{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_selection = \"CAGE\", experiment.library_source = \"TRANSCRIPTOMIC\" and tissue_curation = \"Embryo Imprecise\"", "rows": [[36409, "SRR516560", "SRX156356", "SRS347213", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo prim20 stage", "D. rerio prim20 embryo", "D. rerio prim20 embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio prim20 embryo", "CAGE   D. rerio prim20 embryo run2", "D. rerio prim20 embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_prim20_run1.fastq", "fastq", 76770666.0, 2843358.0, "CAGE   D. rerio prim20 embryo run1", "0:27", "A:19320047;C:17585086;G:22511175;T:17354358;N:0", 27, null, null, null, 19320047, 17585086, 22511175, 17354358, 0, "SRX156356", "SRS347213", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.56472, null, 0.10044, null, 0.77469, null, 0.74192, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Undetermined", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36410, "SRR516561", "SRX156356", "SRS347213", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo prim20 stage", "D. rerio prim20 embryo", "D. rerio prim20 embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio prim20 embryo", "CAGE   D. rerio prim20 embryo run2", "D. rerio prim20 embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_prim20_run2.fastq", "fastq", 163254906.0, 6046478.0, "CAGE   D. rerio prim20 embryo run2", "0:27", "A:40211042;C:36959797;G:46866669;T:39217398;N:0", 27, null, null, null, 40211042, 36959797, 46866669, 39217398, 0, "SRX156356", "SRS347213", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.47475, null, 0.06947, null, 0.78409, null, 0.78014, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2013-08-31", "Undetermined", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36411, "SRR516559", "SRX156355", "SRS347212", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo prim6 stage", "D. rerio prim6 embryo", "D. rerio prim6 embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio prim6 embryo", "CAGE   D. rerio prim6 embryo", "D. rerio prim6 embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_prim6.fastq", "fastq", 283414275.0, 10496825.0, "CAGE   D. rerio prim6 embryo", "0:27", "A:70974303;C:66202040;G:80064124;T:66173808;N:0", 27, null, null, null, 70974303, 66202040, 80064124, 66173808, 0, "SRX156355", "SRS347212", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.53395, null, 0.07806, null, 0.78255, null, 0.77575, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2013-08-31", "Undetermined", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36412, "SRR516557", "SRX156352", "SRS347211", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo 14 somites stage", "D. rerio 14 somites embryo", "D. rerio 14 somites embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio 14 somites embryo", "CAGE   D. rerio 14 somites embryo run2", "D. rerio 14 somites embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, null, null, 73689048.0, 2729224.0, "CAGE   D. rerio 14 somites embryo run1", "0:27", "A:19506796;C:16238588;G:21636330;T:16307334;N:0", 27, null, null, null, 19506796, 16238588, 21636330, 16307334, 0, "SRX156352", "SRS347211", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.63348, null, 0.09461, null, 0.76199, null, 0.68697, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36413, "SRR516558", "SRX156352", "SRS347211", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo 14 somites stage", "D. rerio 14 somites embryo", "D. rerio 14 somites embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio 14 somites embryo", "CAGE   D. rerio 14 somites embryo run2", "D. rerio 14 somites embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_14somites_run2.fastq", "fastq", 212381811.0, 7865993.0, "CAGE   D. rerio 14 somites embryo run2", "0:27", "A:53780820;C:47467464;G:59893810;T:51239717;N:0", 27, null, null, null, 53780820, 47467464, 59893810, 51239717, 0, "SRX156352", "SRS347211", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.5278, null, 0.0806, null, 0.77589, null, 0.72881, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36414, "SRR516555", "SRX156350", "SRS347210", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo shield stage", "D. rerio shield embryo", "D. rerio shield embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio shield embryo", "CAGE   D. rerio shield embryo run2", "D. rerio shield embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, null, null, 81086886.0, 3003218.0, "CAGE   D. rerio shield embryo run1", "0:27", "A:20800196;C:18582826;G:23491216;T:18212648;N:0", 27, null, null, null, 20800196, 18582826, 23491216, 18212648, 0, "SRX156350", "SRS347210", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.60434, null, 0.09948, null, 0.80432, null, 0.72631, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Gastrula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36415, "SRR516556", "SRX156350", "SRS347210", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo shield stage", "D. rerio shield embryo", "D. rerio shield embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio shield embryo", "CAGE   D. rerio shield embryo run2", "D. rerio shield embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_shield_run2.fastq", "fastq", 81675891.0, 3025033.0, "CAGE   D. rerio shield embryo run2", "0:27", "A:21590166;C:17662459;G:22692127;T:19731139;N:0", 