gz R21049147-20210429-S2-D6-3_combined_R2.fastq.gz R21049147-20210429-S2-D6-4_combined_R1.fastq.gz R21049147-20210429-S2-D6-4_combined_R2.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 122319275400.0, 407730918.0, "R21049147 20210429 S2 D6 1 combined R1.fastq.gz", "0:150 1:150", "A:36198844657;C:27630980168;G:25561495158;T:32927451902;N:503515", 150, 150, null, null, 36198844657, 27630980168, 25561495158, 32927451902, 503515, "SRX20519419", "SRS17829369", "SRA1643264", "Institute of Developmental Biology and Regenerative Medicine|Southwest University", "Institute of Developmental Biology and Regenerative Medicine AccuraMed Company", 2, 0.00072, 0.9132, 0.00023, 0.11357, 0.99995, 0.88909, 0.5, 0.69408, 150, 150, "T", "B", "mate1 technical by mapping diff", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2023-05-25", "Larval", "Larval", "Liver", "Liver and Biliary System"]], "truncated": false, "filtered_table_rows_count": 6, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", 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