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12|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA seq of zebrafish larvae", "L6H 3", "L6H 3", "miRNA  seq", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP512097", null, null, "L6H_3.fq.gz", "fastq", 551181072.0, 10807472.0, "L6H 3.fq.gz", "0:51", "A:126813056;C:141881980;G:147676363;T:134665008;N:144665", 51, null, null, null, 126813056, 141881980, 147676363, 134665008, 144665, "SRX24820189", "SRS21534291", "SRA1890590", "Lanzhou University|College of Life Science", "Lanzhou University", 1, 0.09301, null, 0.01507, null, 0.99042, null, 0.54323, null, 51, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-06-06", "Larval", "Larval", "Trunk", "Surface Structure"], [32550, "SRR29303129", "SRX24820188", "SRS21534290", "SRP512097", "PRJNA1120592", "Light induce Zebrafish larvae", "PRJNA1120592", "Other", "Light induce Zebrafish larvae  miRNA", null, null, null, null, "L6H 2 miRNA", null, "breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 11|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA seq of zebrafish larvae", "L6H 2", "L6H 2", "miRNA  seq", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP512097", null, null, "L6H_2.fq.gz", "fastq", 571762632.0, 11211032.0, "L6H 2.fq.gz", "0:51", "A:138521192;C:148068464;G:150615597;T:134408189;N:149190", 51, null, null, null, 138521192, 148068464, 150615597, 134408189, 149190, "SRX24820188", "SRS21534290", "SRA1890590", "Lanzhou University|College of Life Science", "Lanzhou University", 1, 0.01523, null, 0.00336, null, 0.9933, null, 0.57685, null, 51, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-06-06", "Larval", "Larval", "Trunk", "Surface Structure"], [32551, "SRR29303130", "SRX24820187", "SRS21534289", "SRP512097", "PRJNA1120592", "Light induce Zebrafish larvae", "PRJNA1120592", "Other", "Light induce Zebrafish larvae  miRNA", null, null, null, null, "DD 2 miRNA", null, "breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 02|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA seq of zebrafish larvae", "DD 2", "DD 2", "miRNA  seq", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP512097", null, null, "DD_2.fq.gz", "fastq", 706940937.0, 13861587.0, "DD 2.fq.gz", "0:51", "A:162899595;C:189209828;G:187422113;T:167222837;N:186564", 51, null, null, null, 162899595, 189209828, 187422113, 167222837, 186564, "SRX24820187", "SRS21534289", "SRA1890590", "Lanzhou University|College of Life Science", "Lanzhou University", 1, 0.02266, null, 0.00566, null, 0.99334, null, 0.56959, null, 51, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-06-06", "Larval", "Larval", "Trunk", "Surface Structure"], [32552, "SRR29303131", "SRX24820186", "SRS21534288", "SRP512097", "PRJNA1120592", "Light induce Zebrafish larvae", "PRJNA1120592", "Other", "Light induce Zebrafish larvae  miRNA", null, null, null, null, "DD 1 miRNA", null, "breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 01|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA seq of zebrafish larvae", "DD 1", "DD 1", "miRNA  seq", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 3000", null, "SRP512097", null, null, "DD_1.fq.gz", "fastq", 540332862.0, 10594762.0, "DD 1.fq.gz", "0:51", "A:127336994;C:143901414;G:142437491;T:126515166;N:141797", 51, null, null, null, 127336994, 143901414, 142437491, 126515166, 141797, "SRX24820186", "SRS21534288", "SRA1890590", "Lanzhou University|College of Life Science", "Lanzhou University", 1, 0.01404, null, 0.00313, null, 0.99484, null, 0.56573, null, 51, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-06-06", "Larval", "Larval", "Trunk", "Surface Structure"], [41309, "SRR4242454", "SRX2163334", "SRS1691357", "SRP089876", "PRJNA341782", "Danio rerio Phenotype or Genotype", "PRJNA341782", "Other", "Based on the differential comparison of transcriptomes of Homo   hetero zygote Het and wild type Wt  in vivo protein trap mutagenesis system  we have produced series of expression codex of the zebrafish. Here   we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.", null, null, null, null, "ho 160", null, "strain:TU|isolate:homozygous|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences  University of Toronto  Toronto  Canada. Xiao yan WEN|birth date:2015 05 01|genotype:homozygous|phenotype:small head  abnormal vascular system|treatment:in vivo protein trap mutagenesis|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "1", "ho 160", "ho 160", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP089876", null, null, "HO.fq.gz", "fastq", 568688414.0, 11605886.0, "HO.fq.gz", "0:49", "A:146833011;C:136838940;G:142141532;T:142831489;N:43442", 49, null, null, null, 146833011, 136838940, 142141532, 142831489, 43442, "SRX2163334", "SRS1691357", "SRA471230", "Guangdong Ocean University|Fisheries College", "Guangdong Ocean University", 1, 0.92072, null, 0.03662, null, 0.79584, null, 0.46051, null, 49, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-09-14", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41310, "SRR4242453", "SRX2163333", "SRS1691356", "SRP089876", "PRJNA341782", "Danio rerio Phenotype or Genotype", "PRJNA341782", "Other", "Based on the differential comparison of transcriptomes of Homo   hetero zygote Het and wild type Wt  in vivo protein trap mutagenesis system  we have produced series of expression codex of the zebrafish. Here   we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.", null, null, null, null, "he 160", null, "strain:TU|isolate:heterozygous|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences  University of Toronto  Toronto  Canada. Xiao yan WEN|birth date:2015 05 01|genotype:heterozygous|phenotype:normal|treatment:in vivo protein trap mutagenesis|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "1", "he 160", "he 160", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP089876", null, null, "HE.fq", "fastq", 578835432.0, 11812968.0, "HE.fq", "0:49", "A:149797321;C:137638814;G:143656076;T:147699087;N:44134", 49, null, null, null, 149797321, 137638814, 143656076, 147699087, 44134, "SRX2163333", "SRS1691356", "SRA471230", "Guangdong Ocean University|Fisheries College", "Guangdong Ocean University", 1, 0.96392, null, 0.03868, null, 0.71064, null, 0.48997, null, 49, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-09-19", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41311, "SRR4242452", "SRX2163332", "SRS1691355", "SRP089876", "PRJNA341782", "Danio