{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"SINGLE\", experiment.library_selection = \"RANDOM\" and tissue_curation = \"Eye\"", "rows": [[19087, "ERR13834862", "ERX13237628", "ERS21098715", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48HC1 S20 R1 001.fastq.gz", "SAMEA116100635", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:48 HC1|collected by:Jaakko Lehtimaki|collection date:2021 11 24|common name:zebrafish|dev stage:48 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:48 HC1|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 48 HC1", "webin reads 48 HC1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 HC1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48HC1_S20_R1_001.fastq.gz", "fastq", 3768442091.0, 38065677.0, "webin reads 48 HC1", "0:99.00", "A:1055463738;C:792073627;G:817607736;T:1103223790;N:73200", 99, null, null, null, 1055463738, 792073627, 817607736, 1103223790, 73200, "ERX13237628", "ERS21098715", "ERA30883416", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19088, "ERR13834951", "ERX13237717", "ERS21098721", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58PR3 S26 R1 001.fastq.gz", "58 PR3", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 PR3", "webin reads 58 PR3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 PR3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58PR3_S26_R1_001.fastq.gz", "fastq", 3869469736.0, 38850717.0, "webin reads 58 PR3", "0:99.60", "A:1103909449;C:804146524;G:827344036;T:1134036010;N:33717", 99, null, null, null, 1103909449, 804146524, 827344036, 1134036010, 33717, "ERX13237717", "ERS21098721", "ERA30883529", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19089, "ERR13835010", "ERX13237776", "ERS21098726", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58AC4 S31 R1 001.fastq.gz", "SAMEA116100646", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:58 AC4|collected by:Jaakko Lehtimaki|collection date:2021 12 02|common name:zebrafish|dev stage:58 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:58 AC4|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 58 AC4", "webin reads 58 AC4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 AC4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58AC4_S31_R1_001.fastq.gz", "fastq", 3607648651.0, 36331933.0, "webin reads 58 AC4", "0:99.30", "A:1038047870;C:736262498;G:759315202;T:1073962987;N:60094", 99, null, null, null, 1038047870, 736262498, 759315202, 1073962987, 60094, "ERX13237776", "ERS21098726", "ERA30883721", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19090, "ERR13822794", "ERX13225546", "ERS21098708", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48PR2 S13 R1 001.fastq.gz", "48 PR2", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 PR2", "webin reads 48 PR2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 PR2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48PR2_S13_R1_001.fastq.gz", "fastq", 3809299607.0, 38404185.0, "webin reads 48 PR2", "0:99.19", "A:1067728192;C:802585802;G:828435932;T:1110435904;N:113777", 99, null, null, null, 1067728192, 802585802, 828435932, 1110435904, 113777, "ERX13225546", "ERS21098708", "ERA30879682", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19091, "ERR13834854", "ERX13237620", "ERS21098714", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48AC4 S19 R1 001.fastq.gz", "48 AC4", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 AC4", "webin reads 48 AC4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 AC4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48AC4_S19_R1_001.fastq.gz", "fastq", 3410801894.0, 34443068.0, "webin reads 48 AC4", "0:99.03", "A:966160063;C:707754156;G:733039262;T:1003772756;N:75657", 99, null, null, null, 966160063, 707754156, 733039262, 1003772756, 75657, "ERX13237620", "ERS21098714", "ERA30883390", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19092, "ERR13828824", "ERX13231590", "ERS21098710", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48PR4 S15 R1 001.fastq.gz", "48 PR4", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 PR4", "webin reads 48 PR4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 PR4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48PR4_S15_R1_001.fastq.gz", "fastq", 4365943927.0, 44278278.0, "webin reads 48 