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The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.", null, null, null, "Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 2", "SAMD00057656", null, "sample name:Zebrafish 156A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 2", null, null, null, null, null, null, null, null, "Illumina HiSeq 1500 paired end sequencing of SAMD00057656", "DRX061077", "1", "1", "Quartz seq for low amount total RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 1500", "2020Application ReadForward11Application ReadReverse102", "DRP003275", "Illumina HiSeq 1500 paired end sequencing of SAMD00057656", null, null, null, 2054289096.0, 10169748.0, "DRR067133", "0:101 1:101", "A:563764176;C:464768863;G:497506420;T:528187503;N:62134", 101, 101, null, null, 563764176, 464768863, 497506420, 528187503, 62134, "DRX061077", "DRS034131", "DRA004955", "RIKEN_CLST_DBFDI|Phyloinformatics Unit", "RIKEN CLST", 2, 0.69311, 0.6968, 0.12309, 0.12389, 0.76428, 0.76676, 0.48379, 0.48227, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_plate", "quartzseq", null, "Japan", "2016-09-19", "Larval", "Larval", "Brain", "Nervous System"], [167, "DRR067132", "DRX061076", "DRS034130", "DRP003275", "PRJDB4941", "Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum", "DRP003275", "Other", "An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.", null, null, null, "Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 1", "SAMD00057655", null, "sample name:Zebrafish 156A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 1", null, null, null, null, null, null, null, null, "Illumina HiSeq 1500 paired end sequencing of SAMD00057655", "DRX061076", "1", "1", "Quartz seq for low amount total RNA", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 1500", "2020Application ReadForward11Application ReadReverse102", "DRP003275", "Illumina HiSeq 1500 paired end sequencing of SAMD00057655", null, null, null, 2152665722.0, 10656761.0, "DRR067132", "0:101 1:101", "A:585252781;C:495382257;G:522677749;T:549287359;N:65576", 101, 101, null, null, 585252781, 495382257, 522677749, 549287359, 65576, "DRX061076", "DRS034130", "DRA004955", "RIKEN_CLST_DBFDI|Phyloinformatics Unit", "RIKEN CLST", 2, 0.67771, 0.68253, 0.12949, 0.1303, 0.77216, 0.77542, 0.4951, 0.49452, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_plate", "quartzseq", null, "Japan", "2016-09-19", "Larval", "Larval", "Brain", "Nervous System"], [168, "DRR075402", "DRX069316", "DRS075497", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this we established the novel gut tumor model in zebrafish Danio rerio. This model develops tumor at an early stage of juvenile development when zebrafish larvae are small <4mm enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver the gut/gut tumor and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The liver of tumor fish 7dpf", "Tumor liver", "SAMD00065416", null, "sample name:6 Tumor liver 150701 Hiseq3A l3 022|tissue type:Liver", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065416", "DRX069316", "Tumor liver", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "360Application ReadForward1", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065416", null, null, null, 1091167236.0, 30310201.0, "DRR075402", "0:36", "A:272216839;C:257523620;G:259746158;T:301642763;N:37856", 36, null, null, null, 272216839, 257523620, 259746158, 301642763, 37856, "DRX069316", "DRS075497", "DRA005199", "ATR|The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", "The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.90443, null, 0.08935, null, 0.71863, null, 0.51145, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Multi-tissue", "Multi-system"], [169, "DRR075401", "DRX069315", "DRS075496", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this we established the novel gut tumor model in zebrafish Danio rerio. This model develops tumor at an early stage of juvenile development when zebrafish larvae are small <4mm enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver the gut/gut tumor and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The gut of tumor fish 7dpf", "Tumor gut", "SAMD00065415", null, "sample name:5 Tumor gut 150701 Hiseq3A l3 021|tissue type:Gut", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065415", "DRX069315", "Tumor gut", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "360Application ReadForward1", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065415", null, null, null, 