{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"Oligo-dT\", experiment.library_source = \"TRANSCRIPTOMIC SINGLE CELL\" and tissue_curation_coarse = \"Digestive System\"", "rows": [[70700, "SRR21457006", "SRX17460727", "SRS15014538", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Hepatized intestine in lbw S1 L002", null, "isolate:lbw/cdx1b mutant|dev stage:6 dpf|sex:female and male|tissue:hepatized intestine|aliquot:aliquot 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf lbw mutant intestine", "LG S1 L002  aliquot 2", "LG S1 L002  aliquot 2", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S1_LG_20200825NB_S1_L002_I1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L002_R1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L002_R2_001.fastq.gz", "fastq fastq fastq", 14193607989.0, 75901647.0, "20200806 S1 LG 20200825NB S1 L002 I1 001.fastq.gz", "0:8 1:28 2:151", "A:3301648645;C:2611036971;G:2734265669;T:2814086798;N:110614", 8, 28, 151, null, 3301648645, 2611036971, 2734265669, 2814086798, 110614, "SRX17460727", "SRS15014538", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.91108, null, 0.11686, null, 0.85557, null, 0.57466, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Gut", "Digestive System"], [70701, "SRR21457007", "SRX17460726", "SRS15014537", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Hepatized intestine in lbw S1 L001", null, "isolate:lbw/cdx1b mutant|dev stage:6 dpf|sex:female and male|tissue:hepatized intestine|aliquot:aliquot 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf lbw mutant intestine", "LG S1 L001  aliquot 1", "LG S1 L001  aliquot 1", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S1_LG_20200825NB_S1_L001_I1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L001_R1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L001_R2_001.fastq.gz", "fastq fastq fastq", 14182591632.0, 75842736.0, "20200806 S1 LG 20200825NB S1 L001 I1 001.fastq.gz", "0:8 1:28 2:151", "A:3299405296;C:2608368813;G:2735448901;T:2808939262;N:90864", 8, 28, 151, null, 3299405296, 2608368813, 2735448901, 2808939262, 90864, "SRX17460726", "SRS15014537", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.91027, null, 0.11587, null, 0.85587, null, 0.72332, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Gut", "Digestive System"], [70702, "SRR21457008", "SRX17460725", "SRS15014536", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. 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To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Intestine in the WT S2 L001", null, "isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:intestine|aliquot:aliquot 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf wild type intestine", "Gut S2 L001  aliquot 1", "Gut S2 L001  aliquot 1", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S2_Gut_20200825NB_S2_L001_I1_001.fastq.gz 20200806_S2_Gut_20200825NB_S2_L001_R1_001.fastq.gz 20200806_S2_Gut_20200825NB_S2_L001_R2_001.fastq.gz", "fastq fastq fastq", 16838878760.0, 90047480.0, "20200806 S2 Gut 20200825NB S2 L001 I1 001.fastq.gz", "0:8 1:28 2:151", "A:4115908576;C:3092172269;G:3039279605;T:3349698554;N:110476", 8, 28, 151, null, 4115908576, 3092172269, 3039279605, 3349698554, 110476, "SRX17460722", "SRS15014533", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.92762, null, 0.07664, null, 0.88172, null, 0.73829, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Gut", "Digestive System"], [70708, "SRR21457014", "SRX17460719", "SRS15014530", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Hepatized intestine in lbw S1 L004", null, "isolate:lbw/cdx1b mutant|dev stage:6 dpf|sex:female and male|tissue:hepatized intestine|aliquot:aliquot 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf lbw mutant intestine", "LG S1 L004  aliquot 4", "LG S1 L004  aliquot 4", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S1_LG_20200825NB_S1_L004_I1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L004_R1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L004_R2_001.fastq.gz", "fastq fastq fastq", 14467696881.0, 77367363.0, "20200806 S1 LG 20200825NB S1 L004 I1 001.fastq.gz", "0:8 1:28 2:151", "A:3365177661;C:2661264013;G:2793822598;T:2862129575;N:77966", 8, 28, 151, null, 3365177661, 2661264013, 2793822598, 2862129575, 