PR4", "0:98.60", "A:1214448497;C:927512154;G:957491418;T:1266385355;N:106503", 98, null, null, null, 1214448497, 927512154, 957491418, 1266385355, 106503, "ERX13231590", "ERS21098710", "ERA30883309", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19093, "ERR13834993", "ERX13237759", "ERS21098723", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58AC1 S28 R1 001.fastq.gz", "58 AC1", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 AC1", "webin reads 58 AC1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 AC1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58AC1_S28_R1_001.fastq.gz", "fastq", 3710768269.0, 37364763.0, "webin reads 58 AC1", "0:99.31", "A:1060419097;C:761984557;G:786533722;T:1101603428;N:227465", 99, null, null, null, 1060419097, 761984557, 786533722, 1101603428, 227465, "ERX13237759", "ERS21098723", "ERA30883659", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19094, "ERR13834875", "ERX13237641", "ERS21098717", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48HC3 S22 R1 001.fastq.gz", "48 HC3", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 HC3", "webin reads 48 HC3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 HC3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48HC3_S22_R1_001.fastq.gz", "fastq", 3083078586.0, 31073491.0, "webin reads 48 HC3", "0:99.22", "A:856250957;C:655140994;G:677078911;T:894558582;N:49142", 99, null, null, null, 856250957, 655140994, 677078911, 894558582, 49142, "ERX13237641", "ERS21098717", "ERA30883447", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19095, "ERR13834899", "ERX13237665", "ERS21098720", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58PR2 S25 R1 001.fastq.gz", "58 PR2", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 PR2", "webin reads 58 PR2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 PR2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58PR2_S25_R1_001.fastq.gz", "fastq", 3849571818.0, 38706841.0, "webin reads 58 PR2", "0:99.45", "A:1089593011;C:803322469;G:827777017;T:1128836774;N:42547", 99, null, null, null, 1089593011, 803322469, 827777017, 1128836774, 42547, "ERX13237665", "ERS21098720", "ERA30883518", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19096, "ERR13834889", "ERX13237655", "ERS21098719", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. 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Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58PR1 S24 R1 001.fastq.gz", "58 PR1", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 PR1", "webin reads 58 PR1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 PR1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58PR1_S24_R1_001.fastq.gz", "fastq", 3945671240.0, 39514922.0, "webin reads 58 PR1", "0:99.85", "A:1135075173;C:807489123;G:827964380;T:1175109762;N:32802", 99, null, null, null, 1135075173, 807489123, 827964380, 1175109762, 32802, "ERX13237655", "ERS21098719", "ERA30883497", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19097, "ERR13835019", "ERX13237785", "ERS21098728", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58HC2 S33 R1 001.fastq.gz", "SAMEA116100648", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:58 HC2|collected by:Jaakko Lehtimaki|collection date:2021 12 02|common name:zebrafish|dev stage:58 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:58 HC2|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 58 HC2", "webin reads 58 HC2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 HC2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58HC2_S33_R1_001.fastq.gz", "fastq", 3711237069.0, 37217240.0, "webin reads 58 HC2", "0:99.72", "A:1070592288;C:757099665;G:780689044;T:1102575310;N:280762", 99, null, null, null, 1070592288, 757099665, 780689044, 1102575310, 280762, "ERX13237785", "ERS21098728", "ERA30883748", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19098, "ERR13822110", "ERX13224862", "ERS21098697", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38PR2 S2 R1 001.fastq.gz", "38 PR2", null, "organism:Danio rerio|collection date:2021 11 30|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 PR2", "webin reads 38 PR2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 PR2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38PR2_S2_R1_001.fastq.gz", "fastq", 3463281109.0, 