{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"SINGLE\", experiment.library_strategy = \"ncRNA-Seq\" and tissue_curation_coarse = \"Nervous System\"", "rows": [[48990, "SRR7612999", "SRX4477699", "SRS3602899", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 156 ZF brain smallRNAseq", "GSM3309607", null, "source name:brain|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "NH FLI 156 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "GSM3309607", "GSM3309607: NH FLI 156 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309607", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309607", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 681376400.0, 13627528.0, "GSM3309607 r1", "0:50", "A:149742268;C:163827889;G:200725169;T:167045618;N:35456", 50, null, null, null, 149742268, 163827889, 200725169, 167045618, 35456, "SRX4477699", "SRS3602899", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.00576, null, 0.00087, null, 0.9959, null, 0.70299, null, 50, null, "T", null, "under 1.2% mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48991, "SRR7612998", "SRX4477698", "SRS3602898", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 154 ZF brain smallRNAseq", "GSM3309606", null, "source name:brain|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "NH FLI 154 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "GSM3309606", "GSM3309606: NH FLI 154 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309606", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309606", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1196666100.0, 23933322.0, "GSM3309606 r1", "0:50", "A:243243770;C:320296221;G:371488432;T:261584801;N:52876", 50, null, null, null, 243243770, 320296221, 371488432, 261584801, 52876, "SRX4477698", "SRS3602898", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01627, null, 0.00325, null, 0.99293, null, 0.7183, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48992, "SRR7612997", "SRX4477697", "SRS3602897", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 153 ZF brain smallRNAseq", "GSM3309605", null, "source name:brain|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "NH FLI 153 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "GSM3309605", "GSM3309605: NH FLI 153 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309605", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309605", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 2123002650.0, 42460053.0, "GSM3309605 r1", "0:50", "A:461619025;C:513713514;G:623358074;T:524212056;N:99981", 50, null, null, null, 461619025, 513713514, 623358074, 524212056, 99981, "SRX4477697", "SRS3602897", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02759, null, 0.00329, null, 0.99287, null, 0.62418, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48993, "SRR7612996", "SRX4477696", "SRS3602896", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 152 ZF brain smallRNAseq", "GSM3309604", null, "source name:brain|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "NH FLI 152 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "GSM3309604", "GSM3309604: NH FLI 152 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309604", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309604", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1434455750.0, 28689115.0, "GSM3309604 r1", "0:50", "A:283488481;C:381046485;G:446805516;T:323062667;N:52601", 50, null, null, null, 283488481, 381046485, 446805516, 323062667, 52601, "SRX4477696", "SRS3602896", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.04109, null, 0.00889, null, 0.98786, null, 0.73333, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48994, "SRR7612995", "SRX4477695", "SRS3602895", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 150 ZF brain smallRNAseq", "GSM3309603", null, "source name:brain|strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "NH FLI 150 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male", "GSM3309603", "GSM3309603: NH FLI 150 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309603", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309603", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1338770950.0, 26775419.0, "GSM3309603 r1", "0:50", "A:269497925;C:353627074;G:405585207;T:310020028;N:40716", 50, null, null, null, 269497925, 353627074, 405585207, 310020028, 40716, "SRX4477695", "SRS3602895", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02887, null, 0.00518, null, 0.99052, null, 0.68568, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48995, "SRR7612994", "SRX4477694", "SRS3602894", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 143 ZF brain smallRNAseq", "GSM3309602", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "NH FLI 143 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "GSM3309602", "GSM3309602: NH FLI 143 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309602", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309602", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 626017200.0, 12520344.0, "GSM3309602 r1", "0:50", "A:134906441;C:152023722;G:185947594;T:153106683;N:32760", 50, null, null, null, 134906441, 152023722, 185947594, 153106683, 32760, "SRX4477694", "SRS3602894", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.00695, null, 0.00127, null, 0.99529, null, 0.71945, null, 50, null, "T", null, "under 1.2% mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48996, "SRR7612993", "SRX4477693", "SRS3602893", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 142 ZF brain smallRNAseq", "GSM3309601", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "NH FLI 142 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "GSM3309601", "GSM3309601: NH FLI 142 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309601", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309601", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 602153350.0, 12043067.0, "GSM3309601 r1", "0:50", "A:130038217;C:144346274;G:180485776;T:147255994;N:27089", 50, null, null, null, 130038217, 144346274, 180485776, 147255994, 