27, null, null, null, 21590166, 17662459, 22692127, 19731139, 0, "SRX156350", "SRS347210", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.52624, null, 0.08062, null, 0.81793, null, 0.76291, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Gastrula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36416, "SRR516554", "SRX156349", "SRS347209", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo dome/zfs:0000015 stage", "D. rerio dome/zfs:0000015 embryo", "D. rerio dome/zfs:0000015 embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio dome/zfs:0000015 embryo", "CAGE   D. rerio dome/zfs:0000015 embryo", "D. rerio dome/zfs:0000015 embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_30p_dome.fastq", "fastq", 165690819.0, 6136697.0, "CAGE   D. rerio dome/zfs:0000015 embryo", "0:27", "A:42721293;C:36492232;G:46154926;T:40322368;N:0", 27, null, null, null, 42721293, 36492232, 46154926, 40322368, 0, "SRX156349", "SRS347209", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.50236, null, 0.0905, null, 0.81824, null, 0.8156, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36417, "SRR516552", "SRX156347", "SRS347208", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo sphere/dome stage", "D. rerio sphere/dome embryo", "D. rerio sphere/dome embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio sphere/dome embryo", "CAGE   D. rerio sphere/dome embryo run2", "D. rerio sphere/dome embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_sphere_dome_run1.fastq", "fastq", 78937740.0, 2923620.0, "CAGE   D. rerio sphere/dome embryo run1", "0:27", "A:20705496;C:17020957;G:22237043;T:18974244;N:0", 27, null, null, null, 20705496, 17020957, 22237043, 18974244, 0, "SRX156347", "SRS347208", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.50917, null, 0.09193, null, 0.81523, null, 0.8084, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36418, "SRR516553", "SRX156347", "SRS347208", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo sphere/dome stage", "D. rerio sphere/dome embryo", "D. rerio sphere/dome embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio sphere/dome embryo", "CAGE   D. rerio sphere/dome embryo run2", "D. rerio sphere/dome embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_sphere_dome_run2.fastq", "fastq", 82071009.0, 3039667.0, "CAGE   D. rerio sphere/dome embryo run2", "0:27", "A:20823133;C:17914934;G:22973465;T:20359477;N:0", 27, null, null, null, 20823133, 17914934, 22973465, 20359477, 0, "SRX156347", "SRS347208", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.47213, null, 0.07583, null, 0.82384, null, 0.8313, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36419, "SRR516551", "SRX156338", "SRS347207", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo oblong stage", "D. rerio oblong embryo", "D. rerio oblong embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio oblong embryo", "CAGE   D. rerio oblong embryo", "D. rerio oblong embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, null, null, 135892080.0, 5033040.0, "CAGE   D. rerio oblong embryo", "0:27", "A:34565898;C:30442218;G:38967845;T:31916119;N:0", 27, null, null, null, 34565898, 30442218, 38967845, 31916119, 0, "SRX156338", "SRS347207", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.56265, null, 0.09335, null, 0.80068, null, 0.70759, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36420, "SRR516550", "SRX156337", "SRS347206", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo high stage", "D. rerio high embryo", "D. rerio high embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio high embryo", "CAGE   D. rerio high embryo", "D. rerio high embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_high.fastq", "fastq", 128592846.0, 4762698.0, "CAGE   D. rerio high embryo", "0:27", "A:33693838;C:27629256;G:36692263;T:30577489;N:0", 27, null, null, null, 33693838, 27629256, 36692263, 30577489, 0, "SRX156337", "SRS347206", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.53282, null, 0.08323, null, 0.80854, null, 0.77395, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2013-08-31", "Undetermined", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36421, "SRR516549", "SRX156336", "SRS347204", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo 512 cells stage", "D. rerio 512 cells embryo", "D. rerio 512 cells embyo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio 512 cells embryo", "CAGE   D. rerio 512 cells embryo", "D. rerio 512 cells embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_512cells.fastq", "fastq", 150228810.0, 5564030.0, "CAGE   D. rerio 512 cells embryo", "0:27", "A:37826960;C:33838922;G:43403014;T:35159914;N:0", 27, null, null, null, 37826960, 33838922, 43403014, 35159914, 0, "SRX156336", "SRS347204", "SRA055273", "University of Bergen", "ZEPROME consortium", 1, 0.57925, null, 0.08753, null, 0.79933, null, 0.72579, null, 27, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2012-06-28", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [36422, "SRR516548", "SRX156334", "SRS347202", "SRP013950", "PRJNA169500", "Danio rerio embryonic promoterome", "PRJNA169500", "Transcriptome Analysis", "Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.", null, "pubmed:24531765", "Zebrafish wild type AB strain   embryo 64 cells stage", "D. rerio 64 cells embryo", "D. rerio 64 cells