34821985.0, "webin reads 38 PR2", "0:99.46", "A:969862466;C:733798241;G:755135957;T:1004440555;N:43890", 99, null, null, null, 969862466, 733798241, 755135957, 1004440555, 43890, "ERX13224862", "ERS21098697", "ERA30879238", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19099, "ERR13822784", "ERX13225536", "ERS21098706", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38HC3 S11 R1 001.fastq.gz", "38 HC3", null, "organism:Danio rerio|collection date:2021 12 07|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 HC3", "webin reads 38 HC3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 HC3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38HC3_S11_R1_001.fastq.gz", "fastq", 4360921873.0, 44107486.0, "webin reads 38 HC3", "0:98.87", "A:1222778761;C:918257887;G:948838973;T:1270939370;N:106882", 98, null, null, null, 1222778761, 918257887, 948838973, 1270939370, 106882, "ERX13225536", "ERS21098706", "ERA30879613", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19100, "ERR13828836", "ERX13231602", "ERS21098712", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48AC2 S17 R1 001.fastq.gz", "48 AC2", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 AC2", "webin reads 48 AC2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 AC2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48AC2_S17_R1_001.fastq.gz", "fastq", 3205206588.0, 32424632.0, "webin reads 48 AC2", "0:98.85", "A:902438127;C:672433401;G:694813369;T:935445436;N:76255", 98, null, null, null, 902438127, 672433401, 694813369, 935445436, 76255, "ERX13231602", "ERS21098712", "ERA30883343", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19101, "ERR13835004", "ERX13237770", "ERS21098725", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58AC3 S30 R1 001.fastq.gz", "58 AC3", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 AC3", "webin reads 58 AC3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 AC3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58AC3_S30_R1_001.fastq.gz", "fastq", 3782993133.0, 38295959.0, "webin reads 58 AC3", "0:98.78", "A:1080745150;C:779903026;G:803258485;T:1118994941;N:91531", 98, null, null, null, 1080745150, 779903026, 803258485, 1118994941, 91531, "ERX13237770", "ERS21098725", "ERA30883697", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19102, "ERR13834868", "ERX13237634", "ERS21098716", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48HC2 S21 R1 001.fastq.gz", "SAMEA116100636", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:48 HC2|collected by:Jaakko Lehtimaki|collection date:2021 11 24|common name:zebrafish|dev stage:48 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:48 HC2|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 48 HC2", "webin reads 48 HC2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 HC2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48HC2_S21_R1_001.fastq.gz", "fastq", 3424347865.0, 34510204.0, "webin reads 48 HC2", "0:99.23", "A:959488173;C:721171249;G:745705870;T:997922014;N:60559", 99, null, null, null, 959488173, 721171249, 745705870, 997922014, 60559, "ERX13237634", "ERS21098716", "ERA30883434", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19103, "ERR13822197", "ERX13224949", "ERS21098704", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38HC1 S9 R1 001.fastq.gz", "SAMEA116100624", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:38 HC1|collected by:Jaakko Lehtimaki|collection date:2021 11 30|common name:zebrafish|dev stage:38 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:38 HC1|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 38 HC1", "webin reads 38 HC1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 HC1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38HC1_S9_R1_001.fastq.gz", "fastq", 3784641498.0, 38331162.0, "webin reads 38 HC1", "0:98.74", "A:1064199311;C:791310791;G:818910597;T:1110118632;N:102167", 98, null, null, null, 1064199311, 791310791, 818910597, 1110118632, 102167, "ERX13224949", "ERS21098704", "ERA30879548", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19104, "ERR13834880", "ERX13237646", "ERS21098718", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48HC4 S23 R1 001.fastq.gz", "48 HC4", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 HC4", "webin reads 48 