{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.library_layout = \"PAIRED\", experiment.library_selection = \"RANDOM PCR\" and tissue_curation_coarse = \"Reproductive System\"", "rows": [[49742, "SRR8197481", "SRX5016863", "SRS4049994", "SRP169068", "PRJNA495892", "Danio rerio Genome sequencing", "PRJNA495892", "Whole Genome Sequencing", "Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, null, "three samples of zebrafish unfertilized eggs  and three samples zebrafish fries at the stage of prim5.", "Model organism or animal sample from Danio rerio", "The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, "isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: prim5 stage", "Z2 3 F", "Z2 3 F", "The unfertilized eggs of zebrafish were taken as three samples Z1 1  Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1  Z2 2 and Z2 3 in the prim5 stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP169068", null, null, "Z2_3_1.fq.gz Z2_3_2.fq.gz", "fastq fastq", 6979181500.0, 27916726.0, "Z2 3 1.fq.gz", "0:125 1:125", "A:1822429760;C:1670132153;G:1694226275;T:1791552753;N:840559", 125, 125, null, null, 1822429760, 1670132153, 1694226275, 1791552753, 840559, "SRX5016863", "SRS4049994", "SRA810793", "Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.9586, 0.9518, 0.02217, 0.02129, 0.81022, 0.80921, 0.50342, 0.51319, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-11-16", "Multi-stage", "Embryo", "Oocyte", "Reproductive System"], [49743, "SRR8197482", "SRX5016862", "SRS4049994", "SRP169068", "PRJNA495892", "Danio rerio Genome sequencing", "PRJNA495892", "Whole Genome Sequencing", "Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, null, "three samples of zebrafish unfertilized eggs  and three samples zebrafish fries at the stage of prim5.", "Model organism or animal sample from Danio rerio", "The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, "isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: prim5 stage", "Z2 1 F", "Z2 1 F", "The unfertilized eggs of zebrafish were taken as three samples Z1 1  Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1  Z2 2 and Z2 3 in the prim5 stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP169068", null, null, "Z2_1_2.fq.gz Z2_1_1.fq.gz", "fastq fastq", 6728695750.0, 26914783.0, "Z2 1 1.fq.gz", "0:125 1:125", "A:1732100690;C:1624557456;G:1649046037;T:1722193010;N:798557", 125, 125, null, null, 1732100690, 1624557456, 1649046037, 1722193010, 798557, "SRX5016862", "SRS4049994", "SRA810793", "Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.9585, 0.95335, 0.01902, 0.01833, 0.8131, 0.81014, 0.48431, 0.493, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-11-16", "Multi-stage", "Embryo", "Oocyte", "Reproductive System"], [49744, "SRR8197483", "SRX5016861", "SRS4049994", "SRP169068", "PRJNA495892", "Danio rerio Genome sequencing", "PRJNA495892", "Whole Genome Sequencing", "Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, null, "three samples of zebrafish unfertilized eggs  and three samples zebrafish fries at the stage of prim5.", "Model organism or animal sample from Danio rerio", "The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, "isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: unfertilized egg", "Z1 3 F", "Z1 3 F", "The unfertilized eggs of zebrafish were taken as three samples Z1 1  Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1  Z2 2 and Z2 3 in the prim5 stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP169068", null, null, "Z1_3_1.fq.gz Z1_3_2.fq.gz", "fastq fastq", 6657035500.0, 26628142.0, "Z1 3 1.fq.gz", "0:125 1:125", "A:1796541492;C:1535300915;G:1557971133;T:1766443902;N:778058", 125, 125, null, null, 1796541492, 1535300915, 1557971133, 1766443902, 778058, "SRX5016861", "SRS4049994", "SRA810793", "Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.95543, 0.94989, 0.02312, 0.02201, 0.79689, 0.79421, 0.51212, 0.51203, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-11-16", "Multi-stage", "Embryo", "Oocyte", "Reproductive System"], [49745, "SRR8197484", "SRX5016860", "SRS4049994", "SRP169068", "PRJNA495892", "Danio rerio Genome sequencing", "PRJNA495892", "Whole Genome Sequencing", "Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, null, "three samples of zebrafish unfertilized eggs  and three samples zebrafish fries at the stage of prim5.", "Model organism or animal sample from Danio rerio", "The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, "isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: unfertilized egg", "Z1 2 F", "Z1 2 F", "The unfertilized eggs of zebrafish were taken as three samples Z1 1  Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1  Z2 2 and Z2 3 in the prim5 stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP169068", null, null, "Z1_2_1.fq.gz Z1_2_2.fq.gz", "fastq fastq", 8869328500.0, 35477314.0, "Z1 2 1.fq.gz", "0:125 1:125", "A:2367358711;C:2085652811;G:2116692954;T:2298597848;N:1026176", 125, 125, null, null, 2367358711, 2085652811, 2116692954, 2298597848, 1026176, "SRX5016860", "SRS4049994", "SRA810793", "Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.95776, 0.95084, 0.01896, 0.01811, 0.79823, 0.79608, 0.49565, 0.49345, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-11-18", "Multi-stage", "Embryo", "Oocyte", "Reproductive System"], [49746, "SRR8197485", "SRX5016859", "SRS4049994", "SRP169068", "PRJNA495892", "Danio rerio Genome sequencing", "PRJNA495892", "Whole Genome Sequencing", "Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, null, "three samples of zebrafish unfertilized eggs  and three samples zebrafish fries at the stage of prim5.", "Model organism or animal sample from Danio rerio", "The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, "isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: unfertilized egg", "Z1 1 F", "Z1 1 F", "The unfertilized eggs of zebrafish were taken as three samples Z1 1  Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1  Z2 2 and Z2 3 in the prim5 stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP169068", null, null, "Z1_1_1.fq.gz Z1_1_2.fq.gz", "fastq fastq", 7205390500.0, 28821562.0, "Z1 1 1.fq.gz", "0:125 1:125", "A:1900562357;C:1700185416;G:1728383049;T:1875415232;N:844446", 125, 125, null, null, 1900562357, 1700185416, 1728383049, 1875415232, 844446, "SRX5016859", "SRS4049994", "SRA810793", "Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.95593, 0.95003, 0.01844, 0.01778, 0.80064, 0.80008, 0.4858, 0.48331, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-11-18", "Multi-stage", "Embryo", "Oocyte", "Reproductive System"], [49747, "SRR8197486", "SRX5016858", "SRS4049994", "SRP169068", "PRJNA495892", "Danio rerio Genome sequencing", "PRJNA495892", "Whole Genome Sequencing", "Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, null, "three samples of zebrafish unfertilized eggs  and three samples zebrafish fries at the stage of prim5.", "Model organism or animal sample from Danio rerio", "The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.", null, "isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: prim5 stage", "Z2 2 F", "Z2 2 F", "The unfertilized eggs of zebrafish were taken as three samples Z1 1  Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1  Z2 2 and Z2 3 in the prim5 stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP169068", null, null, "Z2_2_2.fq.gz Z2_2_1.fq.gz", "fastq fastq", 7724266250.0, 30897065.0, "Z2 2 1.fq.gz", "0:125 1:125", "A:1986625683;C:1864133349;G:1894026843;T:1978566785;N:913590", 125, 125, null, null, 1986625683, 1864133349, 1894026843, 1978566785, 913590, "SRX5016858", "SRS4049994", "SRA810793", "Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.95577, 0.94831, 0.01968, 0.01899, 0.80793, 0.80667, 0.48789, 0.48551, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-11-16", "Multi-stage", "Embryo", "Oocyte", "Reproductive System"], [58533, "SRR11355387", "SRX7957249", "SRS6343356", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C2 3", "C2 3", null, "strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C2 320200327", "C2 320200327", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C2_3_1.fq.gz C2_3_2.fq.gz", "fastq fastq", 6857650800.0, 45717672.0, "C2 3 1.fq.gz", "0:150 1:150", "A:1826466263;C:1599272942;G:1580689630;T:1851144875;N:77090", 150, 150, null, null, 1826466263, 1599272942, 1580689630, 1851144875, 77090, "SRX7957249", "SRS6343356", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93222, null, 0.02854, null, 0.75138, null, 0.50759, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58534, "SRR11355388", "SRX7957248", "SRS6343355", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C2 2", "C2 2", null, "strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C2 220200326", "C2 220200326", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C2_2_1.fq.gz C2_2_2.fq.gz", "fastq fastq", 6859954800.0, 45733032.0, "C2 2 1.fq.gz", "0:150 1:150", "A:1836618967;C:1591135182;G:1572318102;T:1859806048;N:76501", 150, 150, null, null, 1836618967, 1591135182, 1572318102, 1859806048, 76501, "SRX7957248", "SRS6343355", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93237, null, 0.03248, null, 0.74663, null, 0.5081, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58535, "SRR11355389", "SRX7957247", "SRS6343354", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C2 1", "C2 1", null, "strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C2 