rerio Phenotype or Genotype", "PRJNA341782", "Other", "Based on the differential comparison of transcriptomes of Homo   hetero zygote Het and wild type Wt  in vivo protein trap mutagenesis system  we have produced series of expression codex of the zebrafish. Here   we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.", null, null, null, null, "wt 160", null, "strain:TU|isolate:wild type|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences  University of Toronto  Toronto  Canada. Xiao yan WEN|birth date:2015 05 01|genotype:wild type|phenotype:normal|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "1", "wt 160", "wt 160", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP089876", null, null, "WT.fq.gz", "fastq", 582208151.0, 11881799.0, "WT.fq.gz", "0:49", "A:151848733;C:138129346;G:143758419;T:148430704;N:40949", 49, null, null, null, 151848733, 138129346, 143758419, 148430704, 40949, "SRX2163332", "SRS1691355", "SRA471230", "Guangdong Ocean University|Fisheries College", "Guangdong Ocean University", 1, 0.95342, null, 0.04301, null, 0.75503, null, 0.48726, null, 49, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-09-19", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41349, "SRR4330940", "SRX2205508", "SRS1723862", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf  and used for transcriptome sequencing.", null, null, null, null, "ZIS 3", null, "strain:mutant biological replicate 3|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish mutant at 10 dpf", "ZIS 3", "ZIS 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "ZIS-3_S41_L003_R1_001.fastq ZIS-3_S41_L003_R2_001.fastq", "fastq fastq", 8951074036.0, 29639318.0, "ZIS 3 S41 L003 R1 001.fastq", "0:151 1:151", "A:2283207699;C:2181203331;G:2250920956;T:2233298555;N:2443495", 151, 151, null, null, 2283207699, 2181203331, 2250920956, 2233298555, 2443495, "SRX2205508", "SRS1723862", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94568, 0.94599, 0.04792, 0.04705, 0.68511, 0.69191, 0.48349, 0.49441, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41350, "SRR4330939", "SRX2205507", "SRS1723861", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf  and used for transcriptome sequencing.", null, null, null, null, "ZIS 2", null, "strain:mutant biological replicate 2|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish mutant at 10 dpf", "ZIS 2", "ZIS 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "ZIS-2_S40_L003_R1_001.fastq ZIS-2_S40_L003_R2_001.fastq", "fastq fastq", 9435991208.0, 31245004.0, "ZIS 2 S40 L003 R2 001.fastq", "0:151 1:151", "A:2432777029;C:2274473737;G:2351228268;T:2374883671;N:2628503", 151, 151, null, null, 2432777029, 2274473737, 2351228268, 2374883671, 2628503, "SRX2205507", "SRS1723861", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93852, 0.93895, 0.06814, 0.06752, 0.67464, 0.68185, 0.4731, 0.48737, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41351, "SRR4330938", "SRX2205506", "SRS1723859", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf  and used for transcriptome sequencing.", null, null, null, null, "ZIS 1", null, "strain:mutant biological replicate 1|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish mutant at 10 dpf", "ZIS 1", "ZIS 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "ZIS-1_S58_L004_R1_001.fastq ZIS-1_S58_L004_R2_001.fastq", "fastq fastq", 9474125956.0, 31371278.0, "ZIS 1 S58 L004 R1 001.fastq", "0:151 1:151", "A:2432127105;C:2294541938;G:2369906198;T:2374445988;N:3104727", 151, 151, null, null, 2432127105, 2294541938, 2369906198, 2374445988, 3104727, "SRX2205506", "SRS1723859", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94217, 0.94136, 0.05812, 0.05769, 0.67957, 0.68665, 0.48986, 0.48912, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41352, "SRR4330937", "SRX2205505", "SRS1723863", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf  and used for transcriptome sequencing.", null, null, null, null, "WT 3", null, "strain:wild type biological replicate 3|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 10 dpf", "WT 3", "WT 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "WT-3_S59_L004_R1_001.fastq WT-3_S59_L004_R2_001.fastq", "fastq fastq", 9459728710.0, 31323605.0, "WT 3 S59 L004 R2 001.fastq", "0:151 1:151", "A:2435834973;C:2283457751;G:2353515662;T:2383834638;N:3085686", 151, 151, null, null, 2435834973, 2283457751, 2353515662, 2383834638, 3085686, "SRX2205505", "SRS1723863", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93703, 0.93671, 0.06932, 0.06902, 0.67815, 0.68527, 0.49406, 0.48629, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41353, "SRR4330936", "SRX2205504", "SRS1723860", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf  and used for transcriptome sequencing.", null, null, null, null, "WT 2", null, "strain:wild type biological replicate 2|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 10 dpf", "WT 2", "WT 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "WT-2_S39_L003_R1_001.fastq WT-2_S39_L003_R2_001.fastq", "fastq fastq", 8115257628.0, 26871714.0, "WT 2 S39 L003 R1 001.fastq", "0:151 1:151", "A:2056302105;C:1991691115;G:2061808328;T:2003236611;N:2219469", 151, 151, null, null, 2056302105, 1991691115, 2061808328, 2003236611, 2219469, "SRX2205504", "SRS1723860", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.9479, 0.94848, 0.03505, 0.0349, 0.69946, 0.70638, 0.4871, 0.48737, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41354, "SRR4330935", "SRX2205503", "SRS1723858", "SRP090717", "PRJNA345071", "Transcriptome sequencing of zebrafish mutants", "PRJNA345071", "Other", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf  and used for transcriptome sequencing.", null, null, null, null, "WT 1", null, "strain:wild type biological replicate 1|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 10 dpf", "WT 1", "WT 1", "To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish  we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS /  were collected at 10 dpf and used for transcriptome sequencing.