HC4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 HC4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48HC4_S23_R1_001.fastq.gz", "fastq", 3660674315.0, 36821474.0, "webin reads 48 HC4", "0:99.42", "A:1035049987;C:763030378;G:788062167;T:1074303516;N:228267", 99, null, null, null, 1035049987, 763030378, 788062167, 1074303516, 228267, "ERX13237646", "ERS21098718", "ERA30883470", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19105, "ERR13822867", "ERX13225633", "ERS21098709", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48PR3 S14 R1 001.fastq.gz", "48 PR3", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 PR3", "webin reads 48 PR3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 PR3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48PR3_S14_R1_001.fastq.gz", "fastq", 4232170464.0, 42534853.0, "webin reads 48 PR3", "0:99.50", "A:1195251409;C:889346003;G:917240118;T:1230272855;N:60079", 99, null, null, null, 1195251409, 889346003, 917240118, 1230272855, 60079, "ERX13225633", "ERS21098709", "ERA30879704", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19106, "ERR13822131", "ERX13224883", "ERS21098700", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38AC1 S5 R1 001.fastq.gz", "SAMEA116100620", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:38 AC1|collected by:Jaakko Lehtimaki|collection date:2021 11 30|common name:zebrafish|dev stage:38 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:38 AC1|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 38 AC1", "webin reads 38 AC1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 AC1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38AC1_S5_R1_001.fastq.gz", "fastq", 3836921113.0, 38702139.0, "webin reads 38 AC1", "0:99.14", "A:1066720805;C:818958589;G:843762182;T:1107403844;N:75693", 99, null, null, null, 1066720805, 818958589, 843762182, 1107403844, 75693, "ERX13224883", "ERS21098700", "ERA30879356", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19107, "ERR13822143", "ERX13224895", "ERS21098702", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38AC3 S7 R1 001.fastq.gz", "38 AC3", null, "organism:Danio rerio|collection date:2021 12 07|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 AC3", "webin reads 38 AC3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 AC3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38AC3_S7_R1_001.fastq.gz", "fastq", 3452707377.0, 34902410.0, "webin reads 38 AC3", "0:98.92", "A:970868997;C:726795179;G:750560378;T:1004408693;N:74130", 98, null, null, null, 970868997, 726795179, 750560378, 1004408693, 74130, "ERX13224895", "ERS21098702", "ERA30879451", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19108, "ERR13828843", "ERX13234350", "ERS21098713", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48AC3 S18 R1 001.fastq.gz", "48 AC3", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 AC3", "webin reads 48 AC3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 AC3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48AC3_S18_R1_001.fastq.gz", "fastq", 3733628911.0, 37779462.0, "webin reads 48 AC3", "0:98.83", "A:1047204450;C:786943605;G:812327274;T:1086893109;N:260473", 98, null, null, null, 1047204450, 786943605, 812327274, 1086893109, 260473, "ERX13234350", "ERS21098713", "ERA30883366", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19109, "ERR13822153", "ERX13224905", "ERS21098703", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38AC4 S8 R1 001.fastq.gz", "38 AC4", null, "organism:Danio rerio|collection date:2021 12 07|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 AC4", "webin reads 38 AC4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 AC4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38AC4_S8_R1_001.fastq.gz", "fastq", 4130629624.0, 41794865.0, "webin reads 38 AC4", "0:98.83", "A:1156746387;C:877063962;G:905379690;T:1191264308;N:175277", 98, null, null, null, 1156746387, 877063962, 905379690, 1191264308, 175277, "ERX13224905", "ERS21098703", "ERA30879532", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19110, "ERR13822201", "ERX13224953", "ERS21098705", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38HC2 S10 R1 001.fastq.gz", "38 HC2", null, "organism:Danio rerio|collection date:2021 11 30|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 HC2", "webin