{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where devstage_curation_coarse = \"Embryo\" and experiment.platform = \"ILLUMINA\"", "rows": [[0, "DRR314108", "DRX303511", "DRS233566", "DRP008373", "PRJDB12134", "Comparison of expression profile between banp mutant and wildtype sibling.", "DRP008373", "Other", "To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. 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To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample2", "SAMD00400817", null, "sample name:rw147 2.5dpf Mutant rep 2|biological replicate:2", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400817", "DRX305188", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "1510Application ReadForward11Application ReadReverse76", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400817", null, null, null, 9850145990.0, 32782079.0, "DRR315796", "0:150.26 1:150.21", "A:2636205537;C:2286508705;G:2319481100;T:2607600624;N:350024", 150, 150, null, null, 2636205537, 2286508705, 2319481100, 2607600624, 350024, "DRX305188", "DRS231983", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95193, 0.95472, 0.09722, 0.09375, 0.7138, 0.71299, 0.45542, 0.45994, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [13, "DRR315795", "DRX305187", "DRS231982", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample1", "SAMD00400816", null, "sample name:rw147 2.5dpf Mutant rep 1|biological replicate:1", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400816", "DRX305187", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "1510Application ReadForward11Application ReadReverse76", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400816", null, null, null, 9542039835.0, 31780260.0, "DRR315795", "0:150.15 1:150.10", "A:2543384204;C:2224374632;G:2258183435;T:2515655339;N:442225", 150, 150, null, null, 2543384204, 2224374632, 2258183435, 2515655339, 442225, "DRX305187", "DRS231982", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.9528, 0.95591, 0.08656, 0.0828, 0.70352, 0.70331, 0.45316, 0.44914, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [60, "DRR032764", "DRX029570", "DRS049969", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr shield 2", "SAMD00028161", null, "sample name:Dr shield 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:shield|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028161", "DRX029570", "Dr shield 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028161", null, null, null, 3644397900.0, 36443979.0, "DRR032764", "0:100 1:0", "A:986071173;C:842367218;G:837686080;T:978236607;N:36822", 100, 0, null, null, 986071173, 842367218, 837686080, 978236607, 36822, "DRX029570", "DRS049969", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92419, null, 0.08269, null, 0.75558, null, 0.47863, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [61, "DRR032763", "DRX029569", "DRS049968", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr shield 1", "SAMD00028160", null, "sample name:Dr shield 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:shield|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028160", "DRX029569", "Dr shield 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028160", null, null, null, 3834622000.0, 38346220.0, "DRR032763", "0:100 1:0", "A:1043352851;C:880011834;G:876775415;T:1034444253;N:37647", 100, 0, null, null, 1043352851, 880011834, 876775415, 1034444253, 37647, "DRX029569", "DRS049968", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92305, null, 0.09126, null, 0.75481, null, 0.47587, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [62, "DRR032762", "DRX029568", "DRS049967", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr prime5 6 3", "SAMD00028159", null, "sample name:Dr prime5 6 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028159", "DRX029568", "Dr prime5 6 3", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028159", null, null, null, 3903332800.0, 39033328.0, "DRR032762", "0:100 1:0", "A:1050045822;C:908538410;G:900588661;T:1044116537;N:43370", 100, 0, null, null, 1050045822, 908538410, 900588661, 1044116537, 43370, "DRX029568", "DRS049967", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92761, null, 0.07976, null, 0.69126, null, 0.46568, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [63, "DRR032761", "DRX029567", "DRS049966", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr prime5 6 2", "SAMD00028158", null, "sample name:Dr prime5 6 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028158", "DRX029567", "Dr prime5 6 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028158", null, null, null, 3678549700.0, 36785497.0, "DRR032761", "0:100 1:0", "A:986526644;C:857762765;G:853417738;T:980801764;N:40789", 100, 0, null, null, 986526644, 857762765, 853417738, 980801764, 40789, "DRX029567", "DRS049966", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92689, null, 0.07872, null, 0.6928, null, 0.46577, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [64, "DRR032760", "DRX029566", "DRS049965", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr prime5 6 1", "SAMD00028157", null, "sample name:Dr prime5 6 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028157", "DRX029566", "Dr prime5 6 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028157", null, null, null, 3863129500.0, 38631295.0, "DRR032760", "0:100 1:0", "A:1035240477;C:901625010;G:895370149;T:1030851937;N:41927", 100, 0, null, null, 1035240477, 901625010, 895370149, 1030851937, 41927, "DRX029566", "DRS049965", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92337, null, 0.07522, null, 0.69315, null, 0.46516, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [65, "DRR032759", "DRX029565", "DRS049964", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr prime25 2", "SAMD00028156", null, "sample name:Dr prime25 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028156", "DRX029565", "Dr prime25 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028156", null, null, null, 3750136100.0, 37501361.0, "DRR032759", "0:100 1:0", "A:1013528040;C:866734984;G:862431819;T:1007403208;N:38049", 100, 0, null, null, 1013528040, 866734984, 862431819, 1007403208, 38049, "DRX029565", "DRS049964", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92019, null, 0.09079, null, 0.68304, null, 