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP090717", null, null, "WT-1_S38_L003_R1_001.fastq WT-1_S38_L003_R2_001.fastq", "fastq fastq", 9771991274.0, 32357587.0, "WT 1 S38 L003 R2 001.fastq", "0:151 1:151", "A:2524417259;C:2348903783;G:2421563752;T:2474419170;N:2687310", 151, 151, null, null, 2524417259, 2348903783, 2421563752, 2474419170, 2687310, "SRX2205503", "SRS1723858", "SRA481515", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93787, 0.93896, 0.0697, 0.06907, 0.67446, 0.68162, 0.49385, 0.49554, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-31", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41603, "SRR5086607", "SRX2403900", "SRS1843204", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "RIP2 Etarda 2", null, "isolate:RIP2 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RIP2 Etarda 2", "RIP2 Etarda 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R2.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R1.fastq.gz", "fastq fastq", 12903564000.0, 43011880.0, "S231 07B CHG009012 0413lane6 RP E tarda 2 L003 R1.fastq.gz", "0:150 1:150", "A:3540121379;C:2905716861;G:3027503729;T:3429809429;N:412602", 150, 150, null, null, 3540121379, 2905716861, 3027503729, 3429809429, 412602, "SRX2403900", "SRS1843204", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91895, 0.92448, 0.22816, 0.22865, 0.6873, 0.69104, 0.59821, 0.59683, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-12-08", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41604, "SRR5086606", "SRX2403899", "SRS1843203", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "NOD1 Etarda 1", null, "isolate:NOD1 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish NOD1 mutant at 7 dpf", "NOD1 Etarda 1", "NOD1 Etarda 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R2.fastq.gz", "fastq fastq", 12320572500.0, 41068575.0, "S231 07B CHG009012 0413lane6 ND E tarda 1 L003 R1.fastq.gz", "0:150 1:150", "A:3355646078;C:2797387103;G:2920550779;T:3246590603;N:397937", 150, 150, null, null, 3355646078, 2797387103, 2920550779, 3246590603, 397937, "SRX2403899", "SRS1843203", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.86604, 0.87043, 0.20071, 0.20146, 0.69369, 0.69869, 0.5907, 0.59843, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41605, "SRR5086605", "SRX2403898", "SRS1843202", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "NOD1 Etarda 2", null, "isolate:NOD1 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish NOD1 mutant at 7 dpf", "NOD1 Etarda 2", "NOD1 Etarda 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R2.fastq.gz", "fastq fastq", 15551299800.0, 51837666.0, "S231 07B CHG009012 0413lane6 ND E tarda 2 L003 R1.fastq.gz", "0:150 1:150", "A:4265070757;C:3495006741;G:3648563581;T:4142124454;N:534267", 150, 150, null, null, 4265070757, 3495006741, 3648563581, 4142124454, 534267, "SRX2403898", "SRS1843202", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.86759, 0.86834, 0.23528, 0.23586, 0.68779, 0.69272, 0.57804, 0.57769, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41606, "SRR5086604", "SRX2403897", "SRS1843201", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "RIP2 Etarda 3", null, "isolate:RIP2 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RIP2 Etarda 3", "RIP2 Etarda 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R2.fastq.gz", "fastq fastq", 12144058200.0, 40480194.0, "S231 07B CHG009012 0413lane6 RP E tarda 3 L003 R1.fastq.gz", "0:150 1:150", "A:3277198817;C:2779538400;G:2897367228;T:3189540397;N:413358", 150, 150, null, null, 3277198817, 2779538400, 2897367228, 3189540397, 413358, "SRX2403897", "SRS1843201", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91654, 0.9175, 0.25593, 0.25637, 0.68795, 0.69414, 0.56468, 0.56806, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41607, "SRR5086603", "SRX2403896", "SRS1843200", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "WT Etarda 3", null, "isolate:wild type biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "WT Etarda 3", "WT Etarda 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R2.fastq.gz", "fastq fastq", 13158784200.0, 43862614.0, "S231 07B CHG009012 0413lane6 WT E tarda 3 L003 R1.fastq.gz", "0:150 1:150", "A:3492740553;C:3076792456;G:3216533074;T:3372287751;N:430366", 150, 150, null, null, 3492740553, 3076792456, 3216533074, 3372287751, 430366, "SRX2403896", "SRS1843200", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91602, 0.92416, 0.23246, 0.23514, 0.68164, 0.68663, 0.55407, 0.55215, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41608, "SRR5086602", "SRX2403895", "SRS1843199", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "WT Etarda 1", null, "isolate:wild type biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7dpf", "WT Etarda 1", "WT Etarda 1", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R2.fastq.gz", "fastq fastq", 11991766500.0, 39972555.0, "S231 07B CHG009012 0413lane6 WT E tarda 1 L003 R1.fastq.gz", "0:150 1:150", "A:3282107515;C:2699757677;G:2810716102;T:3198780035;N:405171", 150, 150, null, null, 3282107515, 2699757677, 2810716102, 3198780035, 405171, "SRX2403895", "SRS1843199", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91731, 0.91778, 0.23094, 0.23042, 0.6784, 0.68596, 0.59413, 0.59241, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41609, "SRR5086601", "SRX2403894", "SRS1843198", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "NOD1 Etarda 3", null, "isolate:NOD1 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish NOD1 mutant at 7 dpf", "NOD1 Etarda 3", "NOD1 Etarda 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R2.fastq.gz", "fastq fastq", 13231011300.0, 44103371.0, "S231 07B CHG009012 0413lane6 ND E tarda 3 L003 R1.fastq.gz", "0:150 1:150", "A:3583948856;C:3022120866;G:3144073054;T:3480438095;N:430429", 150, 150, null, null, 3583948856, 3022120866, 3144073054, 3480438095, 430429, "SRX2403894", "SRS1843198", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.8625, 0.86327, 0.21095, 0.21123, 0.69126, 0.69808, 0.59807, 0.59873, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41610, "SRR5086600", "SRX2403893", "SRS1843197", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "WT Etarda 2", null, "isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "WT Etarda 2", "WT Etarda 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R2.fastq.gz", "fastq fastq", 11385997200.0, 37953324.0, "S231 07B CHG009012 0413lane6 WT E tarda 2 L003 R1.fastq.gz", "0:150 1:150", "A:3100666193;C:2581361422;G:2676308702;T:3027299840;N:361043", 150, 150, null, null, 3100666193, 2581361422, 2676308702, 3027299840, 