1423792872.0, 39549802.0, "DRR075401", "0:36", "A:342328685;C:346616167;G:341519547;T:393278536;N:49937", 36, null, null, null, 342328685, 346616167, 341519547, 393278536, 49937, "DRX069315", "DRS075496", "DRA005199", "ATR|The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", "The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.91303, null, 0.0869, null, 0.70494, null, 0.44332, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Multi-tissue", "Multi-system"], [170, "DRR075400", "DRX069314", "DRS075495", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this we established the novel gut tumor model in zebrafish Danio rerio. This model develops tumor at an early stage of juvenile development when zebrafish larvae are small <4mm enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver the gut/gut tumor and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The remaining part of body of tumor fish 7dpf", "Tumor body", "SAMD00065414", null, "sample name:4 Tumor body 150701 Hiseq3A l3 020|tissue type:Body", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065414", "DRX069314", "Tumor body", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "360Application ReadForward1", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065414", null, null, null, 1168514964.0, 32458749.0, "DRR075400", "0:36", "A:286579925;C:275496498;G:278133055;T:328265078;N:40408", 36, null, null, null, 286579925, 275496498, 278133055, 328265078, 40408, "DRX069314", "DRS075495", "DRA005199", "ATR|The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", "The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.89927, null, 0.15051, null, 0.66714, null, 0.47579, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Multi-tissue", "Multi-system"], [171, "DRR075399", "DRX069313", "DRS075494", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this we established the novel gut tumor model in zebrafish Danio rerio. This model develops tumor at an early stage of juvenile development when zebrafish larvae are small <4mm enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver the gut/gut tumor and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The liver of control fish 7dpf", "Control liver", "SAMD00065413", null, "sample name:3 control liver 150701 Hiseq3A l3 019|tissue type:Liver", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065413", "DRX069313", "Control liver", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "360Application ReadForward1", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065413", null, null, null, 951579036.0, 26432751.0, "DRR075399", "0:36", "A:231570583;C:228182815;G:227223430;T:264569214;N:32994", 36, null, null, null, 231570583, 228182815, 227223430, 264569214, 32994, "DRX069313", "DRS075494", "DRA005199", "ATR|The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", "The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.8903, null, 0.08667, null, 0.7236, null, 0.51557, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Liver", "Liver and Biliary System"], [172, "DRR075398", "DRX069312", "DRS075493", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this we established the novel gut tumor model in zebrafish Danio rerio. This model develops tumor at an early stage of juvenile development when zebrafish larvae are small <4mm enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver the gut/gut tumor and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The gut of control fish 7dpf", "Control gut", "SAMD00065412", null, "sample name:2 control gut 150701 Hiseq3A l3 018|tissue type:Gut", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065412", "DRX069312", "Control gut", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "360Application ReadForward1", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065412", null, null, null, 1008093492.0, 28002597.0, "DRR075398", "0:36", "A:230431417;C:251640901;G:244174255;T:281811580;N:35339", 36, null, null, null, 230431417, 251640901, 244174255, 281811580, 35339, "DRX069312", "DRS075493", "DRA005199", "ATR|The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", "The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.9173, null, 0.07181, null, 0.72017, null, 0.45193, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Gut", "Digestive System"], [173, "DRR075397", "DRX069311", "DRS075492", "DRP004473", "PRJDB5226", "Effects of local gut tumor on whole organismal gene expressions in zebrafish", "DRP004473", "Other", "How tumors affects whole organismal physiology