embryo", null, null, null, null, null, null, null, null, null, null, "CAGE   D. rerio 64 cells embryo", "CAGE   D. rerio 64 cells embryo", "D. rerio 64 cells embryo", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer IIx", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP013950", null, null, "CAGE_64cells.fastq", "fastq", 162784188.0, 6029044.0, "CAGE   D. rerio 64 cells embryo", "0:27", "A:41192860;C:36547869;G:46848833;T:38194626;N:0", 27, null, null, null, 41192860, 36547869, 46848833, 38194626, 0, "SRX156334", "SRS347202", "SRA055273", "University of Bergen", "ZEPROME consortium", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2013-08-31", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69378, "SRR18516702", "SRX14647801", "SRS12413210", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007475BS", null, "strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq zfs:0000015 Whole cell CAGE", "DCD003740SQ", "DCD003740SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003740SQ.USERdanio-user.R1.fastq.gz", "fastq", 57981552.0, 1207949.0, "CAGE seq Mueller lab 0013AS.DCD003740SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:13228227;C:15492921;G:15505739;T:13750626;N:4039", 48, 0, null, null, 13228227, 15492921, 15505739, 13750626, 4039, "SRX14647801", "SRS12413210", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.18388, null, 0.02619, null, 0.85811, null, 0.52264, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69379, "SRR18516703", "SRX14647800", "SRS12413216", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007476BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Nuclear CAGE", "DCD003719SQ", "DCD003719SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003719SQ.USERdanio-user.R1.fastq.gz", "fastq", 585510192.0, 12198129.0, "CAGE seq Mueller lab 0014AS.DCD003719SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:129885703;C:153766182;G:160138903;T:141666883;N:52521", 48, 0, null, null, 129885703, 153766182, 160138903, 141666883, 52521, "SRX14647800", "SRS12413216", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.20391, null, 0.04196, null, 0.83453, null, 0.4979, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69380, "SRR18516704", "SRX14647799", "SRS12413216", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007476BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Nuclear CAGE", "DCD003718SQ", "DCD003718SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003718SQ.USERdanio-user.R1.fastq.gz", "fastq", 593136528.0, 12357011.0, "CAGE seq Mueller lab 0014AS.DCD003718SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:130366174;C:156810351;G:159219365;T:146691922;N:48716", 48, 0, null, null, 130366174, 156810351, 159219365, 146691922, 48716, "SRX14647799", "SRS12413216", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.14873, null, 0.03239, null, 0.86557, null, 0.49634, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69381, "SRR18516705", "SRX14647798", "SRS12413216", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007476BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Nuclear CAGE", "DCD003723SQ", "DCD003723SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003723SQ.USERdanio-user.R1.fastq.gz", "fastq", 422696256.0, 8806172.0, "CAGE seq Mueller lab 0014AS.DCD003723SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:92712632;C:111696999;G:115145846;T:103105611;N:35168", 48, 0, null, null, 92712632, 111696999, 115145846, 103105611, 35168, "SRX14647798", "SRS12413216", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.1594, null, 0.02997, null, 0.85591, null, 0.48496, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69382, "SRR18516706", "SRX14647797", "SRS12413215", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007477BS", null, "strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq High pec Nuclear CAGE", "DCD003737SQ", "DCD003737SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003737SQ.USERdanio-user.R1.fastq.gz", "fastq", 1041108672.0, 21689764.0, "CAGE seq Mueller lab 0014AS.DCD003737SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:233996885;C:276232291;G:275987771;T:254800016;N:91709", 48, 0, null, null, 233996885, 276232291, 275987771, 254800016, 91709, "SRX14647797", "SRS12413215", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.19665, null, 0.0423, null, 0.84271, null, 0.49525, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69383, "SRR18516707", "SRX14647796", "SRS12413215", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007477BS", null, "strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq High pec Nuclear CAGE", "DCD003729SQ", "DCD003729SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003729SQ.USERdanio-user.R1.fastq.gz", "fastq", 383268528.0, 7984761.0, "CAGE seq Mueller lab 0014AS.DCD003729SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:83789437;C:103371728;G:102876480;T:93198236;N:32647", 48, 0, null, null, 83789437, 103371728, 102876480, 93198236, 32647, "SRX14647796", "SRS12413215", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.15605, null, 0.03059, null, 0.86951, null, 0.50369, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69384, "SRR18516708", "SRX14647795", "SRS12413215", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007477BS", null, "strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq High pec Nuclear