361043, "SRX2403893", "SRS1843197", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.91592, 0.91843, 0.23215, 0.23276, 0.67894, 0.6843, 0.56756, 0.57405, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41611, "SRR5086599", "SRX2403892", "SRS1843196", "SRP094738", "PRJNA356682", "Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection", "PRJNA356682", "Other", "To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition  we performed transcriptome analysis. Zebrafish larvae from WT  NOD1 /  and RIP /  were infected with Edwardsiella tarda  and collected at 24 hours post infection hpi.", null, null, null, null, "RIP2 Etarda 1", null, "isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RIP2 Etarda 1", "RIP2 Etarda 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP094738", null, null, "S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R2.fastq.gz", "fastq fastq", 12517987200.0, 41726624.0, "S231 07B CHG009012 0413lane6 RP E tarda 1 L003 R1.fastq.gz", "0:150 1:150", "A:3383702176;C:2864897363;G:2969958296;T:3299042555;N:386810", 150, 150, null, null, 3383702176, 2864897363, 2969958296, 3299042555, 386810, "SRX2403892", "SRS1843196", "SRA501516", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.92847, 0.93046, 0.20764, 0.20908, 0.68217, 0.68889, 0.58846, 0.59063, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-11-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41754, "SRR5131065", "SRX2444929", "SRS1878801", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 /  were collected at 7 dpf  and used for transcriptome sequencing.", null, null, null, null, "control 3", null, "isolate:wild type biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "control 3", "control 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-WT-3_L001_R2.fastq.gz S231_07B_CHG009010-0413lane4-WT-3_L001_R1.fastq.gz", "fastq fastq", 7170870300.0, 23902901.0, "S231 07B CHG009010 0413lane4 WT 3 L001 R2.fastq.gz", "0:150 1:150", "A:1861223343;C:1713993670;G:1720465419;T:1875067010;N:120858", 150, 150, null, null, 1861223343, 1713993670, 1720465419, 1875067010, 120858, "SRX2444929", "SRS1878801", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93719, 0.93331, 0.07804, 0.07734, 0.66478, 0.67152, 0.48991, 0.48846, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2016-12-25", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41755, "SRR5131064", "SRX2444928", "SRS1878800", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 /  were collected at 7 dpf  and used for transcriptome sequencing.", null, null, null, null, "RP 3", null, "isolate:RIP2 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RP 3", "RP 3", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-RP-3_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-3_L001_R2.fastq.gz", "fastq fastq", 7468205400.0, 24894018.0, "S231 07B CHG009010 0413lane4 RP 3 L001 R1.fastq.gz", "0:150 1:150", "A:1923116988;C:1800729614;G:1804880487;T:1939349442;N:128869", 150, 150, null, null, 1923116988, 1800729614, 1804880487, 1939349442, 128869, "SRX2444928", "SRS1878800", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94182, 0.93791, 0.07003, 0.06911, 0.67391, 0.68032, 0.48725, 0.48383, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41756, "SRR5131063", "SRX2444927", "SRS1878799", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 /  were collected at 7 dpf  and used for transcriptome sequencing.", null, null, null, null, "control 1", null, "isolate:wild type biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7dpf", "control 1", "control 1", "To investigate the possible mechanism that RIP2 impacts immune response in zebrafish  we performed transcriptome analysis. Zebrafish larvae from WT and RIP /  were collected at 7 dpf.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-WT-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-1_L001_R2.fastq.gz", "fastq fastq", 7794774600.0, 25982582.0, "S231 07B CHG009010 0413lane4 WT 1 L001 R1.fastq.gz", "0:150 1:150", "A:2030478380;C:1854310335;G:1862519444;T:2047324790;N:141651", 150, 150, null, null, 2030478380, 1854310335, 1862519444, 2047324790, 141651, "SRX2444927", "SRS1878799", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94149, 0.93653, 0.07296, 0.07218, 0.66614, 0.67294, 0.49615, 0.48813, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41757, "SRR5131062", "SRX2444926", "SRS1878798", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 /  were collected at 7 dpf  and used for transcriptome sequencing.", null, null, null, null, "control 2", null, "isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish wildtype at 7 dpf", "control 2", "control 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-WT-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-2_L001_R2.fastq.gz", "fastq fastq", 5623326600.0, 18744422.0, "S231 07B CHG009010 0413lane4 WT 2 L001 R2.fastq.gz", "0:150 1:150", "A:1451164902;C:1350358314;G:1359170147;T:1462531546;N:101691", 150, 150, null, null, 1451164902, 1350358314, 1359170147, 1462531546, 101691, "SRX2444926", "SRS1878798", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.93864, 0.93904, 0.06797, 0.06755, 0.67048, 0.67521, 0.49371, 0.48819, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41758, "SRR5131061", "SRX2444925", "SRS1878797", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 /  were collected at 7 dpf  and used for transcriptome sequencing.", null, null, null, null, "RP 1", null, "isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RP 1", "RP 1", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-RP-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-1_L001_R2.fastq.gz", "fastq fastq", 8583762600.0, 28612542.0, "S231 07B CHG009010 0413lane4 RP 1 L001 R2.fastq.gz", "0:150 1:150", "A:2233488442;C:2047436003;G:2053585249;T:2249097620;N:155286", 150, 150, null, null, 2233488442, 2047436003, 2053585249, 2249097620, 155286, "SRX2444925", "SRS1878797", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94045, 0.93559, 0.08356, 0.0825, 0.66576, 0.67188, 0.48456, 0.48745, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [41759, "SRR5131060", "SRX2444924", "SRS1878796", "SRP095651", "PRJNA358793", "Transcriptome sequencing of zebrafish RIP2 mutants", "PRJNA358793", "Other", "Zebrafish larvae from wildtype and RIP2 /  were collected at 7 dpf  and used for transcriptome sequencing.", null, null, null, null, "RP 