0.47083, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [66, "DRR032758", "DRX029564", "DRS049963", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr prime25 1", "SAMD00028155", null, "sample name:Dr prime25 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028155", "DRX029564", "Dr prime25 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028155", null, null, null, 3544862700.0, 35448627.0, "DRR032758", "0:100 1:0", "A:952135895;C:825841753;G:821757889;T:945087927;N:39236", 100, 0, null, null, 952135895, 825841753, 821757889, 945087927, 39236, "DRX029564", "DRS049963", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92229, null, 0.08344, null, 0.68525, null, 0.466, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [67, "DRR032757", "DRX029563", "DRS049962", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 97 individuals", "Dr bud 2", "SAMD00028154", null, "sample name:Dr bud 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028154", "DRX029563", "Dr bud 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028154", null, null, null, 4104778200.0, 41047782.0, "DRR032757", "0:100 1:0", "A:1116316188;C:944738800;G:936257056;T:1107423486;N:42670", 100, 0, null, null, 1116316188, 944738800, 936257056, 1107423486, 42670, "DRX029563", "DRS049962", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92945, null, 0.10493, null, 0.73407, null, 0.47824, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [68, "DRR032756", "DRX029562", "DRS049961", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr bud 1", "SAMD00028153", null, "sample name:Dr bud 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028153", "DRX029562", "Dr bud 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028153", null, null, null, 4540291000.0, 45402910.0, "DRR032756", "0:100 1:0", "A:1237914068;C:1042346110;G:1033172731;T:1226799791;N:58300", 100, 0, null, null, 1237914068, 1042346110, 1033172731, 1226799791, 58300, "DRX029562", "DRS049961", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92628, null, 0.10478, null, 0.7391, null, 0.46461, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Undetermined", "Embryo", "Whole Organism", "All anatomical structures"], [69, "DRR032755", "DRX029561", "DRS049960", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr 90epiboly 2", "SAMD00028152", null, "sample name:Dr 90epiboly 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:90epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028152", "DRX029561", "Dr 90epiboly 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028152", null, null, null, 3572358600.0, 35723586.0, "DRR032755", "0:100 1:0", "A:971653450;C:821326559;G:816855636;T:962477457;N:45498", 100, 0, null, null, 971653450, 821326559, 816855636, 962477457, 45498, "DRX029561", "DRS049960", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92485, null, 0.10642, null, 0.74213, null, 0.47012, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [70, "DRR032754", "DRX029560", "DRS049959", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr 90epiboly 1", "SAMD00028151", null, "sample name:Dr 90epiboly 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:90epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028151", "DRX029560", "Dr 90epiboly 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028151", null, null, null, 3423980500.0, 34239805.0, "DRR032754", "0:100 1:0", "A:933088185;C:785251613;G:780911148;T:924686406;N:43148", 100, 0, null, null, 933088185, 785251613, 780911148, 924686406, 43148, "DRX029560", "DRS049959", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92436, null, 0.10881, null, 0.74255, null, 0.47068, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [71, "DRR032753", "DRX029559", "DRS049958", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 114 individuals", "Dr 8cell 2", "SAMD00028150", null, "sample name:Dr 8cell 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:8cell|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028150", "DRX029559", "Dr 8cell 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028150", null, null, null, 3708921900.0, 37089219.0, "DRR032753", "0:100 1:0", "A:985502141;C:874161613;G:869551685;T:979663686;N:42775", 100, 0, null, null, 985502141, 874161613, 869551685, 979663686, 42775, "DRX029559", "DRS049958", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.93329, null, 0.02366, null, 0.78896, null, 0.47447, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Cleavage", "Embryo", "Whole Organism", "All anatomical structures"], [72, "DRR032752", "DRX029558", "DRS049957", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 96 individuals", "Dr 8cell 1", "SAMD00028149", null, "sample name:Dr 8cell 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:8cell|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028149", "DRX029558", "Dr 8cell 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028149", null, null, null, 3666991200.0, 36669912.0, "DRR032752", "0:100 1:0", "A:976118513;C:862559696;G:858017821;T:970254302;N:40868", 100, 0, null, null, 976118513, 862559696, 858017821, 970254302, 40868, "DRX029558", "DRS049957", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.934, null, 0.02403, null, 0.78877, null, 0.46902, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Cleavage", "Embryo", "Whole Organism", "All anatomical structures"], [73, "DRR032751", "DRX029557", "DRS049956", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr 75epiboly 2", "SAMD00028148", null, "sample name:Dr 75epiboly 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:75epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028148", "DRX029557", "Dr 75epiboly 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028148", null, null, null, 3252021500.0, 32520215.0, "DRR032751", "0:100 1:0", "A:885527595;C:746750899;G:742907892;T:876794123;N:40991", 100, 0, null, null, 885527595, 746750899, 742907892, 876794123, 40991, "DRX029557", "DRS049956", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92594, null, 0.10181, null, 0.74862, null, 0.47789, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [74, "DRR032750", "DRX029556", "DRS049955", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr 75epiboly 1", "SAMD00028147", null, "sample name:Dr 75epiboly 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:75epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028147", "DRX029556", "Dr 