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To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "wildtype sibling sample1", "SAMD00400820", null, "sample name:rw147 2.5dpf wildtype  rep 1|biological replicate:1", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400820", "DRX305191", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400820", null, null, null, 10491955578.0, 34900682.0, "DRR315799", "0:150.34 1:150.28", "A:2796521111;C:2446218287;G:2483414564;T:2765477785;N:323831", 150, 150, null, null, 2796521111, 2446218287, 2483414564, 2765477785, 323831, "DRX305191", "DRS231986", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.9539, 0.95646, 0.08185, 0.07808, 0.70025, 0.70013, 0.44713, 0.44987, 150, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [10, "DRR315798", "DRX305190", "DRS231985", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample4", "SAMD00400819", null, "sample name:rw147 2.5dpf Mutant  rep 4|biological replicate:4", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400819", "DRX305190", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400819", null, null, null, 9197802250.0, 30604326.0, "DRR315798", "0:150.30 1:150.24", "A:2468967963;C:2130949980;G:2158692262;T:2438931017;N:261028", 150, 150, null, null, 2468967963, 2130949980, 2158692262, 2438931017, 261028, "DRX305190", "DRS231985", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95159, 0.95439, 0.10146, 0.09758, 0.71995, 0.71983, 0.46519, 0.46797, 150, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [11, "DRR315797", "DRX305189", "DRS231984", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample3", "SAMD00400818", null, "sample name:rw147 2.5dpf Mutant  rep 3|biological replicate:3", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400818", "DRX305189", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400818", null, null, null, 10498982078.0, 34931731.0, "DRR315797", "0:150.31 1:150.25", "A:2804535103;C:2445295179;G:2478768789;T:2770066062;N:316945", 150, 150, null, null, 2804535103, 2445295179, 2478768789, 2770066062, 316945, "DRX305189", "DRS231984", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95448, 0.95652, 0.0939, 0.0887, 0.71796, 0.71847, 0.46335, 0.46615, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [12, "DRR315796", "DRX305188", "DRS231983", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample2", "SAMD00400817", null, "sample name:rw147 2.5dpf Mutant  rep 2|biological replicate:2", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400817", "DRX305188", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400817", null, null, null, 9850145990.0, 32782079.0, "DRR315796", "0:150.26 1:150.21", "A:2636205537;C:2286508705;G:2319481100;T:2607600624;N:350024", 150, 150, null, null, 2636205537, 2286508705, 2319481100, 2607600624, 350024, "DRX305188", "DRS231983", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95193, 0.95472, 0.09722, 0.09375, 0.7138, 0.71299, 0.45542, 0.45994, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [13, "DRR315795", "DRX305187", "DRS231982", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample1", "SAMD00400816", null, "sample name:rw147 2.5dpf Mutant  rep 1|biological replicate:1", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400816", "DRX305187", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400816", null, null, null, 9542039835.0, 31780260.0, "DRR315795", "0:150.15 1:150.10", "A:2543384204;C:2224374632;G:2258183435;T:2515655339;N:442225", 150, 150, null, null, 2543384204, 2224374632, 2258183435, 2515655339, 442225, "DRX305187", "DRS231982", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.9528, 0.95591, 0.08656, 0.0828, 0.70352, 0.70331, 0.45316, 0.44914, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22704, "ERR961005", "ERX1038052", "ERS789977", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482573", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482573|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 96 sc 2204051|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCTAGGGAAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 96 sc 2204051|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#96", "12738363", "Illumina sequencing of library 12738363  constructed from sample accession ERS789977 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCTAGGGAAAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#96.cram", "cram", 14889180.0, 115420.0, "SC RUN 15298 1#96", "0:54 1:75", "A:3973400;C:3000662;G:4402270;T:3512848;N:0", 54, 75, null, null, 3973400, 3000662, 4402270, 3512848, 0, "ERX1038052", "ERS789977", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0003, 0.00741, 0.00028, 0.00599, 0.99997, 0.99997, 1.0, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22705, "ERR961004", "ERX1038051", "ERS789976", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482572", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482572|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 95 sc 2204050|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CAGAAAACCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 95 sc 2204050|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#95", "12738362", "Illumina sequencing of library 12738362  constructed from sample accession ERS789976 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CAGAAAACCCC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#95.cram", "cram", 19846134.0, 153846.0, "SC RUN 15298 1#95", "0:54 1:75", "A:5020027;C:3248457;G:6979506;T:4598140;N:4", 54, 75, null, null, 5020027, 3248457, 6979506, 4598140, 4, "ERX1038051", "ERS789976", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00018, 0.00811, 0.00017, 0.00589, 1.0, 0.99993, null, 0.66666, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22706, "ERR961003", "ERX1038050", "ERS789975", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482571", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:19:28Z|External Id:SAMEA3482571|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:19:28Z|INSDC status:public|Submitter Id:crest 1st 96 94 sc 2204049|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGAGTCACACG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 94 sc 2204049|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#94", "12738361", "Illumina sequencing of library 12738361  constructed from sample accession ERS789975 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGAGTCACACG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#94.cram", "cram", 24167118.0, 187342.0, "SC RUN 15298 1#94", "0:54 1:75", "A:6063633;C:4973842;G:8015996;T:5113647;N:0", 54, 75, null, null, 6063633, 4973842, 8015996, 5113647, 0, "ERX1038050", "ERS789975", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 7e-05, 0.00952, 6e-05, 0.00634, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22707, "ERR961002", "ERX1038049", "ERS789974", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482570", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482570|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 93 sc 2204048|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CCGGGCGGAGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 93 sc 2204048|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#93", "12738360", "Illumina sequencing of library 12738360  constructed from sample accession ERS789974 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CCGGGCGGAGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#93.cram", "cram", 11224032.0, 87008.0, "SC RUN 15298 1#93", "0:54 1:75", "A:2871437;C:2490429;G:3613666;T:2248500;N:0", 54, 75, null, null, 2871437, 2490429, 3613666, 2248500, 