2", null, "isolate:RIP2 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish RIP2 mutant at 7 dpf", "RP 2", "RP 2", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP095651", null, null, "S231_07B_CHG009010-0413lane4-RP-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-2_L001_R2.fastq.gz", "fastq fastq", 6660884700.0, 22202949.0, "S231 07B CHG009010 0413lane4 RP 2 L001 R1.fastq.gz", "0:150 1:150", "A:1716524391;C:1604826566;G:1610050455;T:1729364340;N:118948", 150, 150, null, null, 1716524391, 1604826566, 1610050455, 1729364340, 118948, "SRX2444924", "SRS1878796", "SRA510115", "Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.94509, 0.94069, 0.07191, 0.0702, 0.67322, 0.68045, 0.4937, 0.4864, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-21", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [55655, "SRR10674410", "SRX7351703", "SRS5811186", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 100 1", null, "isolate:biologocal replicate 10|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050110", "bps050110", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_100_1_1.fq.gz BPS_100_1_2.fq.gz", "fastq fastq", 6958801200.0, 69588012.0, "BPS 100 1 1.fq.gz", "0:100 1:100", "A:1852139865;C:1635606671;G:1596180575;T:1874072794;N:801295", 100, 100, null, null, 1852139865, 1635606671, 1596180575, 1874072794, 801295, "SRX7351703", "SRS5811186", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94716, null, 0.09824, null, 0.68475, null, 0.47195, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55656, "SRR10674411", "SRX7351702", "SRS5811185", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 10 3", null, "isolate:biologocal replicate 9|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050109", "bps050109", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_10_3_1.fq.gz BPS_10_3_2.fq.gz", "fastq fastq", 6969574800.0, 69695748.0, "BPS 10 3 1.fq.gz", "0:100 1:100", "A:1860393053;C:1631995190;G:1597357772;T:1879188120;N:640665", 100, 100, null, null, 1860393053, 1631995190, 1597357772, 1879188120, 640665, "SRX7351702", "SRS5811185", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94597, null, 0.10542, null, 0.68016, null, 0.4666, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55657, "SRR10674412", "SRX7351701", "SRS5811182", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 10 2", null, "isolate:biologocal replicate 8|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050108", "bps050108", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_10_2_1.fq.gz BPS_10_2_2.fq.gz", "fastq fastq", 6709340400.0, 67093404.0, "BPS 10 2 1.fq.gz", "0:100 1:100", "A:2036224090;C:1319652145;G:1297564214;T:2055258677;N:641274", 100, 100, null, null, 2036224090, 1319652145, 1297564214, 2055258677, 641274, "SRX7351701", "SRS5811182", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.87778, null, 0.38111, null, 0.71543, null, 0.56061, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55658, "SRR10674413", "SRX7351700", "SRS5811181", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 10 1", null, "isolate:biologocal replicate 7|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050107", "bps050107", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_10_1_1.fq.gz BPS_10_1_2.fq.gz", "fastq fastq", 6717746800.0, 67177468.0, "BPS 10 1 1.fq.gz", "0:100 1:100", "A:1787637885;C:1578942212;G:1548400030;T:1802147201;N:619472", 100, 100, null, null, 1787637885, 1578942212, 1548400030, 1802147201, 619472, "SRX7351700", "SRS5811181", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94726, null, 0.10123, null, 0.68919, null, 0.45234, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55659, "SRR10674414", "SRX7351699", "SRS5811184", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1 3", null, "isolate:biologocal replicate 6|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050106", "bps050106", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_1_3_2.fq.gz BPS_1_3_1.fq.gz", "fastq fastq", 6726522800.0, 67265228.0, "BPS 1 3 1.fq.gz", "0:100 1:100", "A:1789486049;C:1582069064;G:1548432478;T:1805913744;N:621465", 100, 100, null, null, 1789486049, 1582069064, 1548432478, 1805913744, 621465, "SRX7351699", "SRS5811184", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.9465, null, 0.09858, null, 0.68442, null, 0.45032, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55660, "SRR10674415", "SRX7351698", "SRS5811180", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1 2", null, "isolate:biologocal replicate 5|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050105", "bps050105", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_1_2_2.fq.gz BPS_1_2_1.fq.gz", "fastq fastq", 6959685000.0, 69596850.0, "BPS 1 2 1.fq.gz", "0:100 1:100", "A:1914426129;C:1574998719;G:1542052351;T:1927550147;N:657654", 100, 100, null, null, 1914426129, 1574998719, 1542052351, 1927550147, 657654, "SRX7351698", "SRS5811180", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94034, null, 0.14574, null, 0.69934, null, 0.47033, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55661, "SRR10674416", "SRX7351697", "SRS5811183", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1 1", null, "isolate:biologocal replicate 4|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050104", "bps050104", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_1_1_1.fq.gz BPS_1_1_2.fq.gz", "fastq fastq", 7040826400.0, 70408264.0, "BPS 1 1 1.fq.gz", "0:100 1:100", "A:1915125100;C:1612334047;G:1578924466;T:1933922418;N:520369", 100, 100, null, null, 1915125100, 1612334047, 1578924466, 1933922418, 520369, "SRX7351697", "SRS5811183", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94114, null, 0.13158, null, 0.68903, null, 0.47739, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55662, "SRR10674417", "SRX7351696", "SRS5811179", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 0 1 3", null, "isolate:biologocal replicate 3|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050103", "bps050103", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_0_1_3_1.fq.gz BPS_0_1_3_2.fq.gz", "fastq fastq", 6992676800.0, 69926768.0, "BPS 0 1 3 1.fq.gz", "0:100 1:100", "A:1860627581;C:1643489002;G:1610508221;T:1877536968;N:515028", 100, 100, null, null, 1860627581, 1643489002, 1610508221, 1877536968, 515028, "SRX7351696", "SRS5811179", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94485, null, 