75epiboly 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028147", null, null, null, 3785053700.0, 37850537.0, "DRR032750", "0:100 1:0", "A:1029014798;C:870946157;G:867537069;T:1017508684;N:46992", 100, 0, null, null, 1029014798, 870946157, 867537069, 1017508684, 46992, "DRX029556", "DRS049955", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92346, null, 0.10046, null, 0.74921, null, 0.47295, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"], [77, "DRR032747", "DRX029553", "DRS049952", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 6somite 2", "SAMD00028144", null, "sample name:Dr 6somite 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:6somite|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028144", "DRX029553", "Dr 6somite 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028144", null, null, null, 3704431000.0, 37044310.0, "DRR032747", "0:100 1:0", "A:1001844161;C:856702913;G:850695568;T:995148798;N:39560", 100, 0, null, null, 1001844161, 856702913, 850695568, 995148798, 39560, "DRX029553", "DRS049952", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92633, null, 0.09211, null, 0.72107, null, 0.47195, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Segmentation", "Embryo", "Whole Organism", "All anatomical structures"], [78, "DRR032746", "DRX029552", "DRS049951", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 6somite 1", "SAMD00028143", null, "sample name:Dr 6somite 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:6somite|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028143", "DRX029552", "Dr 6somite 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028143", null, null, null, 3529311900.0, 35293119.0, "DRR032746", "0:100 1:0", "A:953957996;C:816824469;G:811403696;T:947089530;N:36209", 100, 0, null, null, 953957996, 816824469, 811403696, 947089530, 36209, "DRX029552", "DRS049951", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92437, null, 0.09257, null, 0.72113, null, 0.47004, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Segmentation", "Embryo", "Whole Organism", "All anatomical structures"], [79, "DRR032745", "DRX029551", "DRS049950", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 60h 2", "SAMD00028142", null, "sample name:Dr 60h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028142", "DRX029551", "Dr 60h 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028142", null, null, null, 3875337000.0, 38753370.0, "DRR032745", "0:100 1:0", "A:1042558903;C:899892111;G:896867583;T:1035981420;N:36983", 100, 0, null, null, 1042558903, 899892111, 896867583, 1035981420, 36983, "DRX029551", "DRS049950", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.91891, null, 0.09445, null, 0.66156, null, 0.45564, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [80, "DRR032744", "DRX029550", "DRS049949", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 60h 1", "SAMD00028141", null, "sample name:Dr 60h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028141", "DRX029550", "Dr 60h 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028141", null, null, null, 3538468200.0, 35384682.0, "DRR032744", "0:100 1:0", "A:960664313;C:812459988;G:809014008;T:956295205;N:34686", 100, 0, null, null, 960664313, 812459988, 809014008, 956295205, 34686, "DRX029550", "DRS049949", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.91388, null, 0.10346, null, 0.66076, null, 0.45203, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [84, "DRR032740", "DRX029546", "DRS049945", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 48h 2", "SAMD00028137", null, "sample name:Dr 48h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028137", "DRX029546", "Dr 48h 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028137", null, null, null, 3702804700.0, 37028047.0, "DRR032740", "0:100 1:0", "A:993931475;C:862403562;G:857808891;T:988623734;N:37038", 100, 0, null, null, 993931475, 862403562, 857808891, 988623734, 37038, "DRX029546", "DRS049945", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92508, null, 0.08526, null, 0.68349, null, 0.45769, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [85, "DRR032739", "DRX029545", "DRS049944", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 48h 1", "SAMD00028136", null, "sample name:Dr 48h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028136", "DRX029545", "Dr 48h 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028136", null, null, null, 3980240400.0, 39802404.0, "DRR032739", "0:100 1:0", "A:1070497788;C:925240883;G:920038728;T:1064422474;N:40527", 100, 0, null, null, 1070497788, 925240883, 920038728, 1064422474, 40527, "DRX029545", "DRS049944", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92349, null, 0.08681, null, 0.67874, null, 0.46565, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [86, "DRR032738", "DRX029544", "DRS049943", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr 32cell 2", "SAMD00028135", null, "sample name:Dr 32cell 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:32cell|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028135", "DRX029544", "Dr 32cell 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028135", null, null, null, 3678713000.0, 36787130.0, "DRR032738", "0:100 1:0", "A:981005900;C:863203049;G:859660640;T:974807835;N:35576", 100, 0, null, null, 981005900, 863203049, 859660640, 974807835, 35576, "DRX029544", "DRS049943", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.93302, null, 0.02468, null, 0.77441, null, 0.47485, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Cleavage", "Embryo", "Whole Organism", "All anatomical structures"], [87, "DRR032737", "DRX029543", "DRS049942", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 95 individuals", "Dr 32cell 1", "SAMD00028134", null, "sample name:Dr 32cell 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:32cell|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028134", "DRX029543", "Dr 32cell 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028134", null, null, null, 3870906500.0, 38709065.0, "DRR032737", "0:100 1:0", "A:1030407751;C:909948718;G:905608620;T:1024897443;N:43968", 100, 0, null, null, 1030407751, 909948718, 905608620, 1024897443, 43968, "DRX029543", "DRS049942", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.93364, null, 0.02484, null, 