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Authors: Jiang  Weinstein  Penland  White  Fish  and Quake.", null, "pubmed:21393572", "Immunoglobulin heavy chain cDNA from 2 wpf WIK zebrafish Danio rerio  leading with MID barcode ATCAGACACG", "4433 2WA", "4433 2WA", null, null, null, null, null, null, null, null, null, null, "1", "4433 2WA", "Zebrafish WIK", "Standard Roche 454 GS Titanium shotgun library protocol was followed.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "PCR", "SINGLE", "LS454", "454 GS FLX Titanium", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP005640", null, null, null, null, 41165356.0, 128188.0, "4433 2WA", "0:4 1:317.13", null, 4, 317, null, null, null, null, null, null, null, "SRX041551", "SRS172401", "SRA029829", "Stanford University|Quake", "Stanford University", 1, 0.16018, null, 0.02829, null, 0.99847, null, 0.02343, null, 452, null, "B", null, "usable mapping rate", "legacy", "early", "unknown", "random_priming", "unknown", "bulk", "other_seq", "454", null, "United States", "2011-04-07", "Larval", "Larval", "BCR TCR repertoire", "Hematopoietic System"], [68309, "SRR099337", "SRX041550", "SRS172400", "SRP005640", "PRJNA79973", "Zebrafish Development", "4432-2WA", "Other", "Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang  Weinstein  Penland  White  Fish  and Quake.", null, "pubmed:21393572", "Immunoglobulin heavy chain cDNA from 2 wpf WIK zebrafish Danio rerio  leading with MID barcode AGCACTGTAG", "4432 2WD", "4432 2WD", null, null, null, null, null, null, null, null, null, null, "1", "4432 2WD", "Zebrafish WIK", "Standard Roche 454 GS Titanium shotgun library protocol was followed.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "PCR", "SINGLE", "LS454", "454 GS FLX Titanium", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP005640", null, null, null, null, 34384017.0, 109589.0, "4432 2WD", "0:4 1:309.75", null, 4, 309, null, null, null, null, null, null, null, "SRX041550", "SRS172400", "SRA029829", "Stanford University|Quake", "Stanford University", 1, 0.1533, null, 0.02541, null, 0.99896, null, 0.00428, null, 254, null, "B", null, "usable mapping rate", "legacy", "early", "unknown", "random_priming", "unknown", "bulk", "other_seq", "454", null, "United States", "2011-04-07", "Larval", "Larval", "BCR TCR repertoire", "Hematopoietic System"], [68310, "SRR099336", "SRX041549", "SRS172399", "SRP005640", "PRJNA79973", "Zebrafish Development", "4432-2WA", "Other", "Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang  Weinstein  Penland  White  Fish  and Quake.", null, "pubmed:21393572", "Immunoglobulin heavy chain cDNA from 2 wpf WIK zebrafish Danio rerio  leading with MID barcode AGACGCACTC", "4432 2WC", "4432 2WC", null, null, null, null, null, null, null, null, null, null, "1", "4432 2WC", "Zebrafish WIK", "Standard Roche 454 GS Titanium shotgun library protocol was followed.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "PCR", "SINGLE", "LS454", "454 GS FLX Titanium", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP005640", null, null, null, null, 71040021.0, 233525.0, "4432 2WC", "0:4 1:300.21", null, 4, 300, null, null, null, null, null, null, null, "SRX041549", "SRS172399", "SRA029829", "Stanford University|Quake", "Stanford University", 1, 0.16787, null, 0.03447, null, 0.9978, null, 0.01646, null, 360, null, "B", null, "usable mapping rate", "legacy", "early", "unknown", "random_priming", "unknown", "bulk", "other_seq", "454", null, "United States", "2011-04-07", "Larval", "Larval", "BCR TCR repertoire", "Hematopoietic System"], [68311, "SRR099335", "SRX041548", "SRS172345", "SRP005640", "PRJNA79973", "Zebrafish Development", "4432-2WA", "Other", "Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang  Weinstein  Penland  White  Fish  and Quake.", null, "pubmed:21393572", "Immunoglobulin heavy chain cDNA from 2 wpf WIK zebrafish Danio rerio  leading with MID barcode ACGCTCGACA", "4432 2WB", "4432 2WB", null, null, null, null, null, null, null, null, null, null, "1", "4432 2WB", "Zebrafish WIK", "Standard Roche 454 GS Titanium shotgun library protocol was followed.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "PCR", "SINGLE", "LS454", "454 GS FLX Titanium", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP005640", null, null, null, null, 98153866.0, 302470.0, "4432 2WB", "0:4 1:320.51", null, 4, 320, null, null, null, null, null, null, null, "SRX041548", "SRS172345", "SRA029829", "Stanford University|Quake", "Stanford University", 1, 0.15713, null, 0.047, null, 0.99774, null, 0.02379, null, 137, null, "B", null, "usable mapping rate", "legacy", "early", "unknown", "random_priming", "unknown", "bulk", "other_seq", "454", null, "United States", "2011-04-07", "Larval", "Larval", "BCR TCR repertoire", "Hematopoietic System"], [68312, "SRR099334", "SRX041547", "SRS172117", "SRP005640", "PRJNA79973", "Zebrafish Development", "4432-2WA", "Other", "Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang  Weinstein  Penland  White  Fish  and Quake.", null, "pubmed:21393572", "Immunoglobulin heavy chain cDNA from 2 wpf WIK zebrafish Danio rerio  leading with MID barcode ACGAGTGCGT", "4432 2WA", "4432 2WA", null, null, null, null, null, null, null, null, null, null, "1", "4432 2WA", "Zebrafish WIK", "Standard Roche 454 GS Titanium shotgun library protocol was followed.", null, null, "AMPLICON", "TRANSCRIPTOMIC", "PCR", "SINGLE", "LS454", "454 GS FLX Titanium", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP005640", null, null, null, null, 91079672.0, 319475.0, "4432 2WA", "0:4 1:281.09", null, 4, 281, null, null, null, null, null, null, null, "SRX041547", "SRS172117", "SRA029829", "Stanford University|Quake", "Stanford University", 1, 0.25569, null, 0.04646, null, 0.99902, null, 0.00137, null, 88, null, "B", null, "usable mapping rate", "legacy", "early", "unknown", "random_priming", "unknown", "bulk", "other_seq", "454", null, "United States", "2011-04-07", "Larval", "Larval", "BCR TCR repertoire", "Hematopoietic System"]], "truncated": false, "filtered_table_rows_count": 8, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], 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[seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"devstage_curation\" = :p0 and \"tissue_curation\" = :p1 order by rowid limit 101", "params": {"p0": "Larval", "p1": "BCR TCR repertoire"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, 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"/metadata/run_metadata.json?devstage_curation=Larval&tissue_curation=BCR+TCR+repertoire", "results": [{"value": "Larval", "label": "Larval", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?tissue_curation=BCR+TCR+repertoire", "selected": true}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Larval&tissue_curation=BCR+TCR+repertoire", "results": [{"value": "Hematopoietic System", "label": "Hematopoietic System", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Larval&tissue_curation=BCR+TCR+repertoire&tissue_curation_coarse=Hematopoietic+System", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": 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