0.101, null, 0.68314, null, 0.45711, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55663, "SRR10674418", "SRX7351695", "SRS5811178", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "Cntrol3", null, "isolate:biologocal replicate 18|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050118", "bps050118", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "Cntrol3_1.fq.gz Cntrol3_2.fq.gz", "fastq fastq", 6742983200.0, 67429832.0, "Cntrol3 1.fq.gz", "0:100 1:100", "A:1801392073;C:1577630219;G:1545614005;T:1817857809;N:489094", 100, 100, null, null, 1801392073, 1577630219, 1545614005, 1817857809, 489094, "SRX7351695", "SRS5811178", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94386, null, 0.10779, null, 0.68832, null, 0.45545, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55664, "SRR10674419", "SRX7351694", "SRS5811177", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "Cntrol2", null, "isolate:biologocal replicate 17|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050117", "bps050117", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "Cntrol2_1.fq.gz Cntrol2_2.fq.gz", "fastq fastq", 6750661000.0, 67506610.0, "Cntrol2 1.fq.gz", "0:100 1:100", "A:1796606666;C:1585909518;G:1556014239;T:1811284557;N:846020", 100, 100, null, null, 1796606666, 1585909518, 1556014239, 1811284557, 846020, "SRX7351694", "SRS5811177", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94397, null, 0.10007, null, 0.68708, null, 0.47779, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55665, "SRR10674420", "SRX7351693", "SRS5811174", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "Cntrol1", null, "isolate:biologocal replicate 16|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050116", "bps050116", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "Cntrol1_1.fq.gz Cntrol1_2.fq.gz", "fastq fastq", 6766663000.0, 67666630.0, "Cntrol1 1.fq.gz", "0:100 1:100", "A:1825736389;C:1564390057;G:1532835305;T:1842876742;N:824507", 100, 100, null, null, 1825736389, 1564390057, 1532835305, 1842876742, 824507, "SRX7351693", "SRS5811174", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94047, null, 0.12338, null, 0.68893, null, 0.46407, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55666, "SRR10674421", "SRX7351692", "SRS5811176", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1000 3", null, "isolate:biologocal replicate 15|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050115", "bps050115", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_1000_3_1.fq.gz BPS_1000_3_2.fq.gz", "fastq fastq", 6507622200.0, 65076222.0, "BPS 1000 3 1.fq.gz", "0:100 1:100", "A:1735402948;C:1525938362;G:1493787016;T:1751945676;N:548198", 100, 100, null, null, 1735402948, 1525938362, 1493787016, 1751945676, 548198, "SRX7351692", "SRS5811176", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94304, null, 0.10593, null, 0.6842, null, 0.46348, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55667, "SRR10674422", "SRX7351691", "SRS5811173", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1000 2", null, "isolate:biologocal replicate 14|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050114", "bps050114", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_1000_2_1.fq.gz BPS_1000_2_2.fq.gz", "fastq fastq", 6740712000.0, 67407120.0, "BPS 1000 2 1.fq.gz", "0:100 1:100", "A:1816870993;C:1562402111;G:1527381283;T:1833284067;N:773546", 100, 100, null, null, 1816870993, 1562402111, 1527381283, 1833284067, 773546, "SRX7351691", "SRS5811173", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94327, null, 0.11511, null, 0.70033, null, 0.4551, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55668, "SRR10674423", "SRX7351690", "SRS5811175", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 1000 1", null, "isolate:biologocal replicate 13|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050113", "bps050113", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_1000_1_1.fq.gz BPS_1000_1_2.fq.gz", "fastq fastq", 6727750400.0, 67277504.0, "BPS 1000 1 1.fq.gz", "0:100 1:100", "A:1803578734;C:1568712705;G:1535618959;T:1819016739;N:823263", 100, 100, null, null, 1803578734, 1568712705, 1535618959, 1819016739, 823263, "SRX7351690", "SRS5811175", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94457, null, 0.1118, null, 0.69087, null, 0.46815, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55669, "SRR10674424", "SRX7351689", "SRS5811172", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 100 3", null, "isolate:biologocal replicate 12|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050112", "bps050112", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_100_3_1.fq.gz BPS_100_3_2.fq.gz", "fastq fastq", 6962431800.0, 69624318.0, "BPS 100 3 1.fq.gz", "0:100 1:100", "A:1865300693;C:1624120289;G:1585691091;T:1886538935;N:780792", 100, 100, null, null, 1865300693, 1624120289, 1585691091, 1886538935, 780792, "SRX7351689", "SRS5811172", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94581, null, 0.10195, null, 0.68288, null, 0.47174, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55670, "SRR10674425", "SRX7351688", "SRS5811171", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 100 2", null, "isolate:biologocal replicate 11|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050111", "bps050111", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_100_2_1.fq.gz BPS_100_2_2.fq.gz", "fastq fastq", 7201035800.0, 72010358.0, "BPS 100 2 1.fq.gz", "0:100 1:100", "A:2115590854;C:1489181336;G:1459936470;T:2135514629;N:812511", 100, 100, null, null, 2115590854, 1489181336, 1459936470, 2135514629, 812511, "SRX7351688", "SRS5811171", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.90678, null, 0.29289, null, 0.70735, null, 0.49554, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55671, "SRR10674426", "SRX7351687", "SRS5811170", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 0 1 2", null, "isolate:biologocal replicate 2|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050102", "bps050102", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_0_1_2_1.fq.gz BPS_0_1_2_2.fq.gz", "fastq fastq", 7022382800.0, 70223828.0, "BPS 0 1 2 1.fq.gz", "0:100 1:100", "A:1853514579;C:1663935080;G:1635277415;T:1869136960;N:518766", 100, 100, null, null, 1853514579, 1663935080, 1635277415, 1869136960, 