0, "ERX1038049", "ERS789974", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00032, 0.04075, 0.00031, 0.02886, 1.0, 0.99995, null, 0.42857, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22708, "ERR961001", "ERX1038048", "ERS789973", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482569", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482569|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 92 sc 2204047|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATGCGGGGCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 92 sc 2204047|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#92", "12738359", "Illumina sequencing of library 12738359  constructed from sample accession ERS789973 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATGCGGGGCGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#92.cram", "cram", 18725382.0, 145158.0, "SC RUN 15298 1#92", "0:54 1:75", "A:4587008;C:4553072;G:5882895;T:3702406;N:1", 54, 75, null, null, 4587008, 4553072, 5882895, 3702406, 1, "ERX1038048", "ERS789973", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00019, 0.02076, 0.00017, 0.00494, 0.99997, 0.99995, 0.0, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22709, "ERR961000", "ERX1038047", "ERS789972", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482568", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:19:28Z|External Id:SAMEA3482568|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:19:28Z|INSDC status:public|Submitter Id:crest 1st 96 91 sc 2204046|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAAACTACGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 91 sc 2204046|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#91", "12738358", "Illumina sequencing of library 12738358  constructed from sample accession ERS789972 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTAAACTACGA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#91.cram", "cram", 24251097.0, 187993.0, "SC RUN 15298 1#91", "0:54 1:75", "A:6954064;C:3962974;G:7798387;T:5535672;N:0", 54, 75, null, null, 6954064, 3962974, 7798387, 5535672, 0, "ERX1038047", "ERS789972", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00012, 0.00847, 0.00011, 0.00846, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22710, "ERR960999", "ERX1038046", "ERS789971", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGTATAAAACC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#46.cram", "cram", 5444316.0, 42204.0, "SC RUN 15298 1#46", "0:54 1:75", "A:1570912;C:936717;G:1677489;T:1259198;N:0", 54, 75, null, null, 1570912, 936717, 1677489, 1259198, 0, "ERX1038002", "ERS789927", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 9e-05, 0.00521, 8e-05, 0.0052, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22717, "ERR960954", "ERX1038001", "ERS789926", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TTGGACAGGGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#45.cram", "cram", 15920019.0, 123411.0, "SC RUN 15298 1#45", "0:54 1:75", "A:4324589;C:3284893;G:5029487;T:3281049;N:1", 54, 75, null, null, 4324589, 3284893, 5029487, 3281049, 1, "ERX1038001", "ERS789926", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00016, 0.00866, 0.00015, 0.00769, 1.0, 0.99997, null, 1.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22718, "ERR960953", "ERX1038000", "ERS789925", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TTCGCACCCGA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#43.cram", "cram", 75532338.0, 585522.0, "SC RUN 15298 1#43", "0:54 1:75", "A:20672274;C:12490010;G:26819622;T:15550432;N:0", 54, 75, null, null, 20672274, 12490010, 26819622, 15550432, 0, "ERX1037999", "ERS789924", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00019, 0.01159, 0.00018, 0.00709, 0.99997, 0.99993, 0.0, 0.16666, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22720, "ERR960951", "ERX1037998", "ERS789923", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTGAAGTGGAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#42.cram", "cram", 13327377.0, 103313.0, "SC RUN 15298 1#42", "0:54 1:75", "A:3578326;C:2841503;G:4056273;T:2851275;N:0", 54, 75, null, null, 3578326, 2841503, 4056273, 2851275, 0, "ERX1037998", "ERS789923", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00114, 0.05155, 0.00113, 0.02989, 1.0, 0.99993, null, 0.04761, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22721, "ERR960950", "ERX1037997", "ERS789922", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCACTGGGCGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#41.cram", "cram", 9867081.0, 76489.0, "SC RUN 15298 1#41", "0:54 1:75", "A:2514548;C:2124682;G:3285203;T:1942647;N:1", 54, 75, null, null, 2514548, 2124682, 3285203, 1942647, 1, "ERX1037997", "ERS789922", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00013, 0.0, 0.00012, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22722, "ERR960949", "ERX1037996", "ERS789921", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482517", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:19:09Z|External Id:SAMEA3482517|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:19:09Z|INSDC status:public|Submitter Id:crest 1st 96 40 sc 2203995|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CCTTGCGACAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 40 sc 2203995|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#40", "12738307", "Illumina sequencing of library 12738307  constructed from sample accession ERS789921 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CCTTGCGACAG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#40.cram", "cram", 245616.0, 1904.0, "SC RUN 15298 1#40", "0:54 1:75", "A:64778;C:48248;G:78655;T:53935;N:0", 54, 75, null, null, 64778, 48248, 78655, 53935, 0, "ERX1037996", "ERS789921", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22723, "ERR960948", "ERX1037995", "ERS789920", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482516", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482516|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 39 sc 2203994|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGGACAGAAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 39 sc 2203994|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#39", "12738306", "Illumina sequencing of library 12738306  constructed from sample accession ERS789920 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGGACAGAAGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#39.cram", "cram", 8002515.0, 62035.0, "SC RUN 15298 1#39", "0:54 1:75", "A:1871460;C:1976682;G:2395004;T:1759369;N:0", 54, 75, null, null, 1871460, 1976682, 2395004, 1759369, 0, "ERX1037995", "ERS789920", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00028, 0.05694, 0.00027, 0.04626, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22724, "ERR960947", "ERX1037994", "ERS789919", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GACGGCGCACA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#38.cram", "cram", 30916398.0, 239662.0, "SC RUN 15298 1#38", "0:54 1:75", "A:7211897;C:6504780;G:10679577;T:6520143;N:1", 54, 75, null, null, 7211897, 6504780, 10679577, 6520143, 1, "ERX1037994", "ERS789919", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00025, 0.02698, 0.00024, 0.02074, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22725, "ERR960946", "ERX1037993", "ERS789918", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482514", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482514|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 37 sc 2203992|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ACCGATCCAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 37 sc 2203992|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#37", "12738304", "Illumina