0.77307, null, 0.47588, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Cleavage", "Embryo", "Whole Organism", "All anatomical structures"], [88, "DRR032736", "DRX029542", "DRS049941", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 100 individuals", "Dr zfs:0000015 2", "SAMD00028133", null, "sample name:Dr zfs:0000015 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:zfs:0000015|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028133", "DRX029542", "Dr zfs:0000015 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028133", null, null, null, 3129028500.0, 31290285.0, "DRR032736", "0:100 1:0", "A:849515903;C:721550282;G:717777586;T:840154982;N:29747", 100, 0, null, null, 849515903, 721550282, 717777586, 840154982, 29747, "DRX029542", "DRS049941", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92724, null, 0.07971, null, 0.74657, null, 0.47796, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Blastula", "Embryo", "Whole Organism", "All anatomical structures"], [89, "DRR032735", "DRX029541", "DRS049940", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. 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In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 107 individuals", "Dr 2cell 2", "SAMD00028131", null, "sample name:Dr 2cell 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:2cell|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028131", "DRX029540", "Dr 2cell 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028131", null, null, null, 3687517000.0, 36875170.0, "DRR032734", "0:100 1:0", "A:975272080;C:873518282;G:869743434;T:968941851;N:41353", 100, 0, null, null, 975272080, 873518282, 869743434, 968941851, 41353, "DRX029540", "DRS049939", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.93204, null, 0.02088, null, 0.81639, null, 0.47553, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Cleavage", "Embryo", "Whole Organism", "All anatomical structures"], [91, "DRR032733", "DRX029539", "DRS049938", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. 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In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 80 individuals", "Dr 14somite 3", "SAMD00028129", null, "sample name:Dr 14somite 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male female and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028129", "DRX029538", "Dr 14somite 3", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "1000Application ReadForward1", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028129", null, null, null, 3734610500.0, 37346105.0, "DRR032732", "0:100 1:0", "A:1009418541;C:863710067;G:858061383;T:1003378800;N:41709", 100, 0, null, null, 1009418541, 863710067, 858061383, 1003378800, 41709, "DRX029538", "DRS049937", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92401, null, 0.08815, null, 0.70816, null, 0.46602, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Segmentation", "Embryo", "Whole Organism", "All anatomical structures"], [93, "DRR032731", "DRX029537", "DRS049936", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. 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Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. 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This submission includes reads tagged with the sequence GCAATCCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#90.cram", "cram", 327632850.0, 2184219.0, "SC RUN 21115 7#90", "0:75 1:75", "A:85924891;C:77302972;G:77056818;T:87325377;N:22792", 75, 75, null, null, 85924891, 77302972, 77056818, 87325377, 22792, "ERX1884476", "ERS1343310", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95516, 0.95885, 0.12908, 0.12567, 0.68024, 0.68073, 0.4789, 0.46603, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1351, "ERR1821982", "ERX1884474", "ERS1343308", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 24", "SAMEA4431859", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:10Z|INSDC status:public|Submitter Id:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#88", "DN465656V:H11", "Illumina sequencing of library DN465656V:H11 constructed from sample accession ERS1343308 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GATAGAGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#88.cram", "cram", 341873100.0, 2279154.0, "SC RUN 21115 7#88", "0:75 1:75", "A:90890336;C:79583107;G:79122986;T:92253133;N:23538", 75, 75, null, null, 90890336, 79583107, 79122986, 92253133, 23538, "ERX1884474", "ERS1343308", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95206, 0.95482, 0.13868, 0.13387, 0.67574, 0.67608, 0.4731, 0.47619, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1353, "ERR1821980", "ERX1884472", "ERS1343306", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 2", "SAMEA4431857", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#86", "DN465656V:F11", "Illumina sequencing of library DN465656V:F11 constructed from sample accession ERS1343306 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTTGTCGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#86.cram", "cram", 298295250.0, 1988635.0, "SC RUN 21115 7#86", "0:75 1:75", "A:78320474;C:70341391;G:69945735;T:79667042;N:20608", 75, 75, null, null, 78320474, 70341391, 69945735, 79667042, 20608, "ERX1884472", "ERS1343306", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95656, 0.96027, 0.12066, 0.11593, 0.68454, 0.68669, 0.47075, 0.47796, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1354, "ERR1821979", "ERX1884471", "ERS1343305", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 16", "SAMEA4431856", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#85", "DN465656V:E11", "Illumina sequencing of library DN465656V:E11 constructed from sample accession ERS1343305 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GAGGATGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#85.cram", "cram", 359866950.0, 2399113.0, "SC RUN 21115 7#85", "0:75 1:75", "A:93719620;C:85604760;G:85368955;T:95149504;N:24111", 75, 75, null, null, 93719620, 85604760, 85368955, 95149504, 24111, "ERX1884471", "ERS1343305", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9588, 0.96228, 0.12915, 0.12531, 0.69877, 0.69994, 0.48415, 0.48329, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1355, "ERR1821978", "ERX1884470", "ERS1343304", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 