518766, "SRX7351687", "SRS5811170", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94712, null, 0.09313, null, 0.6814, null, 0.47256, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [55672, "SRR10674427", "SRX7351686", "SRS5811167", "SRP237283", "PRJNA595113", "Transcriptomic responses of Bisphenol S on zebrafish", "PRJNA595113", "Other", "To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure  global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure  we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.", null, null, null, null, "BPS 0 1 1", null, "isolate:biologocal replicate 1|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptomic responses of Bisphenol S", "bps050101", "bps050101", "An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent  Santa Clara  CA  USA with only high quality RNA samples 28 S:18 S=2.02.2  RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen  China . The libraries were sequenced at the Beijing Genomics Institute BGI  Shenzhen  China on a BGISEQ500 platform with 50 bp single end reads  under three replicates per treatment group.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP237283", null, null, "BPS_0_1_1_1.fq.gz BPS_0_1_1_2.fq.gz", "fastq fastq", 7013900400.0, 70139004.0, "BPS 0 1 1 1.fq.gz", "0:100 1:100", "A:1885826391;C:1629114228;G:1597181244;T:1901261511;N:517026", 100, 100, null, null, 1885826391, 1629114228, 1597181244, 1901261511, 517026, "SRX7351686", "SRS5811167", "SRA1010884", "Southern University of Science and Technology|School of Environmental Science and Engineering", "Southern University of Science and Technology", 1, 0.94226, null, 0.11616, null, 0.69014, null, 0.45679, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2019-12-12", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [60550, "SRR12342828", "SRX8842536", "SRS7105601", "SRP274071", "PRJNA649399", "zebrafish 5 dpf sequencing", "PRJNA649399", "Other", "For a more comprehensive analysis for the role of oxr1a on zebrafish for protection against oxidative stress", null, null, null, null, "WT CTRL", null, "strain:no|isolate:without|breed:AB line|cultivar:1|ecotype:2|age:5 dpf|dev stage:larval|sex:male|tissue:whole fish|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "whole fish", "729729", "729729", "AB line gene knockout", null, null, "WGS", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP274071", null, null, "WT_ctrl1 WT_ctrl2", "fastq fastq", 2795932250.0, 11183729.0, "WT ctrl1.gz", "0:125 1:125", "A:714170507;C:687382036;G:684930011;T:709446720;N:2976", 125, 125, null, null, 714170507, 687382036, 684930011, 709446720, 2976, "SRX8842536", "SRS7105601", "SRA1105186", "Southwest University|College of Animal Science and Technolgoy", "Southwest University", 2, 0.96284, 0.9622, 0.06398, 0.06785, 0.70276, 0.70179, 0.50363, 0.50583, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-29", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [60823, "SRR12494407", "SRX8985926", "SRS7239898", "SRP278434", "PRJNA658611", "zebrafish starvation stress", "PRJNA658611", "Other", "RNA Seq Analysis Reveals the Molecular Response Mechanisms in Zebrafish Larvae Undergoing Starvation During the Mouth opening Stage", null, null, null, null, "sszf", null, "strain:AB line|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:8 days|dev stage:larval fish|sex:not determined|tissue:not collected|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome analysis reveals the role of exogenous feeding in regulating antioxidant defenses during the mouth opening stage in zebrafish larvae", "821", "821", "RNA sequencing", null, null, "WGS", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP278434", null, null, "Starved2-R2.R2.clean.fastq.gz Starved2-R1.R1.clean.fastq.gz Starved1-R2.R2.clean.fastq.gz Starved1-R1.R1.clean.fastq.gz Control2-R2.R2.clean.fastq.gz Control2-R1.R1.clean.fastq.gz Control1-R2.R2.clean.fastq.gz Control1-R1.R1.clean.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 11815834250.0, 47263337.0, "Control1 R1.R1.clean.fastq.gz", "0:125 1:125", "A:2985063485;C:2935671076;G:2921346976;T:2973732805;N:19908", 125, 125, null, null, 2985063485, 2935671076, 2921346976, 2973732805, 19908, "SRX8985926", "SRS7239898", "SRA1115895", "Southwest University|College of Animal Science and Technolgoy", "Southwest University", 2, 0.9663, 0.96526, 0.05986, 0.06116, 0.70889, 0.71108, 0.50789, 0.50441, 125, 125, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-08-21", "Larval", "Larval", "Undetermined", "Undetermined"], [62699, "SRR13320609", "SRX9748089", "SRS7936232", "SRP299308", "PRJNA688414", "WT and oxr1b mutant zebrafish sequencing", "PRJNA688414", "Other", "To clarify the role of oxr1b in regulating genome wide gene expression during early oxidative stress response  the comparative transcriptome analysis of WT and oxr1b /  mutant zebrafish larvae were performed by RNA seq.", null, null, null, "danio rerio", "zebrafish larval", null, "strain:AB line|isolate:n1|breed:wt type and mutant|cultivar:no|ecotype:Chongqing|age:5 dpf|dev stage:larval stage|sex:not collected|tissue:whole fish|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Transcriptome Analysis the Early Molecular Response of Oxr1b /  Mutant Zebrafish Larvae to Oxidative Stress by RNA Seq", "MJ20201107019", "MJ20201107019", "The total RNA samples were isolated from WT and oxr1b /  mutant zebrafish larvae by the RNAiso Plus kit", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP299308", null, null, "WT_H2O2.R1.fastq.gz WT_H2O2.R2.fastq.gz WT_ctrl.R1.fastq.gz WT_ctrl.R2.fastq.gz moxr1b_H2O2.R1.fastq.gz moxr1b_H2O2.R2.fastq.gz moxr1b_ctrl.R1.fastq.gz moxr1b_ctrl.R2.