sequencing of library 12738304  constructed from sample accession ERS789918 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACCGATCCAGA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#37.cram", "cram", 15428658.0, 119602.0, "SC RUN 15298 1#37", "0:54 1:75", "A:3843582;C:3067810;G:5200852;T:3316414;N:0", 54, 75, null, null, 3843582, 3067810, 5200852, 3316414, 0, "ERX1037993", "ERS789918", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00049, 0.00673, 0.00048, 0.00474, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22726, "ERR960945", "ERX1037992", "ERS789917", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482513", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482513|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 36 sc 2203991|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGGGGGAAGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 36 sc 2203991|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#36", "12738303", "Illumina sequencing of library 12738303  constructed from sample accession ERS789917 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGGGGGAAGCG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#36.cram", "cram", 7817658.0, 60602.0, "SC RUN 15298 1#36", "0:54 1:75", "A:1817429;C:2011017;G:2352660;T:1636552;N:0", 54, 75, null, null, 1817429, 2011017, 2352660, 1636552, 0, "ERX1037992", "ERS789917", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00022, 0.02117, 0.00021, 0.02116, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22727, "ERR960944", "ERX1037991", "ERS789916", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482512", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482512|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 35 sc 2203990|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATTCAAGGAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 35 sc 2203990|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#35", "12738302", "Illumina sequencing of library 12738302  constructed from sample accession ERS789916 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATTCAAGGAAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#35.cram", "cram", 43668048.0, 338512.0, "SC RUN 15298 1#35", "0:54 1:75", "A:12292955;C:8007180;G:12781695;T:10586215;N:3", 54, 75, null, null, 12292955, 8007180, 12781695, 10586215, 3, "ERX1037991", "ERS789916", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00011, 0.00903, 0.0001, 0.00849, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22780, "ERR960943", "ERX1037990", "ERS789915", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482511", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:19:09Z|External Id:SAMEA3482511|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:19:09Z|INSDC status:public|Submitter Id:crest 1st 96 34 sc 2203989|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGAAACGAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 34 sc 2203989|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#34", "12738301", "Illumina sequencing of library 12738301  constructed from sample accession ERS789915 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TCGAAACGAGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#34.cram", "cram", 11497899.0, 89131.0, "SC RUN 15298 1#34", "0:54 1:75", "A:2913172;C:2384082;G:3663956;T:2536689;N:0", 54, 75, null, null, 2913172, 2384082, 3663956, 2536689, 0, "ERX1037990", "ERS789915", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00031, 0.01887, 0.0003, 0.01729, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22781, "ERR960942", "ERX1037989", "ERS789914", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482510", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482510|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 33 sc 2203988|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GATACACCGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 33 sc 2203988|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#33", "12738300", "Illumina sequencing of library 12738300  constructed from sample accession ERS789914 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GATACACCGGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#33.cram", "cram", 50492406.0, 391414.0, "SC RUN 15298 1#33", "0:54 1:75", "A:13176590;C:9010462;G:17590800;T:10714554;N:0", 54, 75, null, null, 13176590, 9010462, 17590800, 10714554, 0, "ERX1037989", "ERS789914", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00013, 0.00647, 0.00012, 0.00574, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22782, "ERR960941", "ERX1037988", "ERS789913", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCGGGAAAGGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#32.cram", "cram", 27185589.0, 210741.0, "SC RUN 15298 1#32", "0:54 1:75", "A:6635817;C:6264964;G:8449157;T:5835651;N:0", 54, 75, null, null, 6635817, 6264964, 8449157, 5835651, 0, "ERX1037988", "ERS789913", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00022, 0.0113, 0.00021, 0.00736, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22783, "ERR960940", "ERX1037987", "ERS789912", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGGGACCCACC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#31.cram", "cram", 68348973.0, 529837.0, "SC RUN 15298 1#31", "0:54 1:75", "A:16243624;C:12893169;G:24780639;T:14431540;N:1", 54, 75, null, null, 16243624, 12893169, 24780639, 14431540, 1, "ERX1037987", "ERS789912", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0002, 0.0116, 0.00016, 0.00834, 0.99995, 0.99993, 1.0, 0.14285, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22784, "ERR960939", "ERX1037986", "ERS789911", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AACATTCACCA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#30.cram", "cram", 6248889.0, 48441.0, "SC RUN 15298 1#30", "0:54 1:75", "A:1686383;C:998733;G:2153427;T:1410345;N:1", 54, 75, null, null, 1686383, 998733, 2153427, 1410345, 1, "ERX1037986", "ERS789911", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00013, 0.01924, 0.00012, 0.01153, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22785, "ERR960938", "ERX1037985", "ERS789910", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CATCAGCGAAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#29.cram", "cram", 24479298.0, 189762.0, "SC RUN 15298 1#29", "0:54 1:75", "A:6221632;C:4435663;G:8413389;T:5408614;N:0", 54, 75, null, null, 6221632, 4435663, 8413389, 5408614, 0, "ERX1037985", "ERS789910", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00028, 0.04056, 0.00027, 0.04055, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22786, "ERR960937", "ERX1037984", "ERS789909", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGATCGCACAG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#28.cram", "cram", 17710023.0, 137287.0, "SC RUN 15298 1#28", "0:54 1:75", "A:4304665;C:3798740;G:5877092;T:3729526;N:0", 54, 75, null, null, 4304665, 3798740, 5877092, 3729526, 0, "ERX1037984", "ERS789909", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00024, 0.03618, 0.00023, 0.03085, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22787, "ERR960936", "ERX1037983", "ERS789908", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This submission includes reads tagged with the sequence GCCAAGGCGCC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#27.cram", "cram", 12727398.0, 98662.0, "SC RUN 15298 1#27", "0:54 1:75", "A:3106903;C:2551842;G:4424248;T:2644404;N:1", 54, 75, null, null, 3106903, 2551842, 4424248, 2644404, 1, "ERX1037983", "ERS789908", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 2e-05, 0.00325, 1e-05, 