reads 38 HC2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 HC2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38HC2_S10_R1_001.fastq.gz", "fastq", 4221340137.0, 42584743.0, "webin reads 38 HC2", "0:99.13", "A:1195817135;C:879958039;G:908085464;T:1237394738;N:84761", 99, null, null, null, 1195817135, 879958039, 908085464, 1237394738, 84761, "ERX13224953", "ERS21098705", "ERA30879582", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19111, "ERR13822114", "ERX13224866", "ERS21098698", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38PR3 S3 R1 001.fastq.gz", "SAMEA116100618", "GIMM", "ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:38 PR3|collected by:Jaakko Lehtimaki|collection date:2021 12 07|common name:zebrafish|dev stage:38 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:38 PR3|scientific name:Danio rerio|tissue type:retina", null, null, null, null, null, null, null, null, "Raw reads: 38 PR3", "webin reads 38 PR3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 PR3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38PR3_S3_R1_001.fastq.gz", "fastq", 3894010106.0, 39196855.0, "webin reads 38 PR3", "0:99.34", "A:1093221995;C:818047738;G:843661747;T:1138957138;N:121488", 99, null, null, null, 1093221995, 818047738, 843661747, 1138957138, 121488, "ERX13224866", "ERS21098698", "ERA30879273", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2024-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19112, "ERR13822135", "ERX13224887", "ERS21098701", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38AC2 S6 R1 001.fastq.gz", "38 AC2", null, "organism:Danio rerio|collection date:2021 11 30|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 AC2", "webin reads 38 AC2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 AC2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38AC2_S6_R1_001.fastq.gz", "fastq", 3913343007.0, 39682834.0, "webin reads 38 AC2", "0:98.62", "A:1089960083;C:827936673;G:855955684;T:1139372607;N:117960", 98, null, null, null, 1089960083, 827936673, 855955684, 1139372607, 117960, "ERX13224887", "ERS21098701", "ERA30879382", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19113, "ERR13835032", "ERX13237798", "ERS21098730", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58HC4 S35 R1 001.fastq.gz", "58 HC4", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 HC4", "webin reads 58 HC4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 HC4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58HC4_S35_R1_001.fastq.gz", "fastq", 4418556015.0, 44331835.0, "webin reads 58 HC4", "0:99.67", "A:1255080581;C:916490847;G:946212615;T:1300735054;N:36918", 99, null, null, null, 1255080581, 916490847, 946212615, 1300735054, 36918, "ERX13237798", "ERS21098730", "ERA30883773", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19114, "ERR13828829", "ERX13231595", "ERS21098711", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "48AC1 S16 R1 001.fastq.gz", "48 AC1", null, "organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 48 AC1", "webin reads 48 AC1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 48 AC1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "48AC1_S16_R1_001.fastq.gz", "fastq", 3933669121.0, 39695406.0, "webin reads 48 AC1", "0:99.10", "A:1105258159;C:824538054;G:854253688;T:1149538152;N:81068", 99, null, null, null, 1105258159, 824538054, 854253688, 1149538152, 81068, "ERX13231595", "ERS21098711", "ERA30883326", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19115, "ERR13822099", "ERX13224851", "ERS21098696", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38PR1 S1 R1 001.fastq.gz", "38 PR1", null, "organism:Danio rerio|collection date:2021 11 30|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 PR1", "webin reads 38 PR1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 PR1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38PR1_S1_R1_001.fastq.gz", "fastq", 4256158288.0, 42658127.0, "webin reads 38 PR1", "0:99.77", "A:1193880575;C:899261652;G:926114030;T:1236860186;N:41845", 99, null, null, null, 1193880575, 899261652, 926114030, 1236860186, 41845, "ERX13224851", "ERS21098696", "ERA30879152", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19116, "ERR13822119", "ERX13224871", "ERS21098699", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38PR4 