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Overall design: Both size selected and non size selected libraries were made. Sequencing was performed using Illumina platform.", null, "pubmed:21743441", null, "ZiliIPTes", "GSM727524", null, "tissue:RNA obtained from immunoprecipitation with Zili antibody|strain:TL", "ZiliIPTes", "three prime adapter sequences were trimmed and inserts longer than 18 nt were mapped to the D. rerio genome Zv9.", "RNA obtained from immunoprecipitation with Zili antibody", null, "Tissues in IP lysis buffer were sonicated for 2 minutes at 4 oC and centrifuged for 10 minutes at 16000 rpm at 4 oC. Supernatant was used for IP. One IP contains 30 \u00c2\u00b5l Dynabeads Invitrogen  3 or 6 testes  and Zili antibody in a total volume of 500 \u00c2\u00b5l.  RNA was then size selected 18 35 nucleotides from gel. For cDNA synthesis  adaptors were ligated to the three prime and five prime ends of the RNAof the size selected immunoprecipitated fraction. First strand cDNA synthesis was then performed using an oligodT linker primer and M MLVRNase H  reverse transcriptase. cDNA was PCR amplified with adapter specific primers and used in Illumina sequencing.", null, "strain:TL", "GSM727524", "GSM727524: ZiliIPTes", "GSM727524: ZiliIPTes", "GSM727524: ZiliIPTes", "1", null, "GEO Accession:GSM727524", "RNA-Seq", "TRANSCRIPTOMIC", "size fractionation", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer II", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP007331", null, "read name barcode proc directive:ignore", "ZiliIPTes.fastq", "fastq", 995759064.0, 27659974.0, "GSM727524 1", "0:36", null, 36, null, null, null, null, null, null, null, null, "SRX079845", "SRS212651", "SRA039167", "GEO", "European Research Institute for the Biology of Ageing, University Medical Center Groningen", 1, 0.0537, null, 0.03117, null, 0.95856, null, 0.42091, null, 36, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "5prime", "size_fractionation", "unknown", "bulk", "unknown", "unknown", null, "Netherlands", "2011-05-20", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49175, "SRR7764540", "SRX4620156", "SRS3722694", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 14", "GSM3360022", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 14", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360022", "GSM3360022: hMYC 14; Danio rerio; RNA Seq", "GSM3360022", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360022", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_14_d_R2_001.fastq.gz MCB_14_d_R1_001.fastq.gz", "fastq fastq", 8041956188.0, 26628994.0, "GSM3360022 r1", "0:151 1:151", "A:2169107009;C:1867732731;G:1838645489;T:2164562982;N:1907977", 151, 151, null, null, 2169107009, 1867732731, 1838645489, 2164562982, 1907977, "SRX4620156", "SRS3722694", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.90129, 0.90181, 0.17265, 0.16628, 0.77914, 0.78571, 0.51437, 0.51601, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49176, "SRR7764539", "SRX4620155", "SRS3722693", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 13", "GSM3360021", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 13", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360021", "GSM3360021: hMYC 13; Danio rerio; RNA Seq", "GSM3360021", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360021", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_13_d_R1_001.fastq.gz MCB_13_d_R2_001.fastq.gz", "fastq fastq", 8396214872.0, 27802036.0, "GSM3360021 r1", "0:151 1:151", "A:2241185626;C:1969096150;G:1937906595;T:2246030255;N:1996246", 151, 151, null, null, 2241185626, 1969096150, 1937906595, 2246030255, 1996246, "SRX4620155", "SRS3722693", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.9263, 0.92555, 0.1672, 0.16003, 0.7754, 0.78143, 0.50818, 0.50565, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49177, "SRR7764538", "SRX4620154", "SRS3722692", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 12", "GSM3360020", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 12", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360020", "GSM3360020: hMYC 12; Danio rerio; RNA Seq", "GSM3360020", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360020", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_12_d_R2_001.fastq.gz MCB_12_d_R1_001.fastq.gz", "fastq fastq", 8640985570.0, 28612535.0, "GSM3360020 r1", "0:151 1:151", "A:2320458014;C:2008991633;G:1983687859;T:2325784420;N:2063644", 151, 151, null, null, 2320458014, 2008991633, 1983687859, 2325784420, 2063644, "SRX4620154", "SRS3722692", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.91667, 0.9169, 0.20552, 0.19745, 0.77137, 0.77768, 0.51563, 0.51361, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49178, "SRR7764537", "SRX4620153", "SRS3722691", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 11", "GSM3360019", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 11", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360019", "GSM3360019: hMYC 11; Danio rerio; RNA Seq", "GSM3360019", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360019", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_11_d_R1_001.fastq.gz MCB_11_d_R2_001.fastq.gz", "fastq fastq", 10375306338.0, 34355319.0, "GSM3360019 r1", "0:151 1:151", "A:2774834850;C:2433110341;G:2384852893;T:2780049207;N:2459047", 151, 151, null, null, 2774834850, 2433110341, 2384852893, 2780049207, 2459047, "SRX4620153", "SRS3722691", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.92646, 0.92634, 0.25883, 0.24912, 0.80667, 0.81294, 0.52396, 0.4604, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49179, "SRR7764536", "SRX4620152", "SRS3722690", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 10", "GSM3360018", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 10", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360018", "GSM3360018: hMYC 10; Danio rerio; RNA Seq", "GSM3360018", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360018", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_10_d_R1_001.fastq.gz MCB_10_d_R2_001.fastq.gz", "fastq fastq", 9103054630.0, 30142565.0, "GSM3360018 r1", "0:151 1:151", "A:2444515359;C:2120625212;G:2086999932;T:2448748127;N:2166000", 151, 151, null, null, 2444515359, 2120625212, 