120200325", "C2 120200325", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C2_1_1.fq.gz C2_1_2.fq.gz", "fastq fastq", 6618974400.0, 44126496.0, "C2 1 1.fq.gz", "0:150 1:150", "A:1774116288;C:1533828286;G:1511526952;T:1799423408;N:79466", 150, 150, null, null, 1774116288, 1533828286, 1511526952, 1799423408, 79466, "SRX7957247", "SRS6343354", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.9326, null, 0.02973, null, 0.75426, null, 0.50678, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58536, "SRR11355390", "SRX7957246", "SRS6343353", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C1 3", "C1 3", null, "strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C1 320200324", "C1 320200324", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C1_3_1.fq.gz C1_3_2.fq.gz", "fastq fastq", 6837729600.0, 45584864.0, "C1 3 1.fq.gz", "0:150 1:150", "A:1831266308;C:1587032733;G:1565071069;T:1853950421;N:409069", 150, 150, null, null, 1831266308, 1587032733, 1565071069, 1853950421, 409069, "SRX7957246", "SRS6343353", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93541, null, 0.03212, null, 0.74681, null, 0.50268, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58537, "SRR11355391", "SRX7957245", "SRS6343352", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C1 2", "C1 2", null, "strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C1 220200323", "C1 220200323", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C1_2_2.fq.gz C1_2_1.fq.gz", "fastq fastq", 6860328000.0, 45735520.0, "C1 2 1.fq.gz", "0:150 1:150", "A:1838176072;C:1591277709;G:1569605888;T:1861063734;N:204597", 150, 150, null, null, 1838176072, 1591277709, 1569605888, 1861063734, 204597, "SRX7957245", "SRS6343352", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93763, null, 0.033, null, 0.74617, null, 0.50287, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58538, "SRR11355392", "SRX7957244", "SRS6343351", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C1 1", "C1 1", null, "strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C1 120200322", "C1 120200322", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C1_1_1.fq.gz C1_1_2.fq.gz", "fastq fastq", 6865547700.0, 45770318.0, "C1 1 1.fq.gz", "0:150 1:150", "A:1841774713;C:1591288582;G:1570400871;T:1861867728;N:215806", 150, 150, null, null, 1841774713, 1591288582, 1570400871, 1861867728, 215806, "SRX7957244", "SRS6343351", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93567, null, 0.03152, null, 0.74653, null, 0.50239, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58539, "SRR11355393", "SRX7957243", "SRS6343350", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C0 3", "C0 3", null, "strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C0 320200321", "C0 320200321", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C0_3_1.fq.gz C0_3_2.fq.gz", "fastq fastq", 6824622600.0, 45497484.0, "C0 3 1.fq.gz", "0:150 1:150", "A:1833660953;C:1578510104;G:1558095174;T:1854128169;N:228200", 150, 150, null, null, 1833660953, 1578510104, 1558095174, 1854128169, 228200, "SRX7957243", "SRS6343350", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93758, null, 0.0323, null, 0.75024, null, 0.50852, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58540, "SRR11355394", "SRX7957242", "SRS6343349", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C0 2", "C0 2", null, "strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C0 220200320", "C0 220200320", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C0_2_2.fq.gz C0_2_1.fq.gz", "fastq fastq", 6819326400.0, 45462176.0, "C0 2 1.fq.gz", "0:150 1:150", "A:1837661215;C:1571877614;G:1550458835;T:1859103408;N:225328", 150, 150, null, null, 1837661215, 1571877614, 1550458835, 1859103408, 225328, "SRX7957242", "SRS6343349", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93697, null, 0.0339, null, 0.74793, null, 0.5035, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [58541, "SRR11355395", "SRX7957241", "SRS6343348", "SRP253408", "PRJNA613558", "Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture", "PRJNA613558", "Other", "As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease  the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation  adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study  combined with antibiotics bioaccumulated in ovary  we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish  and thus affect egg production and survival. Therefore  ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0  1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.", null, null, null, "C0 1", "C0 1", null, "strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish", "C0 120200319", "C0 120200319", "RNA seq of