27089, "SRX4477693", "SRS3602893", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01383, null, 0.002, null, 0.99545, null, 0.61426, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48997, "SRR7612992", "SRX4477692", "SRS3602892", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 140 ZF brain smallRNAseq", "GSM3309600", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "NH FLI 140 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "GSM3309600", "GSM3309600: NH FLI 140 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309600", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309600", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1040923600.0, 20818472.0, "GSM3309600 r1", "0:50", "A:226013762;C:247845507;G:308453469;T:258569100;N:41762", 50, null, null, null, 226013762, 247845507, 308453469, 258569100, 41762, "SRX4477692", "SRS3602892", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01433, null, 0.00292, null, 0.99484, null, 0.60865, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48998, "SRR7612991", "SRX4477691", "SRS3602891", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 139 ZF brain smallRNAseq", "GSM3309599", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "NH FLI 139 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "GSM3309599", "GSM3309599: NH FLI 139 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309599", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309599", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 612192100.0, 12243842.0, "GSM3309599 r1", "0:50", "A:133152501;C:147001376;G:181291514;T:150727221;N:19488", 50, null, null, null, 133152501, 147001376, 181291514, 150727221, 19488, "SRX4477691", "SRS3602891", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01776, null, 0.00244, null, 0.9945, null, 0.59354, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [48999, "SRR7612990", "SRX4477690", "SRS3602890", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 138 ZF brain smallRNAseq", "GSM3309598", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "NH FLI 138 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:2 years|Sex:male", "GSM3309598", "GSM3309598: NH FLI 138 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309598", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309598", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1205010900.0, 24100218.0, "GSM3309598 r1", "0:50", "A:254443623;C:292846390;G:362958072;T:294704148;N:58667", 50, null, null, null, 254443623, 292846390, 362958072, 294704148, 58667, "SRX4477690", "SRS3602890", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02329, null, 0.00277, null, 0.99442, null, 0.57362, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49000, "SRR7612989", "SRX4477689", "SRS3602889", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 129 ZF brain smallRNAseq", "GSM3309597", null, "source name:brain|strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "NH FLI 129 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "GSM3309597", "GSM3309597: NH FLI 129 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309597", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309597", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 905166650.0, 18103333.0, "GSM3309597 r1", "0:50", "A:183798257;C:231083843;G:277164667;T:213076607;N:43276", 50, null, null, null, 183798257, 231083843, 277164667, 213076607, 43276, "SRX4477689", "SRS3602889", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.03359, null, 0.00484, null, 0.99105, null, 0.62836, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49001, "SRR7612988", "SRX4477688", "SRS3602888", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 128 ZF brain smallRNAseq", "GSM3309596", null, "source name:brain|strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "NH FLI 128 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "GSM3309596", "GSM3309596: NH FLI 128 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309596", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309596", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1304729150.0, 26094583.0, "GSM3309596 r1", "0:50", "A:261793442;C:350134689;G:395019822;T:297741148;N:40049", 50, null, null, null, 261793442, 350134689, 395019822, 297741148, 40049, "SRX4477688", "SRS3602888", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02649, null, 0.00457, null, 0.99038, null, 0.65849, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49002, "SRR7612987", "SRX4477687", "SRS3602887", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 127 ZF brain smallRNAseq", "GSM3309595", null, "source name:brain|strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "NH FLI 127 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "GSM3309595", "GSM3309595: NH FLI 127 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309595", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309595", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1087717850.0, 21754357.0, "GSM3309595 r1", "0:50", "A:233191242;C:266842531;G:322704369;T:264927170;N:52538", 50, null, null, null, 233191242, 266842531, 322704369, 264927170, 52538, "SRX4477687", "SRS3602887", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02888, null, 0.00371, null, 0.99322, null, 0.60352, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49003, "SRR7612986", "SRX4477686", "SRS3602886", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 125 ZF brain smallRNAseq", "GSM3309594", null, "source name:brain|strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "NH FLI 125 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "GSM3309594", "GSM3309594: NH FLI 125 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309594", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309594", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 745015250.0, 14900305.0, "GSM3309594 r1", "0:50", "A:160725228;C:177900490;G:219158125;T:187195853;N:35554", 50, null, null, null, 160725228, 177900490, 219158125, 187195853, 35554, "SRX4477686", "SRS3602886", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.02669, null, 0.00263, null, 0.99348, null, 