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To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "wildtype sibling sample1", "SAMD00400820", null, "sample name:rw147 2.5dpf wildtype  rep 1|biological replicate:1", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400820", "DRX305191", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400820", null, null, null, 10491955578.0, 34900682.0, "DRR315799", "0:150.34 1:150.28", "A:2796521111;C:2446218287;G:2483414564;T:2765477785;N:323831", 150, 150, null, null, 2796521111, 2446218287, 2483414564, 2765477785, 323831, "DRX305191", "DRS231986", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.9539, 0.95646, 0.08185, 0.07808, 0.70025, 0.70013, 0.44713, 0.44987, 150, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [10, "DRR315798", "DRX305190", "DRS231985", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample4", "SAMD00400819", null, "sample name:rw147 2.5dpf Mutant  rep 4|biological replicate:4", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400819", "DRX305190", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400819", null, null, null, 9197802250.0, 30604326.0, "DRR315798", "0:150.30 1:150.24", "A:2468967963;C:2130949980;G:2158692262;T:2438931017;N:261028", 150, 150, null, null, 2468967963, 2130949980, 2158692262, 2438931017, 261028, "DRX305190", "DRS231985", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95159, 0.95439, 0.10146, 0.09758, 0.71995, 0.71983, 0.46519, 0.46797, 150, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [11, "DRR315797", "DRX305189", "DRS231984", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample3", "SAMD00400818", null, "sample name:rw147 2.5dpf Mutant  rep 3|biological replicate:3", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400818", "DRX305189", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400818", null, null, null, 10498982078.0, 34931731.0, "DRR315797", "0:150.31 1:150.25", "A:2804535103;C:2445295179;G:2478768789;T:2770066062;N:316945", 150, 150, null, null, 2804535103, 2445295179, 2478768789, 2770066062, 316945, "DRX305189", "DRS231984", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95448, 0.95652, 0.0939, 0.0887, 0.71796, 0.71847, 0.46335, 0.46615, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [12, "DRR315796", "DRX305188", "DRS231983", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample2", "SAMD00400817", null, "sample name:rw147 2.5dpf Mutant  rep 2|biological replicate:2", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400817", "DRX305188", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400817", null, null, null, 9850145990.0, 32782079.0, "DRR315796", "0:150.26 1:150.21", "A:2636205537;C:2286508705;G:2319481100;T:2607600624;N:350024", 150, 150, null, null, 2636205537, 2286508705, 2319481100, 2607600624, 350024, "DRX305188", "DRS231983", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.95193, 0.95472, 0.09722, 0.09375, 0.7138, 0.71299, 0.45542, 0.45994, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [13, "DRR315795", "DRX305187", "DRS231982", "DRP008318", "PRJDB12206", "Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes", "DRP008318", "Transcriptome Analysis", "Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant \"rw147\" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.", null, null, null, "strip1 mutant sample1", "SAMD00400816", null, "sample name:rw147 2.5dpf Mutant  rep 1|biological replicate:1", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00400816", "DRX305187", "1", "1", "1", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008318", "Illumina NovaSeq 6000 paired end sequencing of SAMD00400816", null, null, null, 9542039835.0, 31780260.0, "DRR315795", "0:150.15 1:150.10", "A:2543384204;C:2224374632;G:2258183435;T:2515655339;N:442225", 150, 150, null, null, 2543384204, 2224374632, 2258183435, 2515655339, 442225, "DRX305187", "DRS231982", "DRA012640", "OIST|Developmental Neurobiology Unit", "Developmental Neurobiology Unit", 2, 0.9528, 0.95591, 0.08656, 0.0828, 0.70352, 0.70331, 0.45316, 0.44914, 151, 151, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "bulk", "bulk", null, "Unknown", "2022-03-16", "Hatching", "Embryo", "Undetermined", "Embryo Imprecise"], [79, "DRR032745", "DRX029551", "DRS049950", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 60h 2", "SAMD00028142", null, "sample name:Dr 60h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male  female  and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028142", "DRX029551", "Dr 60h 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028142", null, null, null, 3875337000.0, 38753370.0, "DRR032745", "0:100 1:0", "A:1042558903;C:899892111;G:896867583;T:1035981420;N:36983", 100, 0, null, null, 1042558903, 899892111, 896867583, 1035981420, 36983, "DRX029551", "DRS049950", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.91891, null, 0.09445, null, 0.66156, null, 