0.00324, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22788, "ERR960935", "ERX1037982", "ERS789907", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TCCCGGAGCCA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#26.cram", "cram", 2305488.0, 17872.0, "SC RUN 15298 1#26", "0:54 1:75", "A:580154;C:456146;G:790477;T:478710;N:1", 54, 75, null, null, 580154, 456146, 790477, 478710, 1, "ERX1037982", "ERS789907", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00094, 0.2184, 0.00093, 0.21839, 1.0, 1.0, null, null, 54, 75, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22789, "ERR960934", "ERX1037981", "ERS789906", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482502", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482502|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 25 sc 2203980|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTACGGGCCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 25 sc 2203980|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#25", "12738292", "Illumina sequencing of library 12738292  constructed from sample accession ERS789906 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTTACGGGCCG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#25.cram", "cram", 7033467.0, 54523.0, "SC RUN 15298 1#25", "0:54 1:75", "A:1688538;C:1670574;G:2282256;T:1392098;N:1", 54, 75, null, null, 1688538, 1670574, 2282256, 1392098, 1, "ERX1037981", "ERS789906", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 5e-05, 0.00379, 4e-05, 0.00378, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22790, "ERR960932", "ERX1037979", "ERS789904", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CTCCACGCAAG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#23.cram", "cram", 3354.0, 26.0, "SC RUN 15298 1#23", "0:54 1:75", "A:779;C:755;G:1090;T:730;N:0", 54, 75, null, null, 779, 755, 1090, 730, 0, "ERX1037979", "ERS789904", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", null, null, null, null, null, null, null, null, null, null, null, null, null, null, "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [22791, "ERR960931", "ERX1037978", "ERS789903", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482499", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482499|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 22 sc 2203977|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGCTTAAGAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 22 sc 2203977|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#22", "12738289", "Illumina sequencing of library 12738289  constructed from sample accession ERS789903 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGCTTAAGAGA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#22.cram", "cram", 26444226.0, 204994.0, "SC RUN 15298 1#22", "0:54 1:75", "A:7537534;C:5267799;G:7724442;T:5914446;N:5", 54, 75, null, null, 7537534, 5267799, 7724442, 5914446, 5, "ERX1037978", "ERS789903", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00012, 0.00941, 0.00011, 0.0047, 1.0, 0.99995, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23457, "ERR960994", "ERX1038041", "ERS789966", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGACCGTGGAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#85.cram", "cram", 20532285.0, 159165.0, "SC RUN 15298 1#85", "0:54 1:75", "A:5182290;C:4250086;G:6745863;T:4354046;N:0", 54, 75, null, null, 5182290, 4250086, 6745863, 4354046, 0, "ERX1038041", "ERS789966", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00034, 0.06061, 0.00033, 0.02635, 1.0, 0.99995, null, 0.03846, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23458, "ERR960993", "ERX1038040", "ERS789965", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCCCACACCGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#84.cram", "cram", 20814537.0, 161353.0, "SC RUN 15298 1#84", "0:54 1:75", "A:5039242;C:3899489;G:7621553;T:4254251;N:2", 54, 75, null, null, 5039242, 3899489, 7621553, 4254251, 2, "ERX1038040", "ERS789965", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00014, 0.01459, 0.00013, 0.00729, 1.0, 0.99995, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23459, "ERR960992", "ERX1038039", "ERS789964", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATCGCATAGCG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#83.cram", "cram", 20918511.0, 162159.0, "SC RUN 15298 1#83", "0:54 1:75", "A:5552893;C:3952443;G:6941827;T:4471347;N:1", 54, 75, null, null, 5552893, 3952443, 6941827, 4471347, 1, "ERX1038039", "ERS789964", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0001, 0.01323, 8e-05, 0.01017, 0.99997, 0.99997, 0.0, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23460, "ERR960991", "ERX1038038", "ERS789963", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CGATAAAACGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#82.cram", "cram", 40148799.0, 311231.0, "SC RUN 15298 1#82", "0:54 1:75", "A:11158281;C:6748555;G:12906092;T:9335869;N:2", 54, 75, null, null, 11158281, 6748555, 12906092, 9335869, 2, "ERX1038038", "ERS789963", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00011, 0.00423, 0.0001, 0.00343, 1.0, 0.99995, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23461, "ERR960990", "ERX1038037", "ERS789962", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGAAATGGAGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#81.cram", "cram", 18901596.0, 146524.0, "SC RUN 15298 1#81", "0:54 1:75", "A:4646285;C:3993030;G:5886824;T:4375456;N:1", 54, 75, null, null, 4646285, 3993030, 5886824, 4375456, 1, "ERX1038037", "ERS789962", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 5e-05, 0.00301, 4e-05, 0.001, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23462, "ERR960989", "ERX1038036", "ERS789961", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTCCCACGAAG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#80.cram", "cram", 20527125.0, 159125.0, "SC RUN 15298 1#80", "0:54 1:75", "A:5171194;C:3982656;G:6965832;T:4407443;N:0", 54, 75, null, null, 5171194, 3982656, 6965832, 4407443, 0, "ERX1038036", "ERS789961", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0002, 0.016, 0.00019, 0.01094, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23463, "ERR960988", "ERX1038035", "ERS789960", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCGCCATGGGA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#79.cram", "cram", 2488797.0, 19293.0, "SC RUN 15298 1#79", "0:54 1:75", "A:619436;C:544485;G:810480;T:514395;N:1", 54, 75, null, null, 619436, 544485, 810480, 514395, 1, "ERX1038035", "ERS789960", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00019, 0.0, 0.00018, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23464, "ERR960987", "ERX1038034", "ERS789959", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482555", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482555|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 78 sc 2204033|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGAGCCCGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 78 sc 2204033|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#78", "12738345", "Illumina sequencing of library 12738345  constructed from sample accession ERS789959 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TAGAGCCCGCC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#78.cram", "cram", 14158782.0, 109758.0, "SC RUN 15298 1#78", "0:54 1:75", "A:3556811;C:2613685;G:5029335;T:2958951;N:0", 54, 75, null, null, 3556811, 2613685, 5029335, 2958951, 0, "ERX1038034", "ERS789959", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00016, 0.00293, 0.00015, 0.00292, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23465, "ERR960986", "ERX1038033", "ERS789958", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CTAAATACAGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#77.cram", "cram", 