{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"SINGLE\", experiment.library_selection = \"other\" and tissue_curation = \"Gut\"", "rows": [[62981, "SRR13559185", "SRX9957470", "SRS8131854", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "100% feeding group replicate 2", "CR 100perc 2", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:100% feeding|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 100% feeding", "CR 100perc 2", "CR 100perc 2", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_100perc_2_S10_R1_001.fastq.gz", "fastq", 1797322363.0, 23790604.0, "CR 100perc 2 S10 R1 001.fastq.gz", "0:75.55 1:0", "A:430558741;C:468161000;G:471226375;T:427297574;N:78673", 75, 0, null, null, 430558741, 468161000, 471226375, 427297574, 78673, "SRX9957470", "SRS8131854", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.65722, null, 0.19871, null, 0.82339, null, 0.66254, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62982, "SRR13559186", "SRX9957469", "SRS8131853", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "100% feeding group replicate 1", "CR 100perc 1", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:100% feeding|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 100% feeding", "CR 100perc 1", "CR 100perc 1", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_100perc_1_S9_R1_001.fastq.gz", "fastq", 1534720214.0, 20317497.0, "CR 100perc 1 S9 R1 001.fastq.gz", "0:75.54 1:0", "A:375776426;C:394418295;G:367506580;T:396953400;N:65513", 75, 0, null, null, 375776426, 394418295, 367506580, 396953400, 65513, "SRX9957469", "SRS8131853", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.84461, null, 0.26652, null, 0.76717, null, 0.62282, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62983, "SRR13559187", "SRX9957468", "SRS8131852", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "85% feeding group replicate 4", "CR 85perc 4", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:85% feeding|replicate:biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 85% feeding", "CR 85perc 4", "CR 85perc 4", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_85perc_4_S8_R1_001.fastq.gz", "fastq", 1916818437.0, 25373905.0, "CR 85perc 4 S8 R1 001.fastq.gz", "0:75.54 1:0", "A:488054788;C:475184415;G:443451608;T:510046224;N:81402", 75, 0, null, null, 488054788, 475184415, 443451608, 510046224, 81402, "SRX9957468", "SRS8131852", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.92737, null, 0.2783, null, 0.75909, null, 0.57435, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62984, "SRR13559188", "SRX9957467", "SRS8131851", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "85% feeding group replicate 3", "CR 85perc 3", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:85% feeding|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 85% feeding", "CR 85perc 3", "CR 85perc 3", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_85perc_3_S7_R1_001.fastq.gz", "fastq", 1843871333.0, 24411281.0, "CR 85perc 3 S7 R1 001.fastq.gz", "0:75.53 1:0", "A:441643488;C:487987766;G:446957305;T:467206076;N:76698", 75, 0, null, null, 441643488, 487987766, 446957305, 467206076, 76698, "SRX9957467", "SRS8131851", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.91984, null, 0.25275, null, 0.77565, null, 0.65163, null, 74, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62985, "SRR13559189", "SRX9957466", "SRS8131850", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "85% feeding group replicate 2", "CR 85perc 2", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:85% feeding|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 85% feeding", "CR 85perc 2", "CR 85perc 2", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_85perc_2_S6_R1_001.fastq.gz", "fastq", 2063663358.0, 27321356.0, "CR 85perc 2 S6 R1 001.fastq.gz", "0:75.53 1:0", "A:495156958;C:545615457;G:490454848;T:532349272;N:86823", 75, 0, null, null, 495156958, 545615457, 490454848, 532349272, 86823, "SRX9957466", "SRS8131850", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.92542, null, 0.29093, null, 0.77743, null, 0.62803, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62986, "SRR13559190", "SRX9957465", "SRS8131849", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "85% feeding group replicate 1", "CR 85perc 1", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:85% feeding|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 85% feeding", "CR 85perc 1", "CR 85perc 1", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_85perc_1_S5_R1_001.fastq.gz", "fastq", 1987823280.0, 26313964.0, "CR 85perc 1 S5 R1 001.fastq.gz", "0:75.54 1:0", "A:489253658;C:511031006;G:469881720;T:517571925;N:84971", 75, 0, null, null, 489253658, 511031006, 469881720, 517571925, 84971, "SRX9957465", "SRS8131849", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.91539, null, 0.26469, null, 0.75154, null, 0.62387, null, 73, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62987, "SRR13559191", "SRX9957464", "SRS8131848", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "70% feeding group replicate 4", "CR 70perc 4", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:70% feeding|replicate:biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 70% feeding", "CR 70perc 4", "CR 70perc 4", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_70perc_4_S4_R1_001.fastq.gz", "fastq", 1692306421.0, 22402714.0, "CR 70perc 4 S4 R1 001.fastq.gz", "0:75.54 1:0", "A:416831282;C:431623148;G:400872189;T:442907940;N:71862", 75, 0, null, null, 416831282, 431623148, 400872189, 442907940, 71862, "SRX9957464", "SRS8131848", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.91284, null, 0.27717, null, 0.75702, null, 0.58936, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62988, "SRR13559192", "SRX9957463", "SRS8131847", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "70% feeding group replicate 3", "CR 70perc 3", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:70% feeding|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 70% feeding", "CR 70perc 3", "CR 70perc 3", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_70perc_3_S3_R1_001.fastq.gz", "fastq", 1743481023.0, 23079781.0, "CR 70perc 3 S3 R1 001.fastq.gz", "0:75.54 1:0", "A:440529322;C:430386534;G:405191664;T:467297560;N:75943", 75, 0, null, null, 440529322, 430386534, 405191664, 467297560, 75943, "SRX9957463", "SRS8131847", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.92679, null, 0.30032, null, 0.7446, null, 0.60383, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62989, "SRR13559193", "SRX9957462", "SRS8131846", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "100% feeding group replicate 4", "CR 100perc 4", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:100% feeding|replicate:biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 100% feeding", "CR 100perc 4", "CR 100perc 4", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_100perc_4_S12_R1_001.fastq.gz", "fastq", 2065187112.0, 27339493.0, "CR 100perc 4 S12 R1 001.fastq.gz", "0:75.54 1:0", "A:518989032;C:519066920;G:484077687;T:542966004;N:87469", 75, 0, null, null, 518989032, 519066920, 484077687, 542966004, 87469, "SRX9957462", "SRS8131846", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.92848, null, 0.28327, null, 0.75371, null, 0.58973, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62990, "SRR13559194", "SRX9957461", "SRS8131845", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "100% feeding group replicate 3", "CR 100perc 3", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:100% feeding|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 100% feeding", "CR 100perc 3", "CR 100perc 3", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_100perc_3_S11_R1_001.fastq.gz", "fastq", 2335163022.0, 30913920.0, "CR 100perc 3 S11 R1 001.fastq.gz", "0:75.54 1:0", "A:569133042;C:607012551;G:552359956;T:606558343;N:99130", 75, 0, null, null, 569133042, 607012551, 552359956, 606558343, 99130, "SRX9957461", "SRS8131845", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.92688, null, 0.27391, null, 0.75732, null, 0.64476, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62991, "SRR13559195", "SRX9957460", "SRS8131844", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "70% feeding group replicate 2", "CR 70perc 2", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:70% feeding|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 70% feeding", "CR 70perc 2", "CR 70perc 2", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_70perc_2_S2_R1_001.fastq.gz", "fastq", 1994514321.0, 26408108.0, "CR 70perc 2 S2 R1 001.fastq.gz", "0:75.53 1:0", "A:466027349;C:539707204;G:492197318;T:496496054;N:86396", 75, 0, null, null, 466027349, 539707204, 492197318, 496496054, 86396, "SRX9957460", "SRS8131844", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.94608, null, 0.26334, null, 0.78084, null, 0.65761, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"], [62992, "SRR13559196", "SRX9957459", "SRS8131843", "SRP303451", "PRJNA695140", "Zebrafish caloric restriction", "PRJNA695140", "Other", "Using Zebrafish Danio rerio as a model organism for aquaculture  we investigated the impact of caloric restriction CR on growth  gut morphology and gene expression.", null, null, null, "70% feeding group replicate 1", "CR 70perc 1", null, "strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:70% feeding|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: 70% feeding", "CR 70perc 1", "CR 70perc 1", "Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP303451", null, null, "CR_70perc_1_S1_R1_001.fastq.gz", "fastq", 1514616148.0, 20051359.0, "CR 70perc 1 S1 R1 001.fastq.gz", "0:75.54 1:0", "A:361412841;C:396741800;G:366909734;T:389486382;N:65391", 75, 0, null, null, 361412841, 396741800, 366909734, 389486382, 65391, "SRX9957459", "SRS8131843", "SRA1188331", "Temasek Life Sciences Laboratory|Reproductive Genomics Group", "Temasek Life Sciences Laboratory", 1, 0.91894, null, 0.27365, null, 0.75941, null, 0.62958, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "rrna_depletion", "ribozero", "bulk", "unknown", "unknown", null, "Singapore", "2021-01-27", "Adult", "Adult", "Gut", "Digestive System"]], "truncated": false, "filtered_table_rows_count": 12, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_layout\" = :p0 and \"experiment.library_selection\" = :p1 and \"tissue_curation\" = :p2 order by rowid limit 101", "params": {"p0": "SINGLE", "p1": "other", "p2": "Gut"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "other", "label": "other", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&tissue_curation=Gut", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "SINGLE", "label": "SINGLE", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=other&tissue_curation=Gut", "selected": true}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&experiment.platform=ILLUMINA", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "Adult", "label": "Adult", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&devstage_curation_coarse=Adult", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "Adult", "label": "Adult", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&devstage_curation=Adult", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "Digestive System", "label": "Digestive System", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&tissue_curation_coarse=Digestive+System", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "Gut", "label": "Gut", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other", "selected": true}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut", "results": [{"value": "unknown", "label": "unknown", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=other&tissue_curation=Gut&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 89.81802201014943}