2", "SAMEA4431855", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:06Z|INSDC status:public|Submitter Id:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#84", "DN465656V:D11", "Illumina sequencing of library DN465656V:D11 constructed from sample accession ERS1343304 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTAAGGTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#84.cram", "cram", 343587900.0, 2290586.0, "SC RUN 21115 7#84", "0:75 1:75", "A:88614226;C:82509443;G:82384006;T:90057117;N:23108", 75, 75, null, null, 88614226, 82509443, 82384006, 90057117, 23108, "ERX1884470", "ERS1343304", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95996, 0.9639, 0.12325, 0.11918, 0.6872, 0.68838, 0.47479, 0.4727, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1357, "ERR1821976", "ERX1884468", "ERS1343302", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 12", "SAMEA4431853", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#82", "DN465656V:B11", "Illumina sequencing of library DN465656V:B11 constructed from sample accession ERS1343302 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GAGCCAAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#82.cram", "cram", 340696650.0, 2271311.0, "SC RUN 21115 7#82", "0:75 1:75", "A:90082676;C:79663831;G:79306009;T:91620522;N:23612", 75, 75, null, null, 90082676, 79663831, 79306009, 91620522, 23612, "ERX1884468", "ERS1343302", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95466, 0.95796, 0.1244, 0.11949, 0.68185, 0.68128, 0.47379, 0.47395, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1363, "ERR1821970", "ERX1884462", "ERS1343296", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 12", "SAMEA4431847", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:59Z|INSDC status:public|Submitter Id:89901d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89901d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#76", "DN465656V:D10", "Illumina sequencing of library DN465656V:D10 constructed from sample accession ERS1343296 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTACATCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#76.cram", "cram", 318221850.0, 2121479.0, "SC RUN 21115 7#76", "0:75 1:75", "A:83320795;C:75194711;G:74954216;T:84731231;N:20897", 75, 75, null, null, 83320795, 75194711, 74954216, 84731231, 20897, "ERX1884462", "ERS1343296", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95709, 0.9592, 0.13197, 0.12745, 0.67608, 0.6771, 0.47647, 0.47533, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1365, "ERR1821968", "ERX1884460", "ERS1343294", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 20", "SAMEA4431845", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:58Z|INSDC status:public|Submitter Id:897f0620 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:897f0620 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#74", "DN465656V:B10", "Illumina sequencing of library DN465656V:B10 constructed from sample accession ERS1343294 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GGTCGTGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#74.cram", "cram", 336626850.0, 2244179.0, "SC RUN 21115 7#74", "0:75 1:75", "A:87825164;C:79779356;G:79631566;T:89367083;N:23681", 75, 75, null, null, 87825164, 79779356, 79631566, 89367083, 23681, "ERX1884460", "ERS1343294", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95683, 0.96064, 0.13119, 0.12727, 0.67892, 0.67955, 0.47005, 0.46207, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1366, "ERR1821967", "ERX1884459", "ERS1343293", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 7", "SAMEA4431844", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89765390 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#73", "DN465656V:A10", "Illumina sequencing of library DN465656V:A10 constructed from sample accession ERS1343293 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GCAACATT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#73.cram", "cram", 320242950.0, 2134953.0, "SC RUN 21115 7#73", "0:75 1:75", "A:84132446;C:75309652;G:75169050;T:85609846;N:21956", 75, 75, null, null, 84132446, 75309652, 75169050, 85609846, 21956, "ERX1884459", "ERS1343293", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95625, 0.96001, 0.13066, 0.12619, 0.68008, 0.68008, 0.47241, 0.48273, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1368, "ERR1821965", "ERX1884457", "ERS1343291", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 24", "SAMEA4431842", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#71", "DN465656V:G9", "Illumina sequencing of library DN465656V:G9 constructed from sample accession ERS1343291 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTGTCCTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#71.cram", "cram", 365379750.0, 2435865.0, "SC RUN 21115 7#71", "0:75 1:75", "A:96293094;C:85807064;G:85406506;T:97847164;N:25922", 75, 75, null, null, 96293094, 85807064, 85406506, 97847164, 25922, "ERX1884457", "ERS1343291", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95424, 0.95742, 0.12954, 0.12555, 0.67874, 0.68049, 0.47358, 0.47009, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1371, "ERR1821962", "ERX1884454", "ERS1343288", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 4", "SAMEA4431839", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:53Z|INSDC status:public|Submitter Id:894a1370 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:894a1370 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#68", "DN465656V:D9", "Illumina sequencing of library DN465656V:D9 constructed from sample accession ERS1343288 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGCGTGAA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#68.cram", "cram", 331162800.0, 2207752.0, "SC RUN 21115 7#68", "0:75 1:75", "A:85794412;C:79101880;G:78952864;T:87291049;N:22595", 75, 75, null, null, 85794412, 79101880, 78952864, 87291049, 22595, "ERX1884454", "ERS1343288", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9592, 0.96321, 0.13082, 0.12596, 0.68038, 0.68081, 0.47174, 0.46616, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1372, "ERR1821961", "ERX1884453", "ERS1343287", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 3", "SAMEA4431838", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#67", "DN465656V:C9", "Illumina