35801757.0, 277533.0, "SC RUN 15298 1#77", "0:54 1:75", "A:10359476;C:5705406;G:11411528;T:8325347;N:0", 54, 75, null, null, 10359476, 5705406, 11411528, 8325347, 0, "ERX1038033", "ERS789958", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 6e-05, 0.00267, 5e-05, 0.00221, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23466, "ERR960985", "ERX1038032", "ERS789957", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482553", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482553|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 76 sc 2204031|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATACCAAGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 76 sc 2204031|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#76", "12738343", "Illumina sequencing of library 12738343  constructed from sample accession ERS789957 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TATACCAAGAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#76.cram", "cram", 32031087.0, 248303.0, "SC RUN 15298 1#76", "0:54 1:75", "A:8964675;C:5487121;G:9932429;T:7646862;N:0", 54, 75, null, null, 8964675, 5487121, 9932429, 7646862, 0, "ERX1038032", "ERS789957", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00024, 0.003, 0.00022, 0.00209, 0.99997, 0.99995, 1.0, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23467, "ERR960984", "ERX1038031", "ERS789956", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482552", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482552|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 75 sc 2204030|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGTTACGAGGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 75 sc 2204030|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#75", "12738342", "Illumina sequencing of library 12738342  constructed from sample accession ERS789956 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGTTACGAGGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#75.cram", "cram", 21506364.0, 166716.0, "SC RUN 15298 1#75", "0:54 1:75", "A:5612685;C:4593888;G:6734838;T:4564952;N:1", 54, 75, null, null, 5612685, 4593888, 6734838, 4564952, 1, "ERX1038031", "ERS789956", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00025, 0.03013, 0.00024, 0.02259, 1.0, 0.99995, null, 0.8, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23468, "ERR960983", "ERX1038030", "ERS789955", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482551", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482551|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 74 sc 2204029|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCAGTACAAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 74 sc 2204029|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#74", "12738341", "Illumina sequencing of library 12738341  constructed from sample accession ERS789955 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TCCAGTACAAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#74.cram", "cram", 14122275.0, 109475.0, "SC RUN 15298 1#74", "0:54 1:75", "A:3884298;C:2411666;G:4724071;T:3102240;N:0", 54, 75, null, null, 3884298, 2411666, 4724071, 3102240, 0, "ERX1038030", "ERS789955", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0007, 0.19231, 0.00069, 0.14903, 1.0, 0.99997, null, 0.0, 54, 75, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23469, "ERR960982", "ERX1038029", "ERS789954", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482550", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482550|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 73 sc 2204028|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCATCAGCGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 73 sc 2204028|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#73", "12738340", "Illumina sequencing of library 12738340  constructed from sample accession ERS789954 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCATCAGCGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#73.cram", "cram", 22589964.0, 175116.0, "SC RUN 15298 1#73", "0:54 1:75", "A:5982465;C:4299951;G:7659219;T:4648329;N:0", 54, 75, null, null, 5982465, 4299951, 7659219, 4648329, 0, "ERX1038029", "ERS789954", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00024, 0.01815, 0.00023, 0.017, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23470, "ERR960930", "ERX1037977", "ERS789902", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482498", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482498|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 21 sc 2203976|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AAAGAATCGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 21 sc 2203976|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#21", "12738288", "Illumina sequencing of library 12738288  constructed from sample accession ERS789902 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AAAGAATCGCC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#21.cram", "cram", 13029.0, 101.0, "SC RUN 15298 1#21", "0:54 1:75", "A:3504;C:1964;G:4101;T:3460;N:0", 54, 75, null, null, 3504, 1964, 4101, 3460, 0, "ERX1037977", "ERS789902", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23471, "ERR960927", "ERX1037974", "ERS789899", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482495", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482495|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 18 sc 2203973|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCAATTAGGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 18 sc 2203973|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#18", "12738285", "Illumina sequencing of library 12738285  constructed from sample accession ERS789899 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCAATTAGGAG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#18.cram", "cram", 387.0, 3.0, "SC RUN 15298 1#18", "0:54 1:75", "A:105;C:65;G:121;T:96;N:0", 54, 75, null, null, 105, 65, 121, 96, 0, "ERX1037974", "ERS789899", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", null, null, null, null, null, null, null, null, null, null, null, null, null, null, "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23472, "ERR960923", "ERX1037970", "ERS789895", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482491", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:53:18Z|External Id:SAMEA3482491|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:53:18Z|INSDC status:public|Submitter Id:crest 1st 96 14 sc 2203969|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGGTGAGAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 14 sc 2203969|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#14", "12738281", "Illumina sequencing of library 12738281  constructed from sample accession ERS789895 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TAGGTGAGAAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#14.cram", "cram", 7095.0, 55.0, "SC RUN 15298 1#14", "0:54 1:75", "A:1662;C:1902;G:1378;T:2153;N:0", 54, 75, null, null, 1662, 1902, 1378, 2153, 0, "ERX1037970", "ERS789895", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23473, "ERR960921", "ERX1037968", "ERS789893", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482489", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482489|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 12 sc 2203967|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGTACTACGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 12 sc 2203967|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#12", "12738279", "Illumina sequencing of library 12738279  constructed