0.564, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49004, "SRR7612985", "SRX4477685", "SRS3602885", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 124 ZF brain smallRNAseq", "GSM3309593", null, "source name:brain|strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "NH FLI 124 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male", "GSM3309593", "GSM3309593: NH FLI 124 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309593", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309593", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1305373550.0, 26107471.0, "GSM3309593 r1", "0:50", "A:303613747;C:302726844;G:364736102;T:334233710;N:63147", 50, null, null, null, 303613747, 302726844, 364736102, 334233710, 63147, "SRX4477685", "SRS3602885", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.03499, null, 0.00371, null, 0.99362, null, 0.5891, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49005, "SRR7612984", "SRX4477684", "SRS3602884", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 114 ZF brain smallRNAseq", "GSM3309592", null, "source name:brain|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "NH FLI 114 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "GSM3309592", "GSM3309592: NH FLI 114 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309592", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309592", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 722165700.0, 14443314.0, "GSM3309592 r1", "0:50", "A:158514262;C:171787722;G:214687494;T:177143548;N:32674", 50, null, null, null, 158514262, 171787722, 214687494, 177143548, 32674, "SRX4477684", "SRS3602884", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01251, null, 0.00195, null, 0.99584, null, 0.60892, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49006, "SRR7612983", "SRX4477683", "SRS3602883", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 109 ZF brain smallRNAseq", "GSM3309591", null, "source name:brain|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "NH FLI 109 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "GSM3309591", "GSM3309591: NH FLI 109 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309591", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309591", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1295539450.0, 25910789.0, "GSM3309591 r1", "0:50", "A:292712777;C:309650541;G:373811139;T:319271810;N:93183", 50, null, null, null, 292712777, 309650541, 373811139, 319271810, 93183, "SRX4477683", "SRS3602883", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.07779, null, 0.00531, null, 0.99431, null, 0.5455, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49007, "SRR7612982", "SRX4477682", "SRS3602882", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 99 100 ZF brain smallRNAseq", "GSM3309590", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "NH FLI 99 100 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "GSM3309590", "GSM3309590: NH FLI 99 100 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309590", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309590", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 433373950.0, 8667479.0, "GSM3309590 r1", "0:50", "A:93001141;C:105441767;G:129717150;T:105194380;N:19512", 50, null, null, null, 93001141, 105441767, 129717150, 105194380, 19512, "SRX4477682", "SRS3602882", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01476, null, 0.0021, null, 0.99555, null, 0.64442, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49008, "SRR7612981", "SRX4477681", "SRS3602881", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 97 98 ZF brain smallRNAseq", "GSM3309589", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "NH FLI 97 98 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "GSM3309589", "GSM3309589: NH FLI 97 98 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309589", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309589", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 510617150.0, 10212343.0, "GSM3309589 r1", "0:50", "A:110447838;C:121736402;G:152183388;T:126228958;N:20564", 50, null, null, null, 110447838, 121736402, 152183388, 126228958, 20564, "SRX4477681", "SRS3602881", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01519, null, 0.00277, null, 0.99409, null, 0.63157, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49009, "SRR7612980", "SRX4477680", "SRS3602880", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 95 96 ZF brain smallRNAseq", "GSM3309588", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "NH FLI 95 96 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "GSM3309588", "GSM3309588: NH FLI 95 96 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309588", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309588", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 472516100.0, 9450322.0, "GSM3309588 r1", "0:50", "A:103765011;C:113400404;G:139267589;T:116067916;N:15180", 50, null, null, null, 103765011, 113400404, 139267589, 116067916, 15180, "SRX4477680", "SRS3602880", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01894, null, 0.00292, null, 0.99411, null, 0.58808, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49010, "SRR7612979", "SRX4477679", "SRS3602879", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 116 ZF brain smallRNAseq", "GSM3309587", null, "source name:brain|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "NH FLI 116 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "GSM3309587", "GSM3309587: NH FLI 116 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309587", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309587", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 715226800.0, 14304536.0, "GSM3309587 r1", "0:50", "A:159838696;C:168777427;G:208871390;T:177701320;N:37967", 50, null, null, null, 159838696, 168777427, 208871390, 177701320, 37967, "SRX4477679", "SRS3602879", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.00535, null, 0.00095, null, 0.99677, null, 0.70896, null, 50, null, "T", null, "under 