sequencing of library DN465656V:C9 constructed from sample accession ERS1343287 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TACCACCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#67.cram", "cram", 331205700.0, 2208038.0, "SC RUN 21115 7#67", "0:75 1:75", "A:86616306;C:78329975;G:78118373;T:88118620;N:22426", 75, 75, null, null, 86616306, 78329975, 78118373, 88118620, 22426, "ERX1884453", "ERS1343287", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95751, 0.96214, 0.12537, 0.1204, 0.68878, 0.68858, 0.48537, 0.4863, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1373, "ERR1821960", "ERX1884452", "ERS1343286", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 10", "SAMEA4431837", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:51Z|INSDC status:public|Submitter Id:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#66", "DN465656V:B9", "Illumina sequencing of library DN465656V:B9 constructed from sample accession ERS1343286 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGAAGCCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#66.cram", "cram", 360167100.0, 2401114.0, "SC RUN 21115 7#66", "0:75 1:75", "A:93582225;C:85848013;G:85581536;T:95129867;N:25459", 75, 75, null, null, 93582225, 85848013, 85581536, 95129867, 25459, "ERX1884452", "ERS1343286", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95821, 0.96111, 0.11971, 0.11519, 0.68724, 0.6868, 0.48254, 0.48898, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1375, "ERR1821958", "ERX1884450", "ERS1343284", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 16", "SAMEA4431835", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#64", "DN465656V:H8", "Illumina sequencing of library DN465656V:H8 constructed from sample accession ERS1343284 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCTCTTCA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#64.cram", "cram", 336721200.0, 2244808.0, "SC RUN 21115 7#64", "0:75 1:75", "A:86735439;C:80977534;G:80814443;T:88171542;N:22242", 75, 75, null, null, 86735439, 80977534, 80814443, 88171542, 22242, "ERX1884450", "ERS1343284", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96051, 0.96429, 0.12669, 0.12257, 0.69051, 0.69016, 0.46539, 0.46826, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1376, "ERR1821957", "ERX1884449", "ERS1343283", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 6", "SAMEA4431834", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#63", "DN465656V:G8", "Illumina sequencing of library DN465656V:G8 constructed from sample accession ERS1343283 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGTGAAGA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#63.cram", "cram", 369606300.0, 2464042.0, "SC RUN 21115 7#63", "0:75 1:75", "A:95298069;C:88862861;G:88512446;T:96907144;N:25780", 75, 75, null, null, 95298069, 88862861, 88512446, 96907144, 25780, "ERX1884449", "ERS1343283", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96106, 0.96546, 0.11794, 0.11434, 0.69753, 0.69858, 0.48929, 0.48595, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1377, "ERR1821956", "ERX1884448", "ERS1343282", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 21", "SAMEA4431833", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:48Z|INSDC status:public|Submitter Id:8913e840 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8913e840 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#62", "DN465656V:F8", "Illumina sequencing of library DN465656V:F8 constructed from sample accession ERS1343282 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGACGGA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#62.cram", "cram", 318946500.0, 2126310.0, "SC RUN 21115 7#62", "0:75 1:75", "A:83294172;C:75546488;G:75378597;T:84706371;N:20872", 75, 75, null, null, 83294172, 75546488, 75378597, 84706371, 20872, "ERX1884448", "ERS1343282", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95837, 0.96123, 0.13023, 0.12538, 0.6813, 0.68189, 0.47495, 0.47596, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1378, "ERR1821955", "ERX1884447", "ERS1343281", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 21", "SAMEA4431832", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:47Z|INSDC status:public|Submitter Id:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#61", "DN465656V:E8", "Illumina sequencing of library DN465656V:E8 constructed from sample accession ERS1343281 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGCTGATA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#61.cram", "cram", 348135150.0, 2320901.0, "SC RUN 21115 7#61", "0:75 1:75", "A:91572265;C:81811057;G:81549256;T:93177722;N:24850", 75, 75, null, null, 91572265, 81811057, 81549256, 93177722, 24850, "ERX1884447", "ERS1343281", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95568, 0.95891, 0.12837, 0.12239, 0.67754, 0.67716, 0.47787, 0.47701, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1381, "ERR1821952", "ERX1884444", "ERS1343278", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 3", "SAMEA4431829", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#58", "DN465656V:B8", "Illumina sequencing of library DN465656V:B8 constructed from sample accession ERS1343278 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGACAGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#58.cram", "cram", 328086150.0, 2187241.0, "SC RUN 21115 7#58", "0:75 1:75", "A:85080319;C:78326244;G:78231894;T:86424790;N:22903", 75, 75, null, null, 85080319, 78326244, 78231894, 86424790, 22903, "ERX1884444", "ERS1343278", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95723, 0.96059, 0.1249, 0.12125, 0.67438, 0.67363, 0.47214, 0.47571, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1382, "ERR1821951", "ERX1884443", "ERS1343277", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 4", "SAMEA4431828", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#57", "DN465656V:A8", "Illumina sequencing of library DN465656V:A8 constructed from sample accession ERS1343277 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCTACGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#57.cram", "cram", 342888600.0, 2285924.0, "SC RUN 21115 7#57", "0:75 1:75", "A:89589944;C:81204257;G:80998953;T:91071349;N:24097", 75, 75, null, null, 89589944, 81204257, 80998953, 91071349, 