from sample accession ERS789893 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGTACTACGCG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#12.cram", "cram", 31079196.0, 240924.0, "SC RUN 15298 1#12", "0:54 1:75", "A:8578418;C:5741067;G:10187601;T:6572110;N:0", 54, 75, null, null, 8578418, 5741067, 10187601, 6572110, 0, "ERX1037968", "ERS789893", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 8e-05, 0.00727, 7e-05, 0.00545, 1.0, 0.99993, null, 0.66666, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23474, "ERR960920", "ERX1037967", "ERS789892", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482488", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:39Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482488|INSDC center name:SC|INSDC first public:2015 07 13T15:15:39Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 11 sc 2203966|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ACGAGACACCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 11 sc 2203966|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#11", "12738278", "Illumina sequencing of library 12738278  constructed from sample accession ERS789892 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACGAGACACCC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#11.cram", "cram", 96621.0, 749.0, "SC RUN 15298 1#11", "0:54 1:75", "A:22107;C:18689;G:35107;T:20718;N:0", 54, 75, null, null, 22107, 18689, 35107, 20718, 0, "ERX1037967", "ERS789892", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23475, "ERR960919", "ERX1037966", "ERS789891", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482487", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:53:18Z|External Id:SAMEA3482487|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:53:18Z|INSDC status:public|Submitter Id:crest 1st 96 10 sc 2203965|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CATAATGGCGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 10 sc 2203965|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#10", "12738277", "Illumina sequencing of library 12738277  constructed from sample accession ERS789891 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CATAATGGCGA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#10.cram", "cram", 24001482.0, 186058.0, "SC RUN 15298 1#10", "0:54 1:75", "A:6651632;C:4678282;G:7409968;T:5261600;N:0", 54, 75, null, null, 6651632, 4678282, 7409968, 5261600, 0, "ERX1037966", "ERS789891", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00017, 0.01188, 0.00016, 0.00965, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23476, "ERR960918", "ERX1037965", "ERS789890", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482486", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482486|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 9 sc 2203964|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACCTAACGCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 9 sc 2203964|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#9", "12738276", "Illumina sequencing of library 12738276  constructed from sample accession ERS789890 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TACCTAACGCA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#9.cram", "cram", 28715658.0, 222602.0, "SC RUN 15298 1#9", "0:54 1:75", "A:8157133;C:4773463;G:9572391;T:6212671;N:0", 54, 75, null, null, 8157133, 4773463, 9572391, 6212671, 0, "ERX1037965", "ERS789890", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 8e-05, 0.01671, 7e-05, 0.0089, 1.0, 0.99995, null, 0.14285, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23568, "ERR960981", "ERX1038028", "ERS789953", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTCTAGACAAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#72.cram", "cram", 13198893.0, 102317.0, "SC RUN 15298 1#72", "0:54 1:75", "A:3719906;C:2379996;G:4068928;T:3030063;N:0", 54, 75, null, null, 3719906, 2379996, 4068928, 3030063, 0, "ERX1038028", "ERS789953", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00037, 0.01725, 0.00036, 0.01465, 1.0, 0.99995, null, 0.33333, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23569, "ERR960980", "ERX1038027", "ERS789952", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482548", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482548|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 71 sc 2204026|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CTGTGGCCCCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 71 sc 2204026|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#71", "12738338", "Illumina sequencing of library 12738338  constructed from sample accession ERS789952 for study accession ERP011007.  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This submission includes reads tagged with the sequence CTGTGGCCCCG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#71.cram", "cram", 5505462.0, 42678.0, "SC RUN 15298 1#71", "0:54 1:75", "A:1362048;C:1171299;G:1902386;T:1069729;N:0", 54, 75, null, null, 1362048, 1171299, 1902386, 1069729, 0, "ERX1038027", "ERS789952", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00042, 0.00871, 0.00041, 0.00435, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23570, "ERR960979", "ERX1038026", "ERS789951", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCCGCTGAAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#70.cram", "cram", 19425207.0, 150583.0, "SC RUN 15298 1#70", "0:54 1:75", "A:4779161;C:3953708;G:6541023;T:4151315;N:0", 54, 75, null, null, 4779161, 3953708, 6541023, 4151315, 0, "ERX1038026", "ERS789951", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00025, 0.02849, 0.00024, 0.02056, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23571, "ERR960978", "ERX1038025", "ERS789950", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACCTCCAACCC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#69.cram", "cram", 28993653.0, 224757.0, "SC RUN 15298 1#69", "0:54 1:75", "A:7207182;C:4370289;G:11297647;T:6118535;N:0", 54, 75, null, null, 7207182, 4370289, 11297647, 6118535, 0, "ERX1038025", "ERS789950", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00012, 0.00879, 0.00011, 0.00763, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23572, "ERR960977", "ERX1038024", "ERS789949", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCGTCCACACA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#68.cram", "cram", 20277123.0, 157187.0, "SC RUN 15298 1#68", "0:54 1:75", "A:4893608;C:3840767;G:7245378;T:4297370;N:0", 54, 75, null, null, 4893608, 3840767, 7245378, 4297370, 0, "ERX1038024", "ERS789949", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0001, 0.01152, 9e-05, 0.0, 1.0, 0.99995, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23573, "ERR960976", "ERX1038023", "ERS789948", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AATCGTAGCCG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#67.cram", "cram", 19866129.0, 154001.0, "SC RUN 15298 1#67", "0:54 1:75", "A:5307815;C:3777242;G:6536078;T:4244993;N:1", 54, 75, null, null, 5307815, 3777242, 6536078, 4244993, 1, "ERX1038023", "ERS789948", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00017, 0.01078, 0.00016, 0.00489, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23574, "ERR960975", "ERX1038022", "ERS789947", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482543", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482543|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 66 sc 2204021|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACCTCCCAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 66 sc 2204021|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#66", "12738333", "Illumina sequencing of library 12738333  