{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where devstage_curation = \"Pharyngula\" and technology = \"detct\"", "rows": [[14967, "ERR273885", "ERX248161", "ERS195621", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886529", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886529|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 6. 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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 8#4", "6469773", "Illumina sequencing of library 6469773  constructed from sample accession ERS195619 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 8.  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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 8#3", "6469772", "Illumina sequencing of library 6469772  constructed from sample accession ERS195618 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 8.  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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 8#2", "6469771", "Illumina sequencing of library 6469771  constructed from sample accession ERS195617 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 8.  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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 8#1", "6469770", "Illumina sequencing of library 6469770  constructed from sample accession ERS195616 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 8.  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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 7#6", "6469775", "Illumina sequencing of library 6469775  constructed from sample accession ERS195621 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 7.  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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 7#5", "6469774", "Illumina sequencing of library 6469774  constructed from sample accession ERS195620 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 7.  This submission includes reads tagged with the sequence ACAGTG.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16", "9217_7#5.bam", "bam", 1719163350.0, 11461089.0, "SC RUN 9217 7#5", null, null, null, null, null, null, null, null, null, null, null, "ERX248142", "ERS195620", "ERA212581", "SC", "Wellcome Sanger Institute", 2, 0.91889, 0.9011, 0.13666, 0.13543, 0.70926, 0.71094, 0.48021, 0.47945, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [14987, "ERR273865", "ERX248141", "ERS195619", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886542", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886542|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 7#4", "6469773", "Illumina sequencing of library 6469773  constructed from sample accession ERS195619 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 7.  This submission includes reads tagged with the sequence TGACCA.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16", "9217_7#4.bam", "bam", 1626190500.0, 10841270.0, "SC RUN 9217 7#4", "0:75 1:75", "A:454015011;C:364710766;G:361940574;T:444981305;N:542844", 75, 75, null, null, 454015011, 364710766, 361940574, 444981305, 542844, "ERX248141", "ERS195619", "ERA212581", "SC", "Wellcome Sanger Institute", 2, 0.93154, 0.93081, 0.12773, 0.12841, 0.70983, 0.71106, 0.49848, 0.50577, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [14988, "ERR273864", "ERX248140", "ERS195618", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886540", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886540|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 7#3", "6469772", "Illumina sequencing of library 6469772  constructed from sample accession ERS195618 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 7.  This submission includes reads tagged with the sequence TTAGGC.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16", "9217_7#3.bam", "bam", 1566205500.0, 10441370.0, "SC RUN 9217 7#3", "0:75 1:75", "A:439799487;C:348771359;G:346303759;T:430816021;N:514874", 75, 75, null, null, 439799487, 348771359, 346303759, 430816021, 514874, "ERX248140", "ERS195618", "ERA212581", "SC", "Wellcome Sanger Institute", 2, 0.93666, 0.93764, 0.12131, 0.12227, 0.70638, 0.70946, 0.48533, 0.48632, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [14989, "ERR273863", "ERX248139", "ERS195617", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886527", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886527|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 7#2", "6469771", "Illumina sequencing of library 6469771  constructed from sample accession ERS195617 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 7.  This submission includes reads tagged with the sequence CGATGT.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16", "9217_7#2.bam", "bam", 1172040000.0, 7813600.0, "SC RUN 9217 7#2", "0:75 1:75", "A:332593503;C:258091884;G:255303483;T:325658114;N:393016", 75, 75, null, null, 332593503, 258091884, 255303483, 325658114, 393016, "ERX248139", "ERS195617", "ERA212581", "SC", "Wellcome Sanger Institute", 2, 0.93554, 0.93518, 0.12803, 0.12845, 0.70952, 0.71167, 0.49395, 0.49534, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [14990, "ERR273862", "ERX248138", "ERS195616", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886544", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886544|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9217 7#1", "6469770", "Illumina sequencing of library 6469770  constructed from sample accession ERS195616 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9217 7.  