CAGE", "DCD003734SQ", "DCD003734SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003734SQ.USERdanio-user.R1.fastq.gz", "fastq", 560665392.0, 11680529.0, "CAGE seq Mueller lab 0014AS.DCD003734SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:123278501;C:149059346;G:152514412;T:135763704;N:49429", 48, 0, null, null, 123278501, 149059346, 152514412, 135763704, 49429, "SRX14647795", "SRS12413215", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.16518, null, 0.02906, null, 0.85283, null, 0.47924, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69385, "SRR18516709", "SRX14647794", "SRS12413214", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007471BS", null, "strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq High pec Whole cell CAGE", "DCD003731SQ", "DCD003731SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003731SQ.USERdanio-user.R1.fastq.gz", "fastq", 534745104.0, 11140523.0, "CAGE seq Mueller lab 0013AS.DCD003731SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:122900964;C:145291239;G:142314928;T:124199394;N:38579", 48, 0, null, null, 122900964, 145291239, 142314928, 124199394, 38579, "SRX14647794", "SRS12413214", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.21193, null, 0.03662, null, 0.8576, null, 0.51061, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69386, "SRR18516710", "SRX14647793", "SRS12413214", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007471BS", null, "strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq High pec Whole cell CAGE", "DCD003733SQ", "DCD003733SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003733SQ.USERdanio-user.R1.fastq.gz", "fastq", 1106623152.0, 23054649.0, "CAGE seq Mueller lab 0013AS.DCD003733SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:244437769;C:302018709;G:293780395;T:266329857;N:56422", 48, 0, null, null, 244437769, 302018709, 293780395, 266329857, 56422, "SRX14647793", "SRS12413214", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.25973, null, 0.02959, null, 0.84778, null, 0.50948, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69387, "SRR18516711", "SRX14647792", "SRS12413214", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007471BS", null, "strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq High pec Whole cell CAGE", "DCD003735SQ", "DCD003735SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003735SQ.USERdanio-user.R1.fastq.gz", "fastq", 829987920.0, 17291415.0, "CAGE seq Mueller lab 0013AS.DCD003735SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:189638839;C:226118233;G:218991435;T:195178858;N:60555", 48, 0, null, null, 189638839, 226118233, 218991435, 195178858, 60555, "SRX14647792", "SRS12413214", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.20953, null, 0.03562, null, 0.85285, null, 0.52927, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69388, "SRR18516712", "SRX14647791", "SRS12413213", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007472BS", null, "strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq 5 9 somites Whole cell CAGE", "DCD003730SQ", "DCD003730SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003730SQ.USERdanio-user.R1.fastq.gz", "fastq", 358730736.0, 7473557.0, "CAGE seq Mueller lab 0013AS.DCD003730SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:82114871;C:96481695;G:97889447;T:82217691;N:27032", 48, 0, null, null, 82114871, 96481695, 97889447, 82217691, 27032, "SRX14647791", "SRS12413213", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.22955, null, 0.03488, null, 0.84719, null, 0.51204, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69389, "SRR18516713", "SRX14647790", "SRS12413209", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007478BS", null, "strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq zfs:0000015 Nuclear CAGE", "DCD003732SQ", "DCD003732SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003732SQ.USERdanio-user.R1.fastq.gz", "fastq", 833831760.0, 17371495.0, "CAGE seq Mueller lab 0014AS.DCD003732SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:184529953;C:221676233;G:220734592;T:206820467;N:70515", 48, 0, null, null, 184529953, 221676233, 220734592, 206820467, 70515, "SRX14647790", "SRS12413209", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.16336, null, 0.03655, null, 0.88633, null, 0.47894, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69390, "SRR18516714", "SRX14647789", "SRS12413213", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007472BS", null, "strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq 5 9 somites Whole cell CAGE", "DCD003738SQ", "DCD003738SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003738SQ.USERdanio-user.R1.fastq.gz", "fastq", 1160622288.0, 24179631.0, "CAGE seq Mueller lab 0013AS.DCD003738SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:261568282;C:313737609;G:310169539;T:275088632;N:58226", 48, 0, null, null, 261568282, 313737609, 310169539, 275088632, 58226, "SRX14647789", "SRS12413213", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.27025, null, 0.0344, null, 0.86505, null, 0.50961, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69391, "SRR18516715", "SRX14647788", "SRS12413213", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007472BS", null, "strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq 5 9 somites Whole cell