zebrafish in different conditions", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP253408", null, null, "C0_1_1.fq.gz C0_1_2.fq.gz", "fastq fastq", 7030804800.0, 46872032.0, "C0 1 1.fq.gz", "0:150 1:150", "A:1891469955;C:1624531422;G:1603124564;T:1911444454;N:234405", 150, 150, null, null, 1891469955, 1624531422, 1603124564, 1911444454, 234405, "SRX7957241", "SRS6343348", "SRA1056819", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.93519, null, 0.0328, null, 0.74602, null, 0.48272, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-03-20", "Undetermined", "Adult", "Gonad", "Reproductive System"], [76464, "SRR24957216", "SRX20715257", "SRS18006806", "SRP444571", "PRJNA984937", "Danio rerio Raw sequence reads", "PRJNA984937", "Whole Genome Sequencing", "To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model  we first performed a transcriptome analysis on the ovaries.", null, null, null, null, "WT1", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: female", "WT1", "WT1", "355bp", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP444571", null, null, "WT_3_1.fq.gz WT_3_2.fq.gz", "fastq fastq", 7193246700.0, 23977489.0, "WT 3 1.fq.gz", "0:150 1:150", "A:1899215463;C:1704365793;G:1700125063;T:1889255858;N:284523", 150, 150, null, null, 1899215463, 1704365793, 1700125063, 1889255858, 284523, "SRX20715257", "SRS18006806", "SRA1657875", "Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences", "Chinese Academy of Fishery Sciences", 2, 0.96018, 0.95972, 0.02154, 0.02156, 0.74783, 0.74752, 0.47659, 0.4779, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-19", "Adult", "Adult", "Gonad", "Reproductive System"], [76465, "SRR24957217", "SRX20715256", "SRS18006805", "SRP444571", "PRJNA984937", "Danio rerio Raw sequence reads", "PRJNA984937", "Whole Genome Sequencing", "To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model  we first performed a transcriptome analysis on the ovaries.", null, null, null, null, "WT2", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: female", "WT2", "WT2", "354bp", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP444571", null, null, "WT_2_1.fq.gz WT_2_2.fq.gz", "fastq fastq", 6692745000.0, 22309150.0, "WT 2 1.fq.gz", "0:150 1:150", "A:1754867143;C:1599183933;G:1593183572;T:1745248372;N:261980", 150, 150, null, null, 1754867143, 1599183933, 1593183572, 1745248372, 261980, "SRX20715256", "SRS18006805", "SRA1657875", "Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences", "Chinese Academy of Fishery Sciences", 2, 0.95144, 0.95135, 0.02095, 0.02093, 0.74783, 0.74797, 0.47881, 0.48019, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-19", "Adult", "Adult", "Gonad", "Reproductive System"], [76466, "SRR24957218", "SRX20715255", "SRS18006804", "SRP444571", "PRJNA984937", "Danio rerio Raw sequence reads", "PRJNA984937", "Whole Genome Sequencing", "To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model  we first performed a transcriptome analysis on the ovaries.", null, null, null, null, "WT3", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: female", "WT3", "WT3", "353bp", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP444571", null, null, "WT_1_1.fq.gz WT_1_2.fq.gz", "fastq fastq", 6063572400.0, 20211908.0, "WT 1 1.fq.gz", "0:150 1:150", "A:1587049845;C:1452167103;G:1446522880;T:1577597629;N:234943", 150, 150, null, null, 1587049845, 1452167103, 1446522880, 1577597629, 234943, "SRX20715255", "SRS18006804", "SRA1657875", "Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences", "Chinese Academy of Fishery Sciences", 2, 0.95503, 0.95566, 0.0198, 0.0198, 0.75189, 0.75205, 0.48404, 0.48544, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-19", "Adult", "Adult", "Gonad", "Reproductive System"], [76467, "SRR24957219", "SRX20715254", "SRS18006803", "SRP444571", "PRJNA984937", "Danio rerio Raw sequence reads", "PRJNA984937", "Whole Genome Sequencing", "To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model  we first performed a transcriptome analysis on the ovaries.", null, null, null, null, "cyp21a2 1", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: female", "cyp21a2 1", "cyp21a2 1", "352bp", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP444571", null, null, "cyp21a_3_1.fq.gz cyp21a_3_2.fq.gz", "fastq fastq", 6995989200.0, 23319964.0, "cyp21a 3 1.fq.gz", "0:150 1:150", "A:1835165397;C:1669847288;G:1667209860;T:1823520176;N:246479", 150, 150, null, null, 1835165397, 1669847288, 1667209860, 1823520176, 246479, "SRX20715254", "SRS18006803", "SRA1657875", "Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences", "Chinese Academy of Fishery Sciences", 2, 0.95816, 0.95833, 0.02281, 0.02265, 0.74823, 0.7487, 0.47417, 