{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"SINGLE\", experiment.library_selection = \"RANDOM PCR\" and experiment.platform = \"BGISEQ\"", "rows": [[60445, "SRR12272862", "SRX8777892", "SRS7048444", "SRP272672", "PRJNA647444", "mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA", "PRJNA647444", "Other", "Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.", null, null, null, "C2", "C2 C2 2 4", null, "replicate:biological replicate 2|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc 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0.83904, null, 0.0823, null, 0.84741, null, 0.49929, null, 22, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-08-05", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [71549, "SRR21700247", "SRX17697774", "SRS15228561", "SRP399479", "PRJNA884084", "RNA Seq data of gmfg morphants and their control siblings", "PRJNA884084", "Other", "To more specifically explore the underlying mechanism by which gmfg regulates HSPC initiation  we performed RNA sequencing RNA Seq with the dissected trunk and tail from 26 hpf gmfg morphants and their control siblings.", null, null, null, "biological replicate 3", "gmfg atgMO 3", null, "strain:not applicable|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:the dissected trunk and tail|collection date:2021 02 26|geo loc name:China:Shenzhen Guangdong|sample type:mo3|BioSampleModel:Model organism or animal", null, null, 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"SRX17697773", "SRS15228560", "SRP399479", "PRJNA884084", "RNA Seq data of gmfg morphants and their control siblings", "PRJNA884084", "Other", "To more specifically explore the underlying mechanism by which gmfg regulates HSPC initiation  we performed RNA sequencing RNA Seq with the dissected trunk and tail from 26 hpf gmfg morphants and their control siblings.", null, null, null, "biological replicate 2", "gmfg atgMO 2", null, "strain:not applicable|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:the dissected trunk and tail|collection date:2021 02 26|geo loc name:China:Shenzhen Guangdong|sample type:mo2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of Danio rerio", "MO2 20210213", "MO2 20210213", "RNA seq of Danio rerio in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP399479", null, null, "MO_2_1.fq.gz", "fastq", 1193697300.0, 23873946.0, 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Seq with the dissected trunk and tail from 26 hpf gmfg morphants and their control siblings.", null, null, null, "biological replicate 1", "ctl 1", null, "strain:not applicable|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:the dissected trunk and tail|collection date:2021 02 26|geo loc name:China:Shenzhen Guangdong|sample type:ctl1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of Danio rerio", "ctl1 20210209", "ctl1 20210209", "RNA seq of Danio rerio in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP399479", null, null, "ctl_1_1.fq.gz", "fastq", 1194196300.0, 23883926.0, "ctl 1 1.fq.gz", "0:50 1:0", "A:315050496;C:273915045;G:282252071;T:322978688;N:0", 50, 0, null, null, 315050496, 273915045, 282252071, 322978688, 0, "SRX17697769", "SRS15228556", "SRA1506658", "the First Affiliated Hospital, School of Medicine, Zhejiang 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"GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_layout\" = :p0 and \"experiment.library_selection\" = :p1 and \"experiment.platform\" = :p2 order by rowid limit 101", "params": {"p0": "SINGLE", "p1": "RANDOM PCR", "p2": "BGISEQ"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&experiment.library_strategy=RNA-Seq", "selected": false}, {"value": "miRNA-Seq", "label": "miRNA-Seq", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&experiment.library_strategy=miRNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "RANDOM PCR", "label": "RANDOM PCR", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.platform=BGISEQ", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "SINGLE", "label": "SINGLE", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "selected": true}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "BGISEQ", "label": "BGISEQ", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR", "selected": true}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "Embryo", "label": "Embryo", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&devstage_curation_coarse=Embryo", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "Pharyngula", "label": "Pharyngula", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&devstage_curation=Pharyngula", "selected": false}, {"value": "Undetermined", "label": "Undetermined", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&devstage_curation=Undetermined", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "All anatomical structures", "label": "All anatomical structures", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&tissue_curation_coarse=All+anatomical+structures", "selected": false}, {"value": "Multi-system", "label": "Multi-system", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&tissue_curation_coarse=Multi-system", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "Multi-tissue", "label": "Multi-tissue", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&tissue_curation=Multi-tissue", "selected": false}, {"value": "Whole Organism", "label": "Whole Organism", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&tissue_curation=Whole+Organism", "selected": false}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ", "results": [{"value": "unknown", "label": "unknown", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=SINGLE&experiment.library_selection=RANDOM+PCR&experiment.platform=BGISEQ&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 94.37739600252826}