{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"PAIRED\", experiment.library_selection = \"RT-PCR\" and technology = \"10x\"", "rows": [[58872, "SRR11510448", "SRX8082500", "SRS6450585", "SRP255712", "PRJNA623798", "Single cell lineage tracing on endogenous scarring sites scLOESS", "PRJNA623798", "Other", "Lineage recording of zebrafish embryogenesis reveals early cell fate commitment", null, null, "The developmental history of a whole zebrafish organism were recording by LOESS Lineage tracing Of Endogenous Scarring Sites technique.  And both cell lineage histories and cell molecular profile were reconstructed by single cell RNA Seq profiling  with the help of single cell sequencing methods and self developed analysis strategies.", "Single Cell RNA Seq of a whole organism of zebrafish larva", "SC", null, "strain:AB line|age:7dpf|dev stage:larvae|sex:not applicable|tissue:Whole organism|collection date:2018 07 26|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Single Cell RNA Seq of a whole organism of zebrafish larva", "SC L3", "SC L3", "Zebrafish embryo at one cell stage were micro injected with gRNA pool and Cas9 mRNA mixture  and growth at standard condiction ttwo xxxdpf. Then a single larva were lysis into single cell suspension and the RNA profile were obtained by 10x Genomics Chromium Single Cell three prime Reagent Kits v2 Chemistry.", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "RT-PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP255712", null, null, "SC-I1_S1_L001_R1_001.fastq.gz SC-I1_S1_L001_R2_001.fastq.gz SC-I1_S1_L002_R1_001.fastq.gz SC-I1_S1_L002_R2_001.fastq.gz SC-I1_S1_L003_R1_001.fastq.gz SC-I1_S1_L003_R2_001.fastq.gz SC-I2_S1_L001_R1_001.fastq.gz SC-I2_S1_L001_R2_001.fastq.gz SC-I2_S1_L002_R1_001.fastq.gz SC-I2_S1_L002_R2_001.fastq.gz SC-I2_S1_L003_R1_001.fastq.gz SC-I2_S1_L003_R2_001.fastq.gz SC-I3_S1_L001_R1_001.fastq.gz SC-I3_S1_L001_R2_001.fastq.gz SC-I3_S1_L002_R1_001.fastq.gz SC-I3_S1_L002_R2_001.fastq.gz SC-I3_S1_L003_R1_001.fastq.gz SC-I3_S1_L003_R2_001.fastq.gz SC-I4_S1_L001_R1_001.fastq.gz SC-I4_S1_L001_R2_001.fastq.gz SC-I4_S1_L002_R1_001.fastq.gz SC-I4_S1_L002_R2_001.fastq.gz SC-I4_S1_L003_R1_001.fastq.gz SC-I4_S1_L003_R2_001.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq", 86925323584.0, 493893884.0, "SC I1 S1 L001 R1 001.fastq.gz", "0:26 1:150", "A:24075189135;C:19816237204;G:21200277502;T:21828035227;N:5584516", 26, 150, null, null, 24075189135, 19816237204, 21200277502, 21828035227, 5584516, "SRX8082500", "SRS6450585", "SRA1063827", "Sun Yat- sen University|Life Sicence School", "Sun Yat- sen University", 2, 0.00528, 0.77254, 0.00115, 0.06529, 0.98729, 0.8158, 0.41854, 0.50141, 26, 150, "T", "B", "sc-like readlen", "illumina", "hiseq_era", "unknown", "other", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2020-04-11", "Larval", "Larval", "Whole Organism", "All anatomical structures"]], "truncated": false, "filtered_table_rows_count": 1, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_layout\" = :p0 and \"experiment.library_selection\" = :p1 and \"technology\" = :p2 order by rowid limit 101", "params": {"p0": "PAIRED", "p1": "RT-PCR", "p2": "10x"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "TRANSCRIPTOMIC SINGLE CELL", "label": "TRANSCRIPTOMIC SINGLE CELL", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x&experiment.library_source=TRANSCRIPTOMIC+SINGLE+CELL", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "RT-PCR", "label": "RT-PCR", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&technology=10x", "selected": true}], "truncated": false}, 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"devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "Larval", "label": "Larval", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x&devstage_curation_coarse=Larval", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "Larval", "label": "Larval", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x&devstage_curation=Larval", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "All anatomical structures", "label": "All anatomical structures", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x&tissue_curation_coarse=All+anatomical+structures", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RT-PCR&technology=10x", "results": [{"value": "Whole Organism", "label": "Whole Organism", "count": 1, "toggle_url": 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