remains largely unknown. To address this we established the novel gut tumor model in zebrafish Danio rerio. This model develops tumor at an early stage of juvenile development when zebrafish larvae are small <4mm enabling us to perform whole organismal RNA seq experiments. Control or tumor bearing zebrafish were dissected into the three parts under microscope: the liver the gut/gut tumor and others. Tissues from >10 individuals were pooled and RNA extracted. Analyses on these RNA seq samples identified a set of host genes affected by the gut tumor contributing to discovering novel tumor organ interactions and their mediators in zebrafish.", null, null, "The remaining part of body of control fish 7dpf", "Control body", "SAMD00065411", null, "sample name:1 control body 150701 Hiseq3A l3 017|tissue type:Body", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 sequencing of SAMD00065411", "DRX069311", "Control body", "1", "Agilent SureSelect Strand Specific RNA Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", "360Application ReadForward1", "DRP004473", "Illumina HiSeq 2500 sequencing of SAMD00065411", null, null, null, 2653100352.0, 73697232.0, "DRR075397", "0:36", "A:656791658;C:620507513;G:625038612;T:750671135;N:91434", 36, null, null, null, 656791658, 620507513, 625038612, 750671135, 91434, "DRX069311", "DRS075492", "DRA005199", "ATR|The Thomas N. 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Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International", 1, 0.89666, null, 0.15749, null, 0.67048, null, 0.47755, null, 36, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "Japan", "2018-09-19", "Larval", "Larval", "Trunk", "Surface Structure"], [294, "DRR224548", "DRX214833", "DRS236356", "DRP008458", "PRJDB9741", "RNA seq for developing pectoral fin in zebrafish", "DRP008458", "Other", "From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.", null, null, null, "pectoral fin from RIKEN Wild type zebrafish at 28dpf C", "SAMD00222579", null, "sample name:28dpf C", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00222579", "DRX214833", "28dpf C", "1", "Illumina TruSeq Stranded mRNA Library Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "2000Application ReadForward11Application ReadReverse101", "DRP008458", "Illumina NovaSeq 6000 paired end sequencing of SAMD00222579", null, null, null, 16269568600.0, 81347843.0, "DRR224548", "0:100 1:100", "A:3978004953;C:4160626131;G:4174223034;T:3956539398;N:175084", 100, 100, null, null, 3978004953, 4160626131, 4174223034, 3956539398, 175084, "DRX214833", "DRS236356", "DRA010086", "TOHOKUGL|Laboratory of organ morphogenesis", "Graduate School of Life Sciences, Tohoku University", 2, 0.9633, 0.95842, 0.0474, 0.04564, 0.72184, 0.72253, 0.47871, 0.46471, 100, 100, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2022-04-21", "Larval", "Larval", "Fin", "Surface Structure"], [295, "DRR224547", "DRX214832", "DRS236355", "DRP008458", "PRJDB9741", "RNA seq for developing pectoral fin in zebrafish", "DRP008458", "Other", "From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.", null, null, null, "pectoral fin from RIKEN Wild type zebrafish at 28dpf B", "SAMD00222578", null, "sample name:28dpf B", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00222578", "DRX214832", "28dpf B", "1", "Illumina TruSeq Stranded mRNA Library Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "2000Application ReadForward11Application ReadReverse101", "DRP008458", "Illumina NovaSeq 6000 paired end sequencing of SAMD00222578", null, null, null, 19970979800.0, 99854899.0, "DRR224547", "0:100 1:100", "A:5064043525;C:4909415172;G:5303813974;T:4693498507;N:208622", 100, 100, null, null, 5064043525, 4909415172, 5303813974, 4693498507, 208622, "DRX214832", "DRS236355", "DRA010086", "TOHOKUGL|Laboratory of organ morphogenesis", "Graduate School of Life Sciences, Tohoku University", 2, 0.95486, 0.94587, 0.05718, 0.05404, 0.73746, 0.74754, 0.51956, 0.47088, 100, 100, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2022-04-21", "Larval", "Larval", "Fin", "Surface Structure"], [296, "DRR224546", "DRX214831", "DRS236354", "DRP008458", "PRJDB9741", "RNA seq for developing pectoral fin in zebrafish", "DRP008458", "Other", "From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.", null, null, null, "pectoral fin from RIKEN Wild type zebrafish at 28dpf A", "SAMD00222577", null, "sample name:28dpf A", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of 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