This submission includes reads tagged with the sequence ATCACG.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16", "9217_7#1.bam", "bam", 1116555150.0, 7443701.0, "SC RUN 9217 7#1", null, null, null, null, null, null, null, null, null, null, null, "ERX248138", "ERS195616", "ERA212581", "SC", "Wellcome Sanger Institute", 2, 0.91973, 0.90261, 0.13664, 0.13478, 0.70703, 0.7079, 0.47179, 0.47238, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [15003, "ERR271384", "ERX245611", "ERS195621", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886529", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886529|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9201 6#6", "6469775", "Illumina sequencing of library 6469775  constructed from sample accession ERS195621 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9201 6.  This submission includes reads tagged with the sequence GCCAAT.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16", "9201_6#6.bam", "bam", 1393473450.0, 9289823.0, "SC RUN 9201 6#6", "0:75 1:75", "A:389084610;C:312060787;G:310077460;T:381555841;N:694752", 75, 75, null, null, 389084610, 312060787, 310077460, 381555841, 694752, "ERX245611", "ERS195621", "ERA211703", "SC", "Wellcome Sanger Institute", 2, 0.93911, 0.93746, 0.1301, 0.13135, 0.70686, 0.70889, 0.49764, 0.48868, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [15004, "ERR271383", "ERX245610", "ERS195620", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886534", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886534|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9201 6#5", "6469774", "Illumina sequencing of library 6469774  constructed from sample accession ERS195620 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9201 6.  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More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9201 6#4", "6469773", "Illumina sequencing of library 6469773  constructed from sample accession ERS195619 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9201 6.  This submission includes reads tagged with the sequence TGACCA.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16", "9201_6#4.bam", "bam", 1326165450.0, 8841103.0, "SC RUN 9201 6#4", "0:75 1:75", "A:369763686;C:297520280;G:295209473;T:362998667;N:673344", 75, 75, null, null, 369763686, 297520280, 295209473, 362998667, 673344, "ERX245609", "ERS195619", "ERA211703", "SC", "Wellcome Sanger Institute", 2, 0.9308, 0.92975, 0.12931, 0.129, 0.71153, 0.71234, 0.50884, 0.50645, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [15006, "ERR271381", "ERX245608", "ERS195618", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886540", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886540|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9201 6#3", "6469772", "Illumina sequencing of library 6469772  constructed from sample accession ERS195618 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9201 6.  This submission includes reads tagged with the sequence TTAGGC.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16", "9201_6#3.bam", "bam", 1277555850.0, 8517039.0, "SC RUN 9201 6#3", "0:75 1:75", "A:358197532;C:284724634;G:282531631;T:351464208;N:637845", 75, 75, null, null, 358197532, 284724634, 282531631, 351464208, 637845, "ERX245608", "ERS195618", "ERA211703", "SC", "Wellcome Sanger Institute", 2, 0.93733, 0.93753, 0.12231, 0.12246, 0.70615, 0.70853, 0.48197, 0.48793, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [15007, "ERR271380", "ERX245607", "ERS195617", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886527", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886527|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9201 6#2", "6469771", "Illumina sequencing of library 6469771  constructed from sample accession ERS195617 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9201 6.  This submission includes reads tagged with the sequence CGATGT.", "Illumina cDNA protocol", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "ERP001991", "Illumina HiSeq 2000 paired end sequencing", "ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16", "9201_6#2.bam", "bam", 954172500.0, 6361150.0, "SC RUN 9201 6#2", "0:75 1:75", "A:270328287;C:210265769;G:207981282;T:265112454;N:484708", 75, 75, null, null, 270328287, 210265769, 207981282, 265112454, 484708, "ERX245607", "ERS195617", "ERA211703", "SC", "Wellcome Sanger Institute", 2, 0.93444, 0.9332, 0.12772, 0.12818, 0.71003, 0.71256, 0.49687, 0.49245, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "bulk", "detct", null, "United Kingdom", "2013-05-07", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"], [15008, "ERR271379", "ERX245606", "ERS195616", "ERP001991", "PRJEB673", "RNAseq vs DeTCT comparison", "RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445", "Transcriptome Analysis", "Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling", null, null, null, null, "SAMEA1886544", "SC", "ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15   ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886544|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|scientific name:Danio rerio|strain:mixed", null, null, null, null, null, null, null, null, "1", "SC EXP 9201 6#1", "6469770", "Illumina sequencing of library 6469770  constructed from sample accession ERS195616 for study accession ERP001991.  This is part of an Illumina multiplexed sequencing run 9201 6.  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