2086999932, 2448748127, 2166000, "SRX4620152", "SRS3722690", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.919, 0.91974, 0.20589, 0.19901, 0.78169, 0.78855, 0.51136, 0.5163, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49180, "SRR7764535", "SRX4620151", "SRS3722689", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 9", "GSM3360017", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 9", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360017", "GSM3360017: hMYC 9; Danio rerio; RNA Seq", "GSM3360017", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360017", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_9_d_R1_001.fastq.gz MCB_9_d_R2_001.fastq.gz", "fastq fastq", 9781069696.0, 32387648.0, "GSM3360017 r1", "0:151 1:151", "A:2593768575;C:2312524357;G:2270896742;T:2601565073;N:2314949", 151, 151, null, null, 2593768575, 2312524357, 2270896742, 2601565073, 2314949, "SRX4620151", "SRS3722689", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.9302, 0.9302, 0.16677, 0.16095, 0.78486, 0.79105, 0.51234, 0.50852, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49181, "SRR7764534", "SRX4620150", "SRS3722687", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 8", "GSM3360016", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 8", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360016", "GSM3360016: hMYC 8; Danio rerio; RNA Seq", "GSM3360016", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360016", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_8_c_GCCAAT_R1_concat.fastq.gz MCB_8_c_GCCAAT_R2_concat.fastq.gz", "fastq fastq", 5631730306.0, 27879853.0, "GSM3360016 r1", "0:101 1:101", "A:1502650481;C:1306810950;G:1314705252;T:1500209887;N:7353736", 101, 101, null, null, 1502650481, 1306810950, 1314705252, 1500209887, 7353736, "SRX4620150", "SRS3722687", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.93418, 0.93562, 0.20662, 0.20876, 0.78175, 0.78455, 0.51374, 0.50871, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49182, "SRR7764533", "SRX4620149", "SRS3722688", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 6", "GSM3360015", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 6", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360015", "GSM3360015: hMYC 6; Danio rerio; RNA Seq", "GSM3360015", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360015", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_6_c_TGACCA_R1_concat.fastq.gz MCB_6_c_TGACCA_R2_concat.fastq.gz", "fastq fastq", 5005976120.0, 24782060.0, "GSM3360015 r1", "0:101 1:101", "A:1337000499;C:1160240242;G:1164651573;T:1337549504;N:6534302", 101, 101, null, null, 1337000499, 1160240242, 1164651573, 1337549504, 6534302, "SRX4620149", "SRS3722688", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.93447, 0.93694, 0.24013, 0.24194, 0.78569, 0.78843, 0.51039, 0.51234, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49183, "SRR7764532", "SRX4620148", "SRS3722686", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 5", "GSM3360014", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 5", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. 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Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 4", "GSM3360013", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 4", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360013", "GSM3360013: hMYC 4; Danio rerio; RNA Seq", "GSM3360013", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. 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Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 3", "GSM3360012", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 3", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360012", "GSM3360012: hMYC 3; Danio rerio; RNA Seq", "GSM3360012", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", "GEO Accession:GSM3360012", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP159053", null, null, "MCB_3_c_AGTTCC_R1_concat.fastq.gz MCB_3_c_AGTTCC_R2_concat.fastq.gz", "fastq fastq", 4554953954.0, 22549277.0, "GSM3360012 r1", "0:101 1:101", "A:1189333550;C:1082661290;G:1094370390;T:1182606305;N:5982419", 101, 101, null, null, 1189333550, 1082661290, 1094370390, 1182606305, 5982419, "SRX4620146", "SRS3722683", "SRA764101", "GEO", "Pediatrics, University of Oklahoma Health Sciences Center", 2, 0.92378, 0.92708, 0.10269, 0.10292, 0.76051, 0.76199, 0.51083, 0.50811, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "trueseq", "bulk", "unknown", "unknown", null, "United States", "2018-08-29", "Undetermined", "Undetermined", "Trunk", "Surface Structure"], [49186, "SRR7764529", "SRX4620145", "SRS3722685", "SRP159053", "PRJNA488354", "Molecularly distinct models of zebrafish Myc induced B cell leukemia", "GSE119173", "Transcriptome Analysis", "The goal of this study was to compare transcriptomic profiles of two recent B cell ALL models in zebrafish  expressing either mMyc GSE108855 or hMYC transgenes. 13 unique hMYC expressing samples are included. Overall design: 13 zebrafish ALL from the rag2:hMYC; lck:GFP double transgeneic background.", null, "pubmed:30573774", null, "hMYC 2", "GSM3360011", null, "tissue:GFP+ FACS purified ALL from total body|strain:rag2:hMYC; lck:eGFP double transgenic line", "hMYC 2", "Illumina bcl2fastq2 was used for basecalling. RNA Seq data were processed as previously described in Garcia et al.  2018 PMID 29749398.  Briefly  reads were aligned using STAR Dobin et al.  2013 to GRCz10.  Picard was used to filter out potential PCR duplicates.  Counts were assigned to each gene using featureCounts Liao et al.  2014. Genome build: GRCz10 Supplementary files format and content: tab delimited text file includes count matrix for all samples", "GFP+ FACS purified ALL from total body", null, "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols", null, "strain:rag2:hMYC;lck:eGFP double transgenic line", "GSM3360011", "GSM3360011: hMYC 2; Danio rerio; RNA Seq", "GSM3360011", null, "1", "Trizol extraction of total RNA was performed according to the manufacturer's instructions. Illumina TruSeq Stranded RNA Sample Prep Kit Cat#FC 122 1001 was used with 100 ng of total RNA for the construction of sequencing libraries. 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