CAGE", "DCD003722SQ", "DCD003722SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003722SQ.USERdanio-user.R1.fastq.gz", "fastq", 666656256.0, 13888672.0, "CAGE seq Mueller lab 0013AS.DCD003722SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:149770159;C:178068662;G:177661463;T:161122864;N:33108", 48, 0, null, null, 149770159, 178068662, 177661463, 161122864, 33108, "SRX14647788", "SRS12413213", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.25511, null, 0.02671, null, 0.86436, null, 0.50531, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69392, "SRR18516716", "SRX14647787", "SRS12413212", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007473BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Whole cell CAGE", "DCD003727SQ", "DCD003727SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003727SQ.USERdanio-user.R1.fastq.gz", "fastq", 924879888.0, 19268331.0, "CAGE seq Mueller lab 0013AS.DCD003727SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:214005056;C:251321459;G:244648845;T:214835794;N:68734", 48, 0, null, null, 214005056, 251321459, 244648845, 214835794, 68734, "SRX14647787", "SRS12413212", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.2165, null, 0.03701, null, 0.84768, null, 0.54102, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69393, "SRR18516717", "SRX14647786", "SRS12413212", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007473BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Whole cell CAGE", "DCD003717SQ", "DCD003717SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003717SQ.USERdanio-user.R1.fastq.gz", "fastq", 1485845376.0, 30955112.0, "CAGE seq Mueller lab 0013AS.DCD003717SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:329122121;C:402514173;G:390388645;T:363745867;N:74570", 48, 0, null, null, 329122121, 402514173, 390388645, 363745867, 74570, "SRX14647786", "SRS12413212", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.23893, null, 0.0248, null, 0.86125, null, 0.50849, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69394, "SRR18516718", "SRX14647785", "SRS12413212", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007473BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Whole cell CAGE", "DCD003739SQ", "DCD003739SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003739SQ.USERdanio-user.R1.fastq.gz", "fastq", 1372622736.0, 28596307.0, "CAGE seq Mueller lab 0013AS.DCD003739SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:306709302;C:373224967;G:360990874;T:331626639;N:70954", 48, 0, null, null, 306709302, 373224967, 360990874, 331626639, 70954, "SRX14647785", "SRS12413212", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.26574, null, 0.02914, null, 0.85113, null, 0.52147, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69395, "SRR18516719", "SRX14647784", "SRS12413211", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007474BS", null, "strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq 5 9 somites Nuclear CAGE", "DCD003721SQ", "DCD003721SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003721SQ.USERdanio-user.R1.fastq.gz", "fastq", 425483904.0, 8864248.0, "CAGE seq Mueller lab 0014AS.DCD003721SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:98642418;C:114264552;G:114112965;T:98433833;N:30136", 48, 0, null, null, 98642418, 114264552, 114112965, 98433833, 30136, "SRX14647784", "SRS12413211", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.21658, null, 0.03797, null, 0.85226, null, 0.48604, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69396, "SRR18516720", "SRX14647783", "SRS12413211", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007474BS", null, "strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq 5 9 somites Nuclear CAGE", "DCD003736SQ", "DCD003736SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003736SQ.USERdanio-user.R1.fastq.gz", "fastq", 533681088.0, 11118356.0, "CAGE seq Mueller lab 0014AS.DCD003736SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:115850766;C:142773032;G:143794343;T:131220159;N:42788", 48, 0, null, null, 115850766, 142773032, 143794343, 131220159, 42788, "SRX14647783", "SRS12413211", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.15054, null, 0.0279, null, 0.87434, null, 0.4867, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69397, "SRR18516721", "SRX14647782", "SRS12413211", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007474BS", null, "strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq 5 9 somites Nuclear CAGE", "DCD003726SQ", "DCD003726SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003726SQ.USERdanio-user.R1.fastq.gz", "fastq", 250307520.0, 5214740.0, "CAGE seq Mueller lab 0014AS.DCD003726SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:55705158;C:65429159;G:68119770;T:61031856;N:21577", 48, 0, null, null, 55705158, 65429159, 68119770, 61031856, 21577, "SRX14647782", "SRS12413211", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.19864, null, 0.04157, null, 0.85279, null, 0.48786, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Segmentation", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69398, "SRR18516722", "SRX14647781", "SRS12413210", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007475BS", null, "strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq zfs:0000015 Whole cell CAGE", "DCD003720SQ", "DCD003720SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003720SQ.USERdanio-user.R1.fastq.gz", "fastq", 