0.45564, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [80, "DRR032744", "DRX029550", "DRS049949", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 60h 1", "SAMD00028141", null, "sample name:Dr 60h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male  female  and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028141", "DRX029550", "Dr 60h 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028141", null, null, null, 3538468200.0, 35384682.0, "DRR032744", "0:100 1:0", "A:960664313;C:812459988;G:809014008;T:956295205;N:34686", 100, 0, null, null, 960664313, 812459988, 809014008, 956295205, 34686, "DRX029550", "DRS049949", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.91388, null, 0.10346, null, 0.66076, null, 0.45203, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [84, "DRR032740", "DRX029546", "DRS049945", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 48h 2", "SAMD00028137", null, "sample name:Dr 48h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male  female  and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028137", "DRX029546", "Dr 48h 2", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028137", null, null, null, 3702804700.0, 37028047.0, "DRR032740", "0:100 1:0", "A:993931475;C:862403562;G:857808891;T:988623734;N:37038", 100, 0, null, null, 993931475, 862403562, 857808891, 988623734, 37038, "DRX029546", "DRS049945", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92508, null, 0.08526, null, 0.68349, null, 0.45769, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [85, "DRR032739", "DRX029545", "DRS049944", "DRP003810", "PRJDB3785", "EXPANDE project", "DRP003810", "Other", "EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.", null, null, "mRNA extracted from pooled embryos of 50 individuals", "Dr 48h 1", "SAMD00028136", null, "sample name:Dr 48h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male  female  and mixed", null, null, null, null, null, null, null, null, "Illumina HiSeq 2000 sequencing of SAMD00028136", "DRX029545", "Dr 48h 1", "1", "Total RNA QIAGEN RNeasy followed by TruSeq", null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP003810", "Illumina HiSeq 2000 sequencing of SAMD00028136", null, null, null, 3980240400.0, 39802404.0, "DRR032739", "0:100 1:0", "A:1070497788;C:925240883;G:920038728;T:1064422474;N:40527", 100, 0, null, null, 1070497788, 925240883, 920038728, 1064422474, 40527, "DRX029545", "DRS049944", "DRA003460", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", "UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo", 1, 0.92349, null, 0.08681, null, 0.67874, null, 0.46565, null, 100, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2017-09-20", "Hatching", "Embryo", "Whole Organism", "All anatomical structures"], [303, "DRR224539", "DRX214824", "DRS236347", "DRP008458", "PRJDB9741", "RNA seq for developing pectoral fin in zebrafish", "DRP008458", "Other", "From the developmental view of fin to limb transition  an important event in vertebrate evolution  we seek fish specific genes that show characteristic expression pattern in the developing fin.", null, null, null, "pectoral fin bud from gM1116A zebrafish at 48hpf C", "SAMD00222570", null, "sample name:48hpf C", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00222570", "DRX214824", "48hpf C", "1", "Illumina TruSeq Stranded mRNA Library Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008458", "Illumina NovaSeq 6000 paired end sequencing of SAMD00222570", null, null, null, 16828182200.0, 84140911.0, "DRR224539", "0:100 1:100", "A:3957959900;C:4467368792;G:4483580218;T:3919146988;N:126302", 100, 100, null, null, 3957959900, 4467368792, 4483580218, 3919146988, 126302, "DRX214824", "DRS236347", "DRA010086", "TOHOKUGL|Laboratory of organ morphogenesis", "Graduate School of Life Sciences, Tohoku University", 2, 0.97277, 0.97115, 0.05409, 0.05185, 0.76717, 0.76836, 0.46592, 0.45571, 100, 100, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "trueseq", "bulk", "unknown", "unknown", null, "Japan", "2022-04-21", "Hatching", "Embryo", "Fin", "Surface Structure"], [304, "DRR224538", "DRX214823", "DRS236346", "DRP008458", "PRJDB9741", "RNA seq for developing pectoral fin in zebrafish", "DRP008458", "Other", "From the developmental view of fin to limb transition  an important event in vertebrate evolution  we seek fish specific genes that show characteristic expression pattern in the developing fin.", null, null, null, "pectoral fin bud from gM1116A zebrafish at 48hpf B", "SAMD00222569", null, "sample name:48hpf B", null, null, null, null, null, null, null, null, "Illumina NovaSeq 6000 paired end sequencing of SAMD00222569", "DRX214823", "48hpf B", "1", "Illumina TruSeq Stranded mRNA Library Prep Kit", null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "DRP008458", "Illumina NovaSeq 6000 paired end sequencing of SAMD00222569", null, null, null, 22815822200.0, 114079111.0, "DRR224538", "0:100 1:100", "A:5651922913;C:5760379580;G:5844694518;T:5558658503;N:166686", 100, 100, null, null, 