S4 R1 001.fastq.gz", "38 PR4", null, "organism:Danio rerio|collection date:2021 12 07|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 PR4", "webin reads 38 PR4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 PR4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38PR4_S4_R1_001.fastq.gz", "fastq", 3726308046.0, 37591038.0, "webin reads 38 PR4", "0:99.13", "A:1043231302;C:789255840;G:812957881;T:1080801843;N:61180", 99, null, null, null, 1043231302, 789255840, 812957881, 1080801843, 61180, "ERX13224871", "ERS21098699", "ERA30879302", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19117, "ERR13835025", "ERX13237791", "ERS21098729", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58HC3 S34 R1 001.fastq.gz", "58 HC3", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 HC3", "webin reads 58 HC3", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 HC3", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58HC3_S34_R1_001.fastq.gz", "fastq", 3523899212.0, 35292613.0, "webin reads 58 HC3", "0:99.85", "A:1012516999;C:723225071;G:745152410;T:1042976092;N:28640", 99, null, null, null, 1012516999, 723225071, 745152410, 1042976092, 28640, "ERX13237791", "ERS21098729", "ERA30883757", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19118, "ERR13835014", "ERX13237780", "ERS21098727", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58HC1 S32 R1 001.fastq.gz", "58 HC1", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 HC1", "webin reads 58 HC1", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 HC1", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58HC1_S32_R1_001.fastq.gz", "fastq", 3436493821.0, 34597887.0, "webin reads 58 HC1", "0:99.33", "A:980894291;C:707196785;G:729948858;T:1018400124;N:53763", 99, null, null, null, 980894291, 707196785, 729948858, 1018400124, 53763, "ERX13237780", "ERS21098727", "ERA30883731", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19119, "ERR13834987", "ERX13237753", "ERS21098722", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58PR4 S27 R1 001.fastq.gz", "58 PR4", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 PR4", "webin reads 58 PR4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 PR4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58PR4_S27_R1_001.fastq.gz", "fastq", 3069040814.0, 30923422.0, "webin reads 58 PR4", "0:99.25", "A:875776938;C:633951750;G:653308475;T:905949639;N:54012", 99, null, null, null, 875776938, 633951750, 653308475, 905949639, 54012, "ERX13237753", "ERS21098722", "ERA30883641", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [19120, "ERR13822788", "ERX13225540", "ERS21098707", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "38HC4 S12 R1 001.fastq.gz", "38 HC4", null, "organism:Danio rerio|collection date:2021 12 07|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:38 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 38 HC4", "webin reads 38 HC4", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 38 HC4", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "38HC4_S12_R1_001.fastq.gz", "fastq", 3353994440.0, 33744828.0, "webin reads 38 HC4", "0:99.39", "A:939537209;C:709367668;G:731849729;T:973193819;N:46015", 99, null, null, null, 939537209, 709367668, 731849729, 973193819, 46015, "ERX13225540", "ERS21098707", "ERA30879650", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Pharyngula", "Embryo", "Eye", "Sensory System"], [19121, "ERR13834997", "ERX13237763", "ERS21098724", "ERP164534", "PRJEB80557", "RNAseq of Danio Rerio Photoreceptors  Amacrine  and Horizontal cells  collected 38  48  and 58 hpf", "e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed", "Other", "This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs  during the retinal lamination. We dissected retinae from three different developmental stages  corresponding to different stages in HCs lamination process  and separated HCs  PRs and HCs  based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed  converted to cDNA sequenced using the SMART SEQ2 protocol.", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", null, "retinal neurons", "58AC2 S29 R1 001.fastq.gz", "58 AC2", null, "organism:Danio rerio|collection date:2021 12 02|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:58 hpf type:retina|geographic