constructed from sample accession ERS789947 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TACCTCCCAGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#66.cram", "cram", 40157055.0, 311295.0, "SC RUN 15298 1#66", "0:54 1:75", "A:9958996;C:7670132;G:14438018;T:8089908;N:1", 54, 75, null, null, 9958996, 7670132, 14438018, 8089908, 1, "ERX1038022", "ERS789947", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 5e-05, 0.00035, 4e-05, 0.00029, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23575, "ERR960974", "ERX1038021", "ERS789946", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TAGGCTAAAGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#65.cram", "cram", 21958122.0, 170218.0, "SC RUN 15298 1#65", "0:54 1:75", "A:6091716;C:4409837;G:6578733;T:4877835;N:1", 54, 75, null, null, 6091716, 4409837, 6578733, 4877835, 1, "ERX1038021", "ERS789946", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00039, 0.04871, 0.00038, 0.02287, 1.0, 0.99987, null, 0.05714, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23576, "ERR960973", "ERX1038020", "ERS789945", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482541", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482541|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 64 sc 2204019|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGCCGCCAGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 64 sc 2204019|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#64", "12738331", "Illumina sequencing of library 12738331  constructed from sample accession ERS789945 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTGCCGCCAGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#64.cram", "cram", 4336335.0, 33615.0, "SC RUN 15298 1#64", "0:54 1:75", "A:1008355;C:951372;G:1505081;T:871526;N:1", 54, 75, null, null, 1008355, 951372, 1505081, 871526, 1, "ERX1038020", "ERS789945", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0015, 0.05568, 0.00149, 0.04454, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23577, "ERR960972", "ERX1038019", "ERS789944", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482540", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482540|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 63 sc 2204018|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGAACTCAGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 63 sc 2204018|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#63", "12738330", "Illumina sequencing of library 12738330  constructed from sample accession ERS789944 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGAACTCAGAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#63.cram", "cram", 3370383.0, 26127.0, "SC RUN 15298 1#63", "0:54 1:75", "A:825139;C:661130;G:1081655;T:802458;N:1", 54, 75, null, null, 825139, 661130, 1081655, 802458, 1, "ERX1038019", "ERS789944", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00045, 0.00232, 0.00044, 0.00231, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23578, "ERR960971", "ERX1038018", "ERS789943", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482539", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482539|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 62 sc 2204017|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGTGCTCCACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 62 sc 2204017|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#62", "12738329", "Illumina sequencing of library 12738329  constructed from sample accession ERS789943 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGTGCTCCACA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#62.cram", "cram", 899259.0, 6971.0, "SC RUN 15298 1#62", "0:54 1:75", "A:223754;C:181507;G:305380;T:188618;N:0", 54, 75, null, null, 223754, 181507, 305380, 188618, 0, "ERX1038018", "ERS789943", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00152, 0.0, 0.00151, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23579, "ERR960970", "ERX1038017", "ERS789942", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482538", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482538|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 61 sc 2204016|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCAGCCACAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 61 sc 2204016|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#61", "12738328", "Illumina sequencing of library 12738328  constructed from sample accession ERS789942 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCAGCCACAG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#61.cram", "cram", 3164499.0, 24531.0, "SC RUN 15298 1#61", "0:54 1:75", "A:766059;C:658494;G:1063345;T:676600;N:1", 54, 75, null, null, 766059, 658494, 1063345, 676600, 1, "ERX1038017", "ERS789942", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0004, 0.09678, 0.00039, 0.03763, 1.0, 0.99997, null, 0.0, 54, 75, "T", "B", "mate1 technical by mapping diff", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23580, "ERR960969", "ERX1038016", "ERS789941", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482537", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482537|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 60 sc 2204015|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CGCATACGGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 60 sc 2204015|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#60", "12738327", "Illumina sequencing of library 12738327  constructed from sample accession ERS789941 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CGCATACGGAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#60.cram", "cram", 13108206.0, 101614.0, "SC RUN 15298 1#60", "0:54 1:75", "A:3446999;C:2515621;G:4266688;T:2878895;N:3", 54, 75, null, null, 3446999, 2515621, 4266688, 2878895, 3, "ERX1038016", "ERS789941", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00029, 0.02651, 0.00028, 0.02503, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23581, "ERR960917", "ERX1037964", "ERS789889", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482485", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482485|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 8 sc 2203963|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CAACGCCAAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 8 sc 2203963|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#8", "12738275", "Illumina sequencing of library 12738275  constructed from sample accession ERS789889 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CAACGCCAAAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#8.cram", "cram", 8936733.0, 69277.0, "SC RUN 15298 1#8", "0:54 1:75", "A:2201849;C:1591061;G:2984901;T:2158922;N:0", 54, 75, null, null, 2201849, 1591061, 2984901, 2158922, 0, "ERX1037964", "ERS789889", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0002, 0.01794, 0.00019, 0.01569, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23582, "ERR960916", "ERX1037963", "ERS789888", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482484", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482484|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 7 sc 2203962|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGGCTCCGACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 7 sc 2203962|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#7", "12738274", "Illumina sequencing of library 12738274  constructed from sample accession ERS789888 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGGCTCCGACA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#7.cram", "cram", 12373293.0, 95917.0, "SC RUN 15298 1#7", "0:54 1:75", "A:2949521;C:2636465;G:4216034;T:2571272;N:1", 