24097, "ERX1884443", "ERS1343277", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95568, 0.95951, 0.11882, 0.11586, 0.68071, 0.68083, 0.47558, 0.47205, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1385, "ERR1821948", "ERX1884440", "ERS1343274", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 5", "SAMEA4431825", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#54", "DN465656V:F7", "Illumina sequencing of library DN465656V:F7 constructed from sample accession ERS1343274 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGTTCTCC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#54.cram", "cram", 311123100.0, 2074154.0, "SC RUN 21115 7#54", "0:75 1:75", "A:80977085;C:73956503;G:73826166;T:82342166;N:21180", 75, 75, null, null, 80977085, 73956503, 73826166, 82342166, 21180, "ERX1884440", "ERS1343274", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95727, 0.96199, 0.126, 0.12217, 0.68071, 0.68073, 0.48334, 0.48234, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1388, "ERR1821945", "ERX1884437", "ERS1343271", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 22", "SAMEA4431822", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#51", "DN465656V:C7", "Illumina sequencing of library DN465656V:C7 constructed from sample accession ERS1343271 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTACTCGC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#51.cram", "cram", 340949700.0, 2272998.0, "SC RUN 21115 7#51", "0:75 1:75", "A:88760980;C:81019440;G:80840504;T:90302998;N:25778", 75, 75, null, null, 88760980, 81019440, 80840504, 90302998, 25778, "ERX1884437", "ERS1343271", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95837, 0.96259, 0.11867, 0.11452, 0.69337, 0.69382, 0.48444, 0.4906, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1393, "ERR1821940", "ERX1884432", "ERS1343266", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 18", "SAMEA4431817", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:34Z|INSDC status:public|Submitter Id:8888e650 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#46", "DN465656V:F6", "Illumina sequencing of library DN465656V:F6 constructed from sample accession ERS1343266 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCAGATTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#46.cram", "cram", 330055050.0, 2200367.0, "SC RUN 21115 7#46", "0:75 1:75", "A:85481444;C:78898716;G:78797938;T:86854377;N:22575", 75, 75, null, null, 85481444, 78898716, 78797938, 86854377, 22575, "ERX1884432", "ERS1343266", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95991, 0.96358, 0.11884, 0.11578, 0.68284, 0.68434, 0.47867, 0.48444, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1394, "ERR1821939", "ERX1884431", "ERS1343265", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 17", "SAMEA4431816", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#45", "DN465656V:E6", "Illumina sequencing of library DN465656V:E6 constructed from sample accession ERS1343265 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TATGCCAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#45.cram", "cram", 345969900.0, 2306466.0, "SC RUN 21115 7#45", "0:75 1:75", "A:90927344;C:81421201;G:81202158;T:92396072;N:23125", 75, 75, null, null, 90927344, 81421201, 81202158, 92396072, 23125, "ERX1884431", "ERS1343265", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95523, 0.9594, 0.12879, 0.12441, 0.68371, 0.68245, 0.48658, 0.47772, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1398, "ERR1821935", "ERX1884427", "ERS1343261", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 17", "SAMEA4431812", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#41", "DN465656V:A6", "Illumina sequencing of library DN465656V:A6 constructed from sample accession ERS1343261 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCCAGTCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#41.cram", "cram", 328126350.0, 2187509.0, "SC RUN 21115 7#41", "0:75 1:75", "A:84642756;C:78721382;G:78649568;T:86088943;N:23701", 75, 75, null, null, 84642756, 78721382, 78649568, 86088943, 23701, "ERX1884427", "ERS1343261", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95948, 0.9638, 0.13772, 0.13476, 0.67886, 0.67923, 0.4859, 0.47157, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1403, "ERR1821930", "ERX1884422", "ERS1343256", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 14", "SAMEA4431807", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#36", "DN465656V:D5", "Illumina sequencing of library DN465656V:D5 constructed from sample accession ERS1343256 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGAACTGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#36.cram", "cram", 339549600.0, 2263664.0, "SC RUN 21115 7#36", "0:75 1:75", "A:86935886;C:82184115;G:82019061;T:88386477;N:24061", 75, 75, null, null, 86935886, 82184115, 82019061, 88386477, 24061, "ERX1884422", "ERS1343256", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9625, 0.96656, 0.10814, 0.10457, 0.69077, 0.69104, 0.48142, 0.47703, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1405, "ERR1821928", "ERX1884420", "ERS1343254", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 6", "SAMEA4431805", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#34", "DN465656V:B5", "Illumina sequencing of library DN465656V:B5 constructed from sample accession ERS1343254 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAACGCTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#34.cram", "cram", 340225350.0, 2268169.0, "SC RUN 21115 7#34", "0:75 1:75", "A:89140873;C:80359815;G:80091727;T:90609762;N:23173", 75, 75, null, null, 89140873, 80359815, 80091727, 90609762, 23173, "ERX1884420", "ERS1343254", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95688, 0.96041, 0.11971, 0.11541, 0.68674, 0.68718, 0.47042, 0.47524, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1408, "ERR1821925", "ERX1884417", "ERS1343251", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 19", "SAMEA4431802", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#31", "DN465656V:G4", "Illumina sequencing of library DN465656V:G4 constructed from sample accession ERS1343251 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGTCTTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#31.cram", "cram", 338695950.0, 2257973.0, "SC RUN 21115 7#31", "0:75 