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 30986524572.0, 102604386.0, "WT H2O2.R1.fastq.gz", "0:151 1:151", "A:8204027517;C:7238523175;G:7419111448;T:8124456513;N:405919", 151, 151, null, null, 8204027517, 7238523175, 7419111448, 8124456513, 405919, "SRX9748089", "SRS7936232", "SRA1178651", "Southwest University|College of Fisheries", "Southwest University", 2, 0.94082, 0.91236, 0.08994, 0.08673, 0.65997, 0.66478, 0.48105, 0.48139, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-12-29", "Larval", "Larval", "Whole Organism", "All anatomical structures"], [64197, "SRR14319883", "SRX10675035", "SRS8769036", "SRP316198", "PRJNA724884", "Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos", "PRJNA724884", "Other", "The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR  telomere protection and neuro development.", null, null, null, null, "yyl homo zf rep2", null, "replicate:2|date:2/20/2021/3pm|breed:AB|age:10 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: 3d embryos", "LDA9530", "LDA9530", "RNA libraries were prepared for sequencing using standard Illumina protocols", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP316198", null, null, "TRF2_homozygous_3d_2_LDA9530Aligned.sortedByCoord.out.bam", "bam", 13532124350.0, 45108312.0, "TRF2 homozygous 3d 2 LDA9530Aligned.sortedByCoord.out.bam", "0:150.00 1:150.00", "A:3411777260;C:3360449196;G:3332955645;T:3425874531;N:1067718", 150, 150, null, null, 3411777260, 3360449196, 3332955645, 3425874531, 1067718, "SRX10675035", "SRS8769036", "SRA1223267", "Ruijin hospital, Shanghai, China|Emergency Medchine", "Ruijin hospital, Shanghai, China", 2, 0.96358, 0.96219, 0.06413, 0.06452, 0.67101, 0.67304, 0.45519, 0.45225, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-04-24", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [64198, "SRR14319884", "SRX10675034", "SRS8769035", "SRP316198", "PRJNA724884", "Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos", "PRJNA724884", "Other", "The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR  telomere protection and neuro development.", null, null, null, null, "yyl homo zf rep1", null, "replicate:1|date:2/20/2021/2pm|breed:AB|age:9 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: 3d embryos", "LDA9528", "LDA9528", "RNA libraries were prepared for sequencing using standard Illumina protocols", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP316198", null, "assembly:GRCz11", "TRF2_homozygous_3d_1_LDA9528Aligned.sortedByCoord.out.bam", "bam", 14927377118.0, 51943892.0, "TRF2 homozygous 3d 1 LDA9528Aligned.sortedByCoord.out.bam", "0:143.69 1:143.69", "A:3703977593;C:3766420543;G:3739925195;T:3715825628;N:1228159", 143, 143, null, null, 3703977593, 3766420543, 3739925195, 3715825628, 1228159, "SRX10675034", "SRS8769035", "SRA1223267", "Ruijin hospital, Shanghai, China|Emergency Medchine", "Ruijin hospital, Shanghai, China", 2, 0.96471, 0.96437, 0.0498, 0.05004, 0.66906, 0.67036, 0.45421, 0.45111, 98, 98, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-05-17", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [64199, "SRR14319885", "SRX10675033", "SRS8769034", "SRP316198", "PRJNA724884", "Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos", "PRJNA724884", "Other", "The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR  telomere protection and neuro development.", null, null, null, null, "yyl hybrid zf rep3", null, "replicate:3|date:2/15/2021/12am|breed:AB|age:8 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: 3d embryos", "LDA9527", "LDA9527", "RNA libraries were prepared for sequencing using standard Illumina protocols", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP316198", null, null, "TRF2_hybrid_3d_3_LDA9527Aligned.sortedByCoord.out.bam", "bam", 12450675900.0, 41503258.0, "TRF2 hybrid 3d 3 LDA9527Aligned.sortedByCoord.out.bam", "0:150.00 1:150.00", "A:3154217597;C:3079057917;G:3050871836;T:3166472619;N:55931", 150, 150, null, null, 3154217597, 3079057917, 3050871836, 3166472619, 55931, "SRX10675033", "SRS8769034", "SRA1223267", "Ruijin hospital, Shanghai, China|Emergency Medchine", "Ruijin hospital, Shanghai, China", 2, 0.97361, 0.97378, 0.0695, 0.06953, 0.65884, 0.65922, 0.44942, 0.45124, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-04-24", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [64200, "SRR14319886", "SRX10675032", "SRS8769033", "SRP316198", "PRJNA724884", "Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos", "PRJNA724884", "Other", "The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR  telomere protection and neuro development.", null, null, null, null, "yyl hybrid zf rep2", null, "replicate:2|date:2/15/2021/11am|breed:AB|age:7 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: 3d embryos", "LDA9526", "LDA9526", "RNA libraries were prepared for sequencing using standard Illumina protocols", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP316198", null, null, "TRF2_hybrid_3d_2_LDA9526Aligned.sortedByCoord.out.bam", "bam", 13705312262.0, 45685613.0, "TRF2 hybrid 3d 2 LDA9526Aligned.sortedByCoord.out.bam", "0:150.00 1:150.00", "A:3456147807;C:3403904273;G:3377881707;T:3466298988;N:1079487", 150, 150, null, null, 3456147807, 3403904273, 3377881707, 3466298988, 1079487, "SRX10675032", "SRS8769033", "SRA1223267", "Ruijin hospital, Shanghai, China|Emergency Medchine", "Ruijin hospital, Shanghai, China", 2, 0.96349, 0.96378, 0.06028, 0.06096, 0.66296, 0.66655, 0.46411, 0.4594, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-04-24", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [64201, "SRR14319887", "SRX10675031", "SRS8769032", "SRP316198", "PRJNA724884", "Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos", "PRJNA724884", "Other", "The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR  telomere protection and neuro development.", null, null, null, null, "yyl hybrid zf rep1", null, "replicate:1|date:2/15/2021/10am|breed:AB|age:6 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: 3d embryos", "LDA9525", "LDA9525", "RNA libraries were prepared for sequencing using standard Illumina protocols", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP316198", null, null, "TRF2_hybrid_3d_1_LDA9525Aligned.sortedByCoord.out.bam", "bam", 14038287516.0, 46795622.0, "TRF2 hybrid 3d 1 LDA9525Aligned.sortedByCoord.out.bam", "0:150.00 1:150.00", "A:3551265371;C:3474535373;G:3450978358;T:3560404727;N:1103687", 150, 150, null, null, 3551265371, 3474535373, 3450978358, 3560404727, 1103687, "SRX10675031", "SRS8769032", "SRA1223267", "Ruijin hospital, Shanghai, China|Emergency Medchine", "Ruijin hospital, Shanghai, China", 2, 0.96271, 0.96308, 0.06105, 0.06177, 0.66403, 0.6672, 0.45387, 0.4559, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-04-24", "Larval", "Larval", "Embryo Imprecise", "All anatomical structures"], [64202, "SRR14319888", "SRX10675030", "SRS8769031", "SRP316198", "PRJNA724884", "Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos", "PRJNA724884", "Other", "The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. 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