{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"SINGLE\" and experiment.library_selection = \"PCR\"", "rows": [[28470, "SRR26253203", "SRX21963295", "SRS19039869", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA IFN4 2", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 22|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA IFND2", "Small RNA IFND2", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "IFN4-2.deadaptor.fq.gz", "fastq", 278362309.0, 11056139.0, "IFN4 2.deadaptor.fq.gz", "0:25.18", "A:71944968;C:54562141;G:73333701;T:78511075;N:10424", 25, null, null, null, 71944968, 54562141, 73333701, 78511075, 10424, "SRX21963295", "SRS19039869", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.93133, null, 0.07401, null, 0.96181, null, 0.74558, null, 31, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28471, "SRR26253204", "SRX21963294", "SRS19039868", "SRP464138", "PRJNA1022587", "Danio rerio Raw sequence reads", "PRJNA1022587", "Whole Genome Sequencing", "In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. 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However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. 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However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.", null, null, null, null, "Small RNA Control 1", null, "strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 13|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Small RNAseq of zebrafish", "Small RNA C1", "Small RNA C1", "small RNA seq of zebrafish", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP464138", null, null, "Control-1.deadaptor.fq.gz", "fastq", 267090429.0, 11027241.0, "Control 1.deadaptor.fq.gz", "0:24.22", "A:70162511;C:50705437;G:69872659;T:76339682;N:10140", 24, null, null, null, 70162511, 50705437, 69872659, 76339682, 10140, "SRX21963284", "SRS19039858", "SRA1724093", "Shanghai Ocean University|College of Fisheries and Life Science", "Shanghai Ocean University", 1, 0.93267, null, 0.07189, null, 0.96735, null, 0.75447, null, 21, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-10-02", "Undetermined", "Undetermined", "Cell Line", "Cell Line"], [28496, "SRR26321412", "SRX22029502", "SRS19102283", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 1", "R27", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R27", "R27", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R27.fastq", "fastq", 23400.0, 312.0, "R27.fastq", "0:75", "A:7949;C:4612;G:4730;T:6100;N:9", 75, null, null, null, 7949, 4612, 4730, 6100, 9, "SRX22029502", "SRS19102283", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89642, null, 0.06772, null, 0.99827, null, 0.75, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28497, "SRR26321413", "SRX22029501", "SRS19102284", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 4", "R22", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R22", "R22", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R22.fastq", "fastq", 23400.0, 312.0, "R22.fastq", "0:75", "A:7470;C:4460;G:5063;T:6404;N:3", 75, null, null, null, 7470, 4460, 5063, 6404, 3, "SRX22029501", "SRS19102284", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87073, null, 0.12167, null, 0.99801, null, 0.73157, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28498, "SRR26321414", "SRX22029500", "SRS19102281", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "R21", "R21", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R21", "R21", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R21.fastq", "fastq", 23400.0, 312.0, "R21.fastq", "0:75", "A:7540;C:4349;G:4857;T:6646;N:8", 75, null, null, null, 7540, 4349, 4857, 6646, 8, "SRX22029500", "SRS19102281", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.8839, null, 0.04494, null, 0.99768, null, 0.72769, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28499, "SRR26321415", "SRX22029499", "SRS19102282", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 2", "R18", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R18", "R18", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R18.fastq", "fastq", 23400.0, 312.0, "R18.fastq", "0:75", "A:7380;C:4430;G:5069;T:6518;N:3", 75, null, null, null, 7380, 4430, 5069, 6518, 3, "SRX22029499", "SRS19102282", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87259, null, 0.11196, null, 0.99784, null, 0.69791, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28500, "SRR26321416", "SRX22029498", "SRS19102280", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 1", "R17", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R17", "R17", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R17.fastq", "fastq", 23400.0, 312.0, "R17.fastq", "0:75", "A:7322;C:4455;G:5111;T:6507;N:5", 75, null, null, null, 7322, 4455, 5111, 6507, 5, "SRX22029498", "SRS19102280", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90439, null, 0.12749, null, 0.99813, null, 0.71052, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28501, "SRR26321417", "SRX22029497", "SRS19102279", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 5", "R1", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R1", "R1", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R1.fastq", "fastq", 23400.0, 312.0, "R1.fastq", "0:75", "A:7934;C:4560;G:4922;T:5980;N:4", 75, null, null, null, 7934, 4560, 4922, 5980, 4, "SRX22029497", "SRS19102279", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87045, null, 0.10526, null, 0.99805, null, 0.71978, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28502, "SRR26321418", "SRX22029496", "SRS19102277", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 4", "R64", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R64", "R64", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R64.fastq", "fastq", 23400.0, 312.0, "R64.fastq", "0:75", "A:7844;C:4626;G:4804;T:6126;N:0", 75, null, null, null, 7844, 4626, 4804, 6126, 0, "SRX22029496", "SRS19102277", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90119, null, 0.07509, null, 0.99839, null, 0.8, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28503, "SRR26321419", "SRX22029495", "SRS19102278", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 3", "R61", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R61", "R61", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R61.fastq", "fastq", 23400.0, 312.0, "R61.fastq", "0:75", "A:7454;C:4556;G:4960;T:6425;N:5", 75, null, null, null, 7454, 4556, 4960, 6425, 5, "SRX22029495", "SRS19102278", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89098, null, 0.06015, null, 0.99813, null, 0.77102, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28504, "SRR26321420", "SRX22029494", "SRS19102276", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 4", "30", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "30", "30", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "30.fastq", "fastq", 23400.0, 312.0, "30.fastq", "0:75", "A:7732;C:4528;G:5150;T:5987;N:3", 75, null, null, null, 7732, 4528, 5150, 5987, 3, "SRX22029494", "SRS19102276", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.88447, null, 0.13147, null, 0.99772, null, 0.71584, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28505, "SRR26321421", "SRX22029493", "SRS19102275", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "R11", "R11", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "R11", "R11", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R11.fastq", "fastq", 23400.0, 312.0, "R11.fastq", "0:75", "A:7818;C:4507;G:5107;T:5956;N:12", 75, null, null, null, 7818, 4507, 5107, 5956, 12, "SRX22029493", "SRS19102275", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89345, null, 0.11475, null, 0.99847, null, 0.82258, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28506, "SRR26321422", "SRX22029492", "SRS19102274", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 2", "31", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "31", "31", "ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. 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