536292432.0, 11172759.0, "CAGE seq Mueller lab 0013AS.DCD003720SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:122756671;C:142850582;G:140364671;T:130293257;N:27251", 48, 0, null, null, 122756671, 142850582, 140364671, 130293257, 27251, "SRX14647781", "SRS12413210", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.23072, null, 0.04674, null, 0.89572, null, 0.59187, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69399, "SRR18516723", "SRX14647780", "SRS12413210", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007475BS", null, "strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq zfs:0000015 Whole cell CAGE", "DCD003725SQ", "DCD003725SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003725SQ.USERdanio-user.R1.fastq.gz", "fastq", 1839979776.0, 38332912.0, "CAGE seq Mueller lab 0013AS.DCD003725SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:422772310;C:484519947;G:479159876;T:453437875;N:89768", 48, 0, null, null, 422772310, 484519947, 479159876, 453437875, 89768, "SRX14647780", "SRS12413210", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.22646, null, 0.03978, null, 0.88574, null, 0.556, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69400, "SRR18516724", "SRX14647779", "SRS12413209", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007478BS", null, "strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq zfs:0000015 Nuclear CAGE", "DCD003728SQ", "DCD003728SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003728SQ.USERdanio-user.R1.fastq.gz", "fastq", 778510272.0, 16218964.0, "CAGE seq Mueller lab 0014AS.DCD003728SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:170505572;C:207531743;G:206655879;T:193751108;N:65970", 48, 0, null, null, 170505572, 207531743, 206655879, 193751108, 65970, "SRX14647779", "SRS12413209", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.1419, null, 0.02783, null, 0.8954, null, 0.49693, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"], [69401, "SRR18516725", "SRX14647778", "SRS12413209", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007478BS", null, "strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq zfs:0000015 Nuclear CAGE", "DCD003724SQ", "DCD003724SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0014AS.DCD003724SQ.USERdanio-user.R1.fastq.gz", "fastq", 641108496.0, 13356427.0, "CAGE seq Mueller lab 0014AS.DCD003724SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:143927298;C:167543966;G:171107575;T:158473503;N:56154", 48, 0, null, null, 143927298, 167543966, 171107575, 158473503, 56154, "SRX14647778", "SRS12413209", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.20203, null, 0.0454, null, 0.87091, null, 0.51364, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"]], "truncated": false, "filtered_table_rows_count": 38, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_selection\" = :p0 and \"experiment.library_source\" = :p1 and \"tissue_curation\" = :p2 order by rowid limit 101", "params": {"p0": "CAGE", "p1": "TRANSCRIPTOMIC", "p2": "Embryo Imprecise"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&experiment.library_strategy=RNA-Seq", "selected": false}, {"value": "OTHER", "label": "OTHER", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&experiment.library_strategy=OTHER", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&tissue_curation=Embryo+Imprecise", "selected": true}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "CAGE", "label": "CAGE", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "SINGLE", "label": "SINGLE", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&experiment.platform=ILLUMINA", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "Embryo", "label": "Embryo", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation_coarse=Embryo", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "Pharyngula", "label": "Pharyngula", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation=Pharyngula", "selected": false}, {"value": "Blastula", "label": "Blastula", "count": 11, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation=Blastula", "selected": false}, {"value": "Segmentation", "label": "Segmentation", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation=Segmentation", "selected": false}, {"value": "Undetermined", "label": "Undetermined", "count": 4, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation=Undetermined", "selected": false}, {"value": "Gastrula", "label": "Gastrula", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation=Gastrula", "selected": false}, {"value": "Cleavage", "label": "Cleavage", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&devstage_curation=Cleavage", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "All anatomical structures", "label": "All anatomical structures", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&tissue_curation_coarse=All+anatomical+structures", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "Embryo Imprecise", "label": "Embryo Imprecise", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC", "selected": true}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise", "results": [{"value": "unknown", "label": "unknown", "count": 38, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=CAGE&experiment.library_source=TRANSCRIPTOMIC&tissue_curation=Embryo+Imprecise&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 71.77014497574419}