77966, "SRX17460719", "SRS15014530", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.90564, null, 0.11415, null, 0.85669, null, 0.72469, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Gut", "Digestive System"], [70709, "SRR21457015", "SRX17460718", "SRS15014529", "SRP385641", "PRJNA857143", "Single cell transcriptomic data of zebrafish lbw mutant", "PRJNA857143", "Other", "Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.", null, null, null, null, "Hepatized intestine in lbw S1 L003", null, "isolate:lbw/cdx1b mutant|dev stage:6 dpf|sex:female and male|tissue:hepatized intestine|aliquot:aliquot 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish: 6 dpf lbw mutant intestine", "LG S1 L003  aliquot 3", "LG S1 L003  aliquot 3", "using Chromium Single Cell three prime GEM v3.1 Reagent Kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP385641", null, null, "20200806_S1_LG_20200825NB_S1_L003_R1_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L003_R2_001.fastq.gz 20200806_S1_LG_20200825NB_S1_L003_I1_001.fastq.gz", "fastq fastq fastq", 14438452138.0, 77210974.0, "20200806 S1 LG 20200825NB S1 L003 I1 001.fastq.gz", "0:8 1:28 2:151", "A:3354566334;C:2659200277;G:2787479629;T:2857478988;N:131846", 8, 28, 151, null, 3354566334, 2659200277, 2787479629, 2857478988, 131846, "SRX17460718", "SRS15014529", "SRA1491985", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 1, 0.90915, null, 0.11415, null, 0.85427, null, 0.7235, null, 151, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2022-09-11", "Larval", "Larval", "Gut", "Digestive System"], [75099, "SRR24295703", "SRX20091106", "SRS17422802", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. 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To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S3 S0hpt S8 L004 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 0 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 7|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 0 hpt", "20201026 S3 S0hpt S8 L004 R1 001", "20201026 S3 S0hpt S8 L004 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 28 bp UMI. 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To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S3 S0hpt S8 L003 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 0 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 0 hpt", "20201026 S3 S0hpt S8 L003 R1 001", "20201026 S3 S0hpt S8 L003 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 26 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S3_S0hpt_S8_L003_R1_001.fastq.gz 20201026_S3_S0hpt_S8_L003_R2_001.fastq.gz", "fastq fastq", 11318791667.0, 63233473.0, "20201026 S3 S0hpt S8 L003 R1 001.fastq.gz", "0:28 1:151", "A:3185910303;C:2527965947;G:2631985020;T:2972741298;N:189099", 28, 151, null, null, 3185910303, 2527965947, 2631985020, 2972741298, 189099, "SRX20091104", "SRS17422800", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00736, 0.92879, 0.00199, 0.10456, 0.98827, 0.81643, 0.49224, 0.57699, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75102, "SRR24295706", "SRX20091103", "SRS17422798", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S3 S0hpt S8 L002 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 0 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 0 hpt", "20201026 S3 S0hpt S8 L002 R1 001", "20201026 S3 S0hpt S8 L002 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 24 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S3_S0hpt_S8_L002_R1_001.fastq.gz 20201026_S3_S0hpt_S8_L002_R2_001.fastq.gz", "fastq fastq", 11212565191.0, 62640029.0, "20201026 S3 S0hpt S8 L002 R1 001.fastq.gz", "0:28 1:151", "A:3151088961;C:2508604162;G:2610615892;T:2942050613;N:205563", 28, 151, null, null, 3151088961, 2508604162, 2610615892, 2942050613, 205563, "SRX20091103", "SRS17422798", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00781, 0.92808, 0.00205, 0.10455, 0.98744, 0.81489, 0.50675, 0.61614, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75103, "SRR24295707", "SRX20091102", "SRS17422799", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S3 S0hpt S8 L001 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 0 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 0 hpt", "20201026 S3 S0hpt S8 L001 R1 001", "20201026 S3 S0hpt S8 L001 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 