1.2% mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49011, "SRR7612978", "SRX4477678", "SRS3602878", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 112 ZF brain smallRNAseq", "GSM3309586", null, "source name:brain|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "NH FLI 112 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "GSM3309586", "GSM3309586: NH FLI 112 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309586", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309586", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1026870700.0, 20537414.0, "GSM3309586 r1", "0:50", "A:221725135;C:249408204;G:304663061;T:251034143;N:40157", 50, null, null, null, 221725135, 249408204, 304663061, 251034143, 40157, "SRX4477678", "SRS3602878", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01708, null, 0.00331, null, 0.99354, null, 0.66357, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49012, "SRR7612977", "SRX4477677", "SRS3602877", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 111 ZF brain smallRNAseq", "GSM3309585", null, "source name:brain|strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "NH FLI 111 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male", "GSM3309585", "GSM3309585: NH FLI 111 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309585", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309585", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 743568750.0, 14871375.0, "GSM3309585 r1", "0:50", "A:166161134;C:175989827;G:216120925;T:185273082;N:23782", 50, null, null, null, 166161134, 175989827, 216120925, 185273082, 23782, "SRX4477677", "SRS3602877", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01548, null, 0.00239, null, 0.99515, null, 0.60786, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49013, "SRR7612976", "SRX4477676", "SRS3602906", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 103 104 ZF brain smallRNAseq", "GSM3309584", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "NH FLI 103 104 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "GSM3309584", "GSM3309584: NH FLI 103 104 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309584", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309584", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 1106423150.0, 22128463.0, "GSM3309584 r1", "0:50", "A:234017026;C:276221869;G:334967256;T:261138362;N:78637", 50, null, null, null, 234017026, 276221869, 334967256, 261138362, 78637, "SRX4477676", "SRS3602906", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.07804, null, 0.00455, null, 0.99263, null, 0.55094, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"], [49014, "SRR7612975", "SRX4477675", "SRS3602876", "SRP155545", "PRJNA483217", "Sequencing of Danio rerio brain for 5 age groups", "GSE117807", "Transcriptome Analysis", "Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6  12  24  36 month and 42 month.    Jena Centre for Systems Biology of Ageing   JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples  12 month 5 samples  24 month 5 samples  36 month 5 samples  42 month 5 samples.", null, null, null, "NH FLI 101 102 ZF brain smallRNAseq", "GSM3309583", null, "source name:brain|strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "NH FLI 101 102 ZF brain smallRNAseq", "Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter:  n 0  o 0  e 0  l 8  k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.", "brain", null, "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", null, "strain:AB JxT\\xFC|tissue:brain|age:6 month|Sex:male", "GSM3309583", "GSM3309583: NH FLI 101 102 ZF brain smallRNAseq; Danio rerio; ncRNA Seq", "GSM3309583", null, "1", "Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.", "GEO Accession:GSM3309583", "ncRNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP155545", null, null, null, null, 929857100.0, 18597142.0, "GSM3309583 r1", "0:50", "A:195349293;C:237069996;G:279453097;T:217936195;N:48519", 50, null, null, null, 195349293, 237069996, 279453097, 217936195, 48519, "SRX4477675", "SRS3602876", "SRA745937", "GEO", "Leibniz Institute for Age Research - Fritz Lipmann Institute", 1, 0.01233, null, 0.00233, null, 0.99417, null, 0.76993, null, 50, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "size_fractionation", "trueseq", "bulk", "unknown", "unknown", null, "Germany", "2018-07-27", "Adult", "Adult", "Brain", "Nervous System"]], "truncated": false, "filtered_table_rows_count": 25, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_layout\" = :p0 and \"experiment.library_strategy\" = :p1 and \"tissue_curation_coarse\" = :p2 order by rowid limit 101", "params": {"p0": "SINGLE", "p1": "ncRNA-Seq", "p2": "Nervous System"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "ncRNA-Seq", "label": "ncRNA-Seq", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&tissue_curation_coarse=Nervous+System", "selected": true}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "size fractionation", "label": "size fractionation", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System&experiment.library_selection=size+fractionation", "selected": false}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "SINGLE", "label": "SINGLE", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "selected": true}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System&experiment.platform=ILLUMINA", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "Adult", "label": "Adult", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System&devstage_curation_coarse=Adult", 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"http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq", "selected": true}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "Brain", "label": "Brain", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System&tissue_curation=Brain", "selected": false}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System", "results": [{"value": "unknown", "label": "unknown", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_strategy=ncRNA-Seq&tissue_curation_coarse=Nervous+System&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 125.9884930041153}