1:75", "A:88637707;C:80089055;G:79880255;T:90066042;N:22891", 75, 75, null, null, 88637707, 80089055, 79880255, 90066042, 22891, "ERX1884417", "ERS1343251", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95645, 0.96094, 0.13554, 0.1313, 0.67907, 0.68008, 0.4806, 0.48064, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1410, "ERR1821923", "ERX1884415", "ERS1343249", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 1", "SAMEA4431800", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#29", "DN465656V:E4", "Illumina sequencing of library DN465656V:E4 constructed from sample accession ERS1343249 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCCTCAAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#29.cram", "cram", 366322350.0, 2442149.0, "SC RUN 21115 7#29", "0:75 1:75", "A:94017056;C:88415257;G:88329033;T:95536586;N:24418", 75, 75, null, null, 94017056, 88415257, 88329033, 95536586, 24418, "ERX1884415", "ERS1343249", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95967, 0.96398, 0.12878, 0.12562, 0.6826, 0.68227, 0.47576, 0.4828, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1411, "ERR1821922", "ERX1884414", "ERS1343248", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 9", "SAMEA4431799", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#28", "DN465656V:D4", "Illumina sequencing of library DN465656V:D4 constructed from sample accession ERS1343248 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TACAGGAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#28.cram", "cram", 364518600.0, 2430124.0, "SC RUN 21115 7#28", "0:75 1:75", "A:95092411;C:86578092;G:86167378;T:96656365;N:24354", 75, 75, null, null, 95092411, 86578092, 86167378, 96656365, 24354, "ERX1884414", "ERS1343248", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95832, 0.96248, 0.12173, 0.1165, 0.68927, 0.69014, 0.48572, 0.48471, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1412, "ERR1821921", "ERX1884413", "ERS1343247", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 13", "SAMEA4431798", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#27", "DN465656V:C4", "Illumina sequencing of library DN465656V:C4 constructed from sample accession ERS1343247 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGTGACT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#27.cram", "cram", 354481650.0, 2363211.0, "SC RUN 21115 7#27", "0:75 1:75", "A:91732533;C:84785566;G:84645818;T:93293392;N:24341", 75, 75, null, null, 91732533, 84785566, 84645818, 93293392, 24341, "ERX1884413", "ERS1343247", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96029, 0.96432, 0.1188, 0.11522, 0.68047, 0.6818, 0.4676, 0.46541, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1413, "ERR1821920", "ERX1884412", "ERS1343246", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 15", "SAMEA4431797", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#26", "DN465656V:B4", "Illumina sequencing of library DN465656V:B4 constructed from sample accession ERS1343246 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTCCTGCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#26.cram", "cram", 331984500.0, 2213230.0, "SC RUN 21115 7#26", "0:75 1:75", "A:86348725;C:78998309;G:78858826;T:87756035;N:22605", 75, 75, null, null, 86348725, 78998309, 78858826, 87756035, 22605, "ERX1884412", "ERS1343246", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95887, 0.96214, 0.11962, 0.11489, 0.6815, 0.68148, 0.47571, 0.47326, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1414, "ERR1821919", "ERX1884411", "ERS1343245", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 20", "SAMEA4431796", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#25", "DN465656V:A4", "Illumina sequencing of library DN465656V:A4 constructed from sample accession ERS1343245 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGCGATCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#25.cram", "cram", 320720700.0, 2138138.0, "SC RUN 21115 7#25", "0:75 1:75", "A:84088856;C:75649711;G:75458666;T:85500924;N:22543", 75, 75, null, null, 84088856, 75649711, 75458666, 85500924, 22543, "ERX1884411", "ERS1343245", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95593, 0.95888, 0.12916, 0.12423, 0.68448, 0.68294, 0.48286, 0.48538, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1415, "ERR1821918", "ERX1884410", "ERS1343244", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 22", "SAMEA4431795", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#24", "DN465656V:H3", "Illumina sequencing of library DN465656V:H3 constructed from sample accession ERS1343244 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. 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This submission includes reads tagged with the sequence TCTCGGTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#14.cram", "cram", 299481000.0, 1996540.0, "SC RUN 21115 7#14", "0:75 1:75", "A:77178332;C:71998773;G:71843576;T:78438313;N:22006", 75, 75, null, null, 77178332, 71998773, 71843576, 78438313, 22006, "ERX1884400", "ERS1343234", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96076, 0.96422, 0.12622, 0.12165, 0.68803, 0.68891, 0.47017, 0.47616, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1428, "ERR1821905", "ERX1884397", "ERS1343231", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 14", "SAMEA4431782", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431782|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:05Z|INSDC status:public|Submitter Id:877182e0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TAGCTTGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#10.cram", "cram", 341330550.0, 2275537.0, "SC RUN 21115 7#10", "0:75 1:75", "A:88881827;C:81100577;G:80952610;T:90372489;N:23047", 75, 75, null, null, 88881827, 81100577, 80952610, 90372489, 23047, "ERX1884396", "ERS1343230", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95807, 0.9608, 0.13472, 0.13072, 0.67943, 0.68164, 0.47486, 0.47528, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1434, "ERR1821899", "ERX1884391", "ERS1343225", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 23", "SAMEA4431776", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:41:59Z|INSDC status:public|Submitter Id:87436e00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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