22 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S3_S0hpt_S8_L001_R1_001.fastq.gz 20201026_S3_S0hpt_S8_L001_R2_001.fastq.gz", "fastq fastq", 11551003355.0, 64530745.0, "20201026 S3 S0hpt S8 L001 R1 001.fastq.gz", "0:28 1:151", "A:3248866155;C:2582279236;G:2687784274;T:3031856357;N:217333", 28, 151, null, null, 3248866155, 2582279236, 2687784274, 3031856357, 217333, "SRX20091102", "SRS17422799", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00773, 0.92693, 0.00213, 0.10378, 0.98796, 0.81458, 0.48003, 0.61476, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75104, "SRR24295708", "SRX20091101", "SRS17422797", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S1 BF S24 L003 R1 001.fastq", null, "strain:not applicable|dev stage:7 dpf|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 9|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: BT", "20201026 S1 BF S24 L003 R1 001", "20201026 S1 BF S24 L003 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 20 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S1_BF_S24_L003_R1_001.fastq.gz 20201026_S1_BF_S24_L003_R2_001.fastq.gz", "fastq fastq", 16924465573.0, 94550087.0, "20201026 S1 BF S24 L003 R1 001.fastq.gz", "0:28 1:151", "A:4886602093;C:3870736671;G:3757579268;T:4409430253;N:117288", 28, 151, null, null, 4886602093, 3870736671, 3757579268, 4409430253, 117288, "SRX20091101", "SRS17422797", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00762, 0.94081, 0.00182, 0.08601, 0.99194, 0.85859, 0.65178, 0.72774, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Larval", "Larval", "Gut", "Digestive System"], [75105, "SRR24295709", "SRX20091100", "SRS17422796", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S1 BF S6 L004 R1 001.fastq", null, "strain:not applicable|dev stage:7 dpf|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 7|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: BT", "20201026 S1 BF S6 L004 R1 001", "20201026 S1 BF S6 L004 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 18 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S1_BF_S6_L004_R1_001.fastq.gz 20201026_S1_BF_S6_L004_R2_001.fastq.gz", "fastq fastq", 9841936415.0, 54982885.0, "20201026 S1 BF S6 L004 R1 001.fastq.gz", "0:28 1:151", "A:2834721114;C:2252697251;G:2189518877;T:2564845090;N:154083", 28, 151, null, null, 2834721114, 2252697251, 2189518877, 2564845090, 154083, "SRX20091100", "SRS17422796", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00786, 0.93893, 0.00204, 0.08672, 0.99178, 0.85886, 0.66488, 0.71597, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Larval", "Larval", "Gut", "Digestive System"], [75106, "SRR24295710", "SRX20091099", "SRS17422795", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S1 BF S6 L003 R1 001.fastq", null, "strain:not applicable|dev stage:7 dpf|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: BT", "20201026 S1 BF S6 L003 R1 001", "20201026 S1 BF S6 L003 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 16 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S1_BF_S6_L003_R1_001.fastq.gz 20201026_S1_BF_S6_L003_R2_001.fastq.gz", "fastq fastq", 9794371998.0, 54717162.0, "20201026 S1 BF S6 L003 R1 001.fastq.gz", "0:28 1:151", "A:2825540725;C:2236862920;G:2175038375;T:2556767328;N:162650", 28, 151, null, null, 2825540725, 2236862920, 2175038375, 2556767328, 162650, "SRX20091099", "SRS17422795", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00746, 0.9385, 0.00178, 0.08677, 0.99226, 0.8621, 0.68194, 0.72039, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Larval", "Larval", "Gut", "Digestive System"], [75107, "SRR24295711", "SRX20091098", "SRS17422794", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S2 S48hpt S25 L003 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 48 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 9|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 48 hpt", "20201026 S2 S48hpt S25 L003 R1 001", "20201026 S2 S48hpt S25 L003 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 40 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S2_S48hpt_S25_L003_R1_001.fastq.gz 20201026_S2_S48hpt_S25_L003_R2_001.fastq.gz", "fastq fastq", 14964717009.0, 83601771.0, "20201026 S2 S48hpt S25 L003 R1 001.fastq.gz", "0:28 1:151", "A:4042811725;C:3465477701;G:3602852950;T:3853470560;N:104073", 