location country and/or sea:Portugal", null, null, null, null, null, null, null, null, "Raw reads: 58 AC2", "webin reads 58 AC2", null, null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq X", null, "ERP164534", "Raw reads: 58 AC2", "ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01", "58AC2_S29_R1_001.fastq.gz", "fastq", 3872162091.0, 38898173.0, "webin reads 58 AC2", "0:99.55", "A:1111663794;C:793747086;G:817730996;T:1148980297;N:39918", 99, null, null, null, 1111663794, 793747086, 817730996, 1148980297, 39918, "ERX13237763", "ERS21098724", "ERA30883678", "Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive", "Gulbenkian Institute for Molecular Medicine", null, null, null, null, null, null, null, null, null, null, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "sc", "single_cell_plate", "smartseq", null, "Belgium", "2025-01-01", "Hatching", "Embryo", "Eye", "Sensory System"], [60824, "SRR12536647", "SRX9026398", "SRS7277848", "SRP279118", "PRJNA659812", "Defects in the zonule in loxl1 knock out zebrafish", "PRJNA659812", "Other", "Purposes: To investigate the roles of lysyl oxidase like 1 loxl1 in zebrafish eye development and the potency of loxl1 knock out in mimicking the ocular manifestations of Exfoliation Syndrome.Methods: CRISPR/Cas9 technology was used to generate a frameshift deletion shifting code deletion in zebrafish loxl1. Expression profiles and ocular manifestations of wildtype WT  heterozygous mutant loxl1+/  and homozygous mutant loxl1 /  zebrafish were analyzed in a range of developmental stages from whole zebrafish larvae to dissected adult zebrafish eyes using western blot  immunofluorescence  real time RT PCR and transcriptome resequencing analysis RNA seq. Scanning electron microscopy SEM was used to study the zonular structure and corneal fiber organization of adult zebrafish eyes.Results: The loxl1 mutation caused zonular bundling disorders in juvenile zebrafish and accumulation of pearl like particles adhering to the adult zebrafish zonule. SEM revealed more numerous particles  but of smaller size in loxl1 /  zebrafish compared with those in loxl1+/   although light microscopy showed that the overall staining of the zonule in loxl1+/  was darker than that in loxl1 / . Expression of transforming growth factor b tgfb pathway related proteins changed at the protein level  but not the mRNA level. The phosphorylated Smad3 pSmad3 level was locally activated in the iris side trabecular meshwork and ciliary body of loxl1 /  adults.Conclusions: Defects in the zonular bundling found in loxl1 knock out zebrafish indicate dysplasia. Compared with adult loxl1+/  zebrafish  more numerous but smaller pearl like particles adhered to the zonule in adult loxl1 /  zebrafish. loxl1 /  zebrafish is a promising animal model of XFS zonular pathology.", null, null, null, null, "6 adult loxl / ", null, "strain:AB|dev stage:1 ypf|sex:male|tissue:eye|source material id:6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "1ypf ko", "loxl1 zebrafish6", "loxl1 zebrafish6", "materials and methods", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP279118", null, null, "adult_ko_20190906N_CATCAAGT_S103_L002_R1_001.fastq.gz adult_ko_20190906N_CATCAAGT_S103_L002_R2_001.fastq.gz", "fastq fastq", 6375468848.0, 21110824.0, "adult ko 20190906N CATCAAGT S103 L002 R1 001.fastq.gz", "0:151 1:151", "A:1747106542;C:1437833414;G:1463260029;T:1727177401;N:91462", 151, 151, null, null, 1747106542, 1437833414, 1463260029, 1727177401, 91462, "SRX9026398", "SRS7277848", "SRA1118248", "Eye and ENT Hospital of Fudan University|Ophthalmology and Vision Science", "Eye and ENT Hospital of Fudan University", 2, 0.95303, 0.94195, 0.08955, 0.0854, 0.68878, 0.69059, 0.50285, 0.51191, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-08-27", "Adult", "Adult", "Eye", "Sensory System"], [60825, "SRR12536648", "SRX9026397", "SRS7277847", "SRP279118", "PRJNA659812", "Defects in the zonule in loxl1 knock out zebrafish", "PRJNA659812", "Other", "Purposes: To investigate the roles of lysyl oxidase like 1 loxl1 in zebrafish eye development and the potency of loxl1 knock out in mimicking the ocular manifestations of Exfoliation Syndrome.Methods: CRISPR/Cas9 technology was used to generate a frameshift deletion shifting code deletion in