54, 75, null, null, 2949521, 2636465, 4216034, 2571272, 1, "ERX1037963", "ERS789888", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00019, 0.00361, 0.00018, 0.00288, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23583, "ERR960915", "ERX1037962", "ERS789887", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482483", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482483|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 6 sc 2203961|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGGAACTACAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 6 sc 2203961|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#6", "12738273", "Illumina sequencing of library 12738273  constructed from sample accession ERS789887 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGGAACTACAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#6.cram", "cram", 33180993.0, 257217.0, "SC RUN 15298 1#6", "0:54 1:75", "A:8481490;C:6072343;G:11085635;T:7541524;N:1", 54, 75, null, null, 8481490, 6072343, 11085635, 7541524, 1, "ERX1037962", "ERS789887", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 8e-05, 0.00423, 5e-05, 0.00422, 0.99995, 1.0, 0.5, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23584, "ERR960914", "ERX1037961", "ERS789886", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482482", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482482|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 5 sc 2203960|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GAGTCGCGACG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 5 sc 2203960|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#5", "12738272", "Illumina sequencing of library 12738272  constructed from sample accession ERS789886 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GAGTCGCGACG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#5.cram", "cram", 4597302.0, 35638.0, "SC RUN 15298 1#5", "0:54 1:75", "A:1143776;C:1020979;G:1487209;T:945338;N:0", 54, 75, null, null, 1143776, 1020979, 1487209, 945338, 0, "ERX1037961", "ERS789886", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23585, "ERR960913", "ERX1037960", "ERS789885", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482481", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:53:18Z|External Id:SAMEA3482481|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:53:18Z|INSDC status:public|Submitter Id:crest 1st 96 4 sc 2203959|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CAGGTGACGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 4 sc 2203959|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#4", "12738271", "Illumina sequencing of library 12738271  constructed from sample accession ERS789885 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CAGGTGACGGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#4.cram", "cram", 37264875.0, 288875.0, "SC RUN 15298 1#4", "0:54 1:75", "A:9589177;C:8131578;G:11983517;T:7560602;N:1", 54, 75, null, null, 9589177, 8131578, 11983517, 7560602, 1, "ERX1037960", "ERS789885", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 8e-05, 0.00279, 7e-05, 0.00278, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23586, "ERR960912", "ERX1037959", "ERS789884", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482480", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482480|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 3 sc 2203958|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AACCACAGCAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 3 sc 2203958|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#3", "12738270", "Illumina sequencing of library 12738270  constructed from sample accession ERS789884 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AACCACAGCAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#3.cram", "cram", 32730912.0, 253728.0, "SC RUN 15298 1#3", "0:54 1:75", "A:8396078;C:6363868;G:10313115;T:7657833;N:18", 54, 75, null, null, 8396078, 6363868, 10313115, 7657833, 18, "ERX1037959", "ERS789884", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00068, 0.06344, 0.00067, 0.05099, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23587, "ERR960911", "ERX1037958", "ERS789883", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.", null, null, null, null, "SAMEA3482479", "SC", "age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482479|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 2 sc 2203957|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GACAAAGAGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 2 sc 2203957|scientific name:Danio rerio|strain:H/LF", null, null, null, null, null, null, null, null, "Illumina MiSeq paired end sequencing", "SC EXP 15298 1#2", "12738269", "Illumina sequencing of library 12738269  constructed from sample accession ERS789883 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GACAAAGAGAA.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#2.cram", "cram", 434085.0, 3365.0, "SC RUN 15298 1#2", "0:54 1:75", "A:102896;C:91472;G:130311;T:109406;N:0", 54, 75, null, null, 102896, 91472, 130311, 109406, 0, "ERX1037958", "ERS789883", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [23588, "ERR960910", "ERX1037957", "ERS789882", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This submission includes reads tagged with the sequence AACCTTGAGGG.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#53.cram", "cram", 17456667.0, 135323.0, "SC RUN 15298 1#53", "0:54 1:75", "A:4566322;C:3655656;G:5535047;T:3699642;N:0", 54, 75, null, null, 4566322, 3655656, 5535047, 3699642, 0, "ERX1038009", "ERS789934", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 5e-05, 0.00816, 4e-05, 0.00271, 1.0, 0.99997, null, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [24181, "ERR960961", "ERX1038008", "ERS789933", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This submission includes reads tagged with the sequence AGCAGGGACGC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#52.cram", "cram", 12276801.0, 95169.0, "SC RUN 15298 1#52", "0:54 1:75", "A:3069089;C:2664981;G:3953559;T:2589172;N:0", 54, 75, null, null, 3069089, 2664981, 3953559, 2589172, 0, "ERX1038008", "ERS789933", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 9e-05, 0.00598, 8e-05, 0.00597, 1.0, 1.0, null, null, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [24182, "ERR960960", "ERX1038007", "ERS789932", "ERP011007", "PRJEB9859", "Transcriptome profiling of single zebrafish cells", "Transcriptome_profiling_of_single_zebrafish_cells-sc-2991", "Transcriptome Analysis", "Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. 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This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACAGGGGCAAC.", "Transcriptome counting qPCR only", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina MiSeq", null, "ERP011007", "Illumina MiSeq paired end sequencing", "ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16", "15298_1#51.cram", "cram", 9057735.0, 70215.0, "SC RUN 15298 1#51", "0:54 1:75", "A:2194761;C:1924623;G:2948434;T:1989917;N:0", 54, 75, null, null, 2194761, 1924623, 2948434, 1989917, 0, "ERX1038007", "ERS789932", "ERA457908", "The Wellcome Trust Sanger Institute|European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.00037, 0.04356, 0.00022, 0.02613, 0.99997, 0.99997, 1.0, 0.0, 54, 75, "T", "T", "mates < 9% mapping rate", "illumina", "miseq", "3prime", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2015-07-13", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"]], "truncated": false, "filtered_table_rows_count": 157, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", 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