28, 151, null, null, 4042811725, 3465477701, 3602852950, 3853470560, 104073, "SRX20091098", "SRS17422794", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00811, 0.9409, 0.00196, 0.08687, 0.98922, 0.85001, 0.51973, 0.65526, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75108, "SRR24295712", "SRX20091097", "SRS17422793", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S2 S48hpt S7 L004 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 48 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 7|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 48 hpt", "20201026 S2 S48hpt S7 L004 R1 001", "20201026 S2 S48hpt S7 L004 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 38 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S2_S48hpt_S7_L004_R1_001.fastq.gz 20201026_S2_S48hpt_S7_L004_R2_001.fastq.gz", "fastq fastq", 10669333843.0, 59605217.0, "20201026 S2 S48hpt S7 L004 R1 001.fastq.gz", "0:28 1:151", "A:2876329901;C:2471017739;G:2573143323;T:2748679474;N:163406", 28, 151, null, null, 2876329901, 2471017739, 2573143323, 2748679474, 163406, "SRX20091097", "SRS17422793", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00841, 0.93868, 0.00188, 0.08847, 0.98879, 0.85149, 0.54358, 0.6538, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75109, "SRR24295713", "SRX20091096", "SRS17422791", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S2 S48hpt S7 L003 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 48 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 48 hpt", "20201026 S2 S48hpt S7 L003 R1 001", "20201026 S2 S48hpt S7 L003 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 36 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S2_S48hpt_S7_L003_R1_001.fastq.gz 20201026_S2_S48hpt_S7_L003_R2_001.fastq.gz", "fastq fastq", 10613956434.0, 59295846.0, "20201026 S2 S48hpt S7 L003 R1 001.fastq.gz", "0:28 1:151", "A:2867387827;C:2453215650;G:2555390367;T:2737785596;N:176994", 28, 151, null, null, 2867387827, 2453215650, 2555390367, 2737785596, 176994, "SRX20091096", "SRS17422791", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00804, 0.93909, 0.00204, 0.09014, 0.98912, 0.85289, 0.53052, 0.65123, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75110, "SRR24295714", "SRX20091095", "SRS17422792", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S2 S48hpt S7 L002 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 48 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 48 hpt", "20201026 S2 S48hpt S7 L002 R1 001", "20201026 S2 S48hpt S7 L002 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 34 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP434294", null, null, "20201026_S2_S48hpt_S7_L002_R1_001.fastq.gz 20201026_S2_S48hpt_S7_L002_R2_001.fastq.gz", "fastq fastq", 10590029325.0, 59162175.0, "20201026 S2 S48hpt S7 L002 R1 001.fastq.gz", "0:28 1:151", "A:2855935581;C:2451968029;G:2552761582;T:2729169108;N:195025", 28, 151, null, null, 2855935581, 2451968029, 2552761582, 2729169108, 195025, "SRX20091095", "SRS17422792", "SRA1626787", "Southwest University|Institute of Developmental Biology and Regenerativ", "Southwest University", 2, 0.00831, 0.93901, 0.00202, 0.0879, 0.98942, 0.85072, 0.5438, 0.66125, 28, 151, "T", "B", "sc-like readlen", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "sc", "single_cell_droplet", "10x", null, "China", "2023-04-25", "Undetermined", "Undetermined", "Gut", "Digestive System"], [75111, "SRR24295715", "SRX20091094", "SRS17422790", "SRP434294", "PRJNA961336", "Single cell transcriptome sequence of intestinal regeneration in zebrafish", "PRJNA961336", "Other", "The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism  we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.", null, null, null, null, "20201026 S2 S48hpt S7 L001 R1 001.fastq", null, "strain:not applicable|dev stage:MTZ 48 hpt|sex:pooled male and female|tissue:intestine|collection date:2020 10 26|geo loc name:China:Chongqing|replicate:replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA seq of zebrafish intestine: MTZ 48 hpt", "20201026 S2 S48hpt S7 L001 R1 001", "20201026 S2 S48hpt S7 L001 R1 001", "Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1  while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 32 bp UMI. 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