0.47569, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-19", "Adult", "Adult", "Gonad", "Reproductive System"], [76468, "SRR24957220", "SRX20715253", "SRS18006802", "SRP444571", "PRJNA984937", "Danio rerio Raw sequence reads", "PRJNA984937", "Whole Genome Sequencing", "To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model  we first performed a transcriptome analysis on the ovaries.", null, null, null, null, "cyp21a2 2", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: female", "cyp21a2 2", "cyp21a2 2", "351bp", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP444571", null, null, "cyp21a_2_1.fq.gz cyp21a_2_2.fq.gz", "fastq fastq", 7468139100.0, 24893797.0, "cyp21a 2 1.fq.gz", "0:150 1:150", "A:1948988233;C:1794014163;G:1789429610;T:1935404071;N:303023", 150, 150, null, null, 1948988233, 1794014163, 1789429610, 1935404071, 303023, "SRX20715253", "SRS18006802", "SRA1657875", "Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences", "Chinese Academy of Fishery Sciences", 2, 0.95662, 0.95647, 0.01866, 0.01855, 0.75067, 0.75043, 0.48064, 0.48347, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-19", "Adult", "Adult", "Gonad", "Reproductive System"], [76469, "SRR24957221", "SRX20715252", "SRS18006801", "SRP444571", "PRJNA984937", "Danio rerio Raw sequence reads", "PRJNA984937", "Whole Genome Sequencing", "To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model  we first performed a transcriptome analysis on the ovaries.", null, null, null, null, "cyp21a2 3", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: female", "cyp21a2 3", "cyp21a2 3", "350bp", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP444571", null, null, "cyp21a_1_1.fq.gz cyp21a_1_2.fq.gz", "fastq fastq", 6687974400.0, 22293248.0, "cyp21a 1 1.fq.gz", "0:150 1:150", "A:1760782650;C:1592288096;G:1584534831;T:1750325587;N:43236", 150, 150, null, null, 1760782650, 1592288096, 1584534831, 1750325587, 43236, "SRX20715252", "SRS18006801", "SRA1657875", "Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences", "Chinese Academy of Fishery Sciences", 2, 0.95394, 0.95415, 0.02019, 0.0204, 0.74921, 0.74834, 0.47901, 0.47809, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-19", "Adult", "Adult", "Gonad", "Reproductive System"]], "truncated": false, "filtered_table_rows_count": 21, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_layout\" = :p0 and \"experiment.library_selection\" = :p1 and \"tissue_curation_coarse\" = :p2 order by rowid limit 101", "params": {"p0": "PAIRED", "p1": "RANDOM PCR", "p2": "Reproductive System"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "RANDOM PCR", "label": "RANDOM PCR", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&tissue_curation_coarse=Reproductive+System", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "PAIRED", "label": "PAIRED", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "selected": true}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&experiment.platform=ILLUMINA", "selected": false}, {"value": "BGISEQ", "label": "BGISEQ", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&experiment.platform=BGISEQ", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "Adult", "label": "Adult", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&devstage_curation_coarse=Adult", "selected": false}, {"value": "Embryo", "label": "Embryo", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&devstage_curation_coarse=Embryo", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "Undetermined", "label": "Undetermined", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&devstage_curation=Undetermined", "selected": false}, {"value": "Adult", "label": "Adult", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&devstage_curation=Adult", "selected": false}, {"value": "Multi-stage", "label": "Multi-stage", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&devstage_curation=Multi-stage", "selected": false}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "Reproductive System", "label": "Reproductive System", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR", "selected": true}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "Gonad", "label": "Gonad", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&tissue_curation=Gonad", "selected": false}, {"value": "Oocyte", "label": "Oocyte", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&tissue_curation=Oocyte", "selected": false}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System", "results": [{"value": "unknown", "label": "unknown", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_layout=PAIRED&experiment.library_selection=RANDOM+PCR&tissue_curation_coarse=Reproductive+System&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 68.27260099998966}