zebrafish loxl1. Expression profiles and ocular manifestations of wildtype WT  heterozygous mutant loxl1+/  and homozygous mutant loxl1 /  zebrafish were analyzed in a range of developmental stages from whole zebrafish larvae to dissected adult zebrafish eyes using western blot  immunofluorescence  real time RT PCR and transcriptome resequencing analysis RNA seq. Scanning electron microscopy SEM was used to study the zonular structure and corneal fiber organization of adult zebrafish eyes.Results: The loxl1 mutation caused zonular bundling disorders in juvenile zebrafish and accumulation of pearl like particles adhering to the adult zebrafish zonule. SEM revealed more numerous particles  but of smaller size in loxl1 /  zebrafish compared with those in loxl1+/   although light microscopy showed that the overall staining of the zonule in loxl1+/  was darker than that in loxl1 / . Expression of transforming growth factor b tgfb pathway related proteins changed at the protein level  but not the mRNA level. The phosphorylated Smad3 pSmad3 level was locally activated in the iris side trabecular meshwork and ciliary body of loxl1 /  adults.Conclusions: Defects in the zonular bundling found in loxl1 knock out zebrafish indicate dysplasia. Compared with adult loxl1+/  zebrafish  more numerous but smaller pearl like particles adhered to the zonule in adult loxl1 /  zebrafish. loxl1 /  zebrafish is a promising animal model of XFS zonular pathology.", null, null, null, null, "5 adult loxl1+/ ", null, "strain:AB|dev stage:1 ypf|sex:male|tissue:eye|source material id:5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "1ypf het", "loxl1 zebrafish5", "loxl1 zebrafish5", "materials and methods", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "SINGLE", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP279118", null, null, "adult_het_20190906N_CAGATCTG_S102_L002_R1_001.fastq.gz adult_het_20190906N_CAGATCTG_S102_L002_R2_001.fastq.gz", "fastq fastq", 6391126944.0, 21162672.0, "adult het 20190906N CAGATCTG S102 L002 R1 001.fastq.gz", "0:151 1:151", "A:1751058342;C:1440125694;G:1472861826;T:1726988667;N:92415", 151, 151, null, null, 1751058342, 1440125694, 1472861826, 1726988667, 92415, "SRX9026397", "SRS7277847", "SRA1118248", "Eye and ENT Hospital of Fudan University|Ophthalmology and Vision Science", "Eye and ENT Hospital of Fudan University", 2, 0.95672, 0.94643, 0.08558, 0.08353, 0.71407, 0.71453, 0.50434, 0.50279, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-08-27", "Adult", "Adult", "Eye", "Sensory System"], [60826, "SRR12536649", "SRX9026396", "SRS7277846", "SRP279118", "PRJNA659812", "Defects in the zonule in loxl1 knock out zebrafish", "PRJNA659812", "Other", "Purposes: To investigate the roles of lysyl oxidase like 1 loxl1 in zebrafish eye development and the potency of loxl1 knock out in mimicking the ocular manifestations of Exfoliation Syndrome.Methods: CRISPR/Cas9 technology was used to generate a frameshift deletion shifting code deletion in zebrafish loxl1. Expression profiles and ocular manifestations of wildtype WT  heterozygous mutant loxl1+/  and homozygous mutant loxl1 /  zebrafish were analyzed in a range of developmental stages from whole zebrafish larvae to dissected adult zebrafish eyes using western blot  immunofluorescence  real time RT PCR and transcriptome resequencing analysis RNA seq. Scanning electron microscopy SEM was used to study the zonular structure and corneal fiber organization of adult zebrafish eyes.Results: The loxl1 mutation caused zonular bundling disorders in juvenile zebrafish and accumulation of pearl like particles adhering to the adult zebrafish zonule. SEM revealed more numerous particles  but of smaller size in loxl1 /  zebrafish compared with those in loxl1+/   although light microscopy showed that the overall staining of the zonule in loxl1+/  was darker than that in loxl1 / . Expression of transforming growth factor b tgfb pathway related proteins changed at the protein level  but not the mRNA level. The phosphorylated Smad3 pSmad3 level was locally activated in the iris side trabecular meshwork and ciliary body of loxl1 /  adults.Conclusions: Defects in the zonular bundling found in loxl1 knock out zebrafish indicate dysplasia. 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