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This submission includes reads tagged with the sequence GATTCATC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#95.cram", "cram", 364024650.0, 2426831.0, "SC RUN 21115 7#95", "0:75 1:75", "A:95916965;C:85606514;G:85201716;T:97272921;N:26534", 75, 75, null, null, 95916965, 85606514, 85201716, 97272921, 26534, "ERX1884481", "ERS1343315", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95308, 0.9573, 0.12802, 0.12464, 0.68114, 0.6817, 0.4667, 0.47686, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1345, "ERR1821988", "ERX1884480", "ERS1343314", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 10", "SAMEA4431865", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#94", "DN465656V:F12", "Illumina sequencing of library DN465656V:F12  constructed from sample accession ERS1343314 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  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This submission includes reads tagged with the sequence GCACTGTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#93.cram", "cram", 351364950.0, 2342433.0, "SC RUN 21115 7#93", "0:75 1:75", "A:90109745;C:84916907;G:84829295;T:91484844;N:24159", 75, 75, null, null, 90109745, 84916907, 84829295, 91484844, 24159, "ERX1884479", "ERS1343313", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96367, 0.96715, 0.12608, 0.12301, 0.69122, 0.69199, 0.4811, 0.47937, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1349, "ERR1821984", "ERX1884476", "ERS1343310", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 23", "SAMEA4431861", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:11Z|INSDC status:public|Submitter Id:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GATAGAGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#88.cram", "cram", 341873100.0, 2279154.0, "SC RUN 21115 7#88", "0:75 1:75", "A:90890336;C:79583107;G:79122986;T:92253133;N:23538", 75, 75, null, null, 90890336, 79583107, 79122986, 92253133, 23538, "ERX1884474", "ERS1343308", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95206, 0.95482, 0.13868, 0.13387, 0.67574, 0.67608, 0.4731, 0.47619, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1353, "ERR1821980", "ERX1884472", "ERS1343306", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 2", "SAMEA4431857", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence GTTGTCGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#86.cram", "cram", 298295250.0, 1988635.0, "SC RUN 21115 7#86", "0:75 1:75", "A:78320474;C:70341391;G:69945735;T:79667042;N:20608", 75, 75, null, null, 78320474, 70341391, 69945735, 79667042, 20608, "ERX1884472", "ERS1343306", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95656, 0.96027, 0.12066, 0.11593, 0.68454, 0.68669, 0.47075, 0.47796, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1354, "ERR1821979", "ERX1884471", "ERS1343305", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 16", "SAMEA4431856", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GCAACATT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#73.cram", "cram", 320242950.0, 2134953.0, "SC RUN 21115 7#73", "0:75 1:75", "A:84132446;C:75309652;G:75169050;T:85609846;N:21956", 75, 75, null, null, 84132446, 75309652, 75169050, 85609846, 21956, "ERX1884459", "ERS1343293", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95625, 0.96001, 0.13066, 0.12619, 0.68008, 0.68008, 0.47241, 0.48273, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1368, "ERR1821965", "ERX1884457", "ERS1343291", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 24", "SAMEA4431842", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TGCTGATA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#61.cram", "cram", 348135150.0, 2320901.0, "SC RUN 21115 7#61", "0:75 1:75", "A:91572265;C:81811057;G:81549256;T:93177722;N:24850", 75, 75, null, null, 91572265, 81811057, 81549256, 93177722, 24850, "ERX1884447", "ERS1343281", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95568, 0.95891, 0.12837, 0.12239, 0.67754, 0.67716, 0.47787, 0.47701, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1381, "ERR1821952", "ERX1884444", "ERS1343278", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 3", "SAMEA4431829", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TGACAGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#58.cram", "cram", 328086150.0, 2187241.0, "SC RUN 21115 7#58", "0:75 1:75", "A:85080319;C:78326244;G:78231894;T:86424790;N:22903", 75, 75, null, null, 85080319, 78326244, 78231894, 86424790, 22903, "ERX1884444", "ERS1343278", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95723, 0.96059, 0.1249, 0.12125, 0.67438, 0.67363, 0.47214, 0.47571, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1382, "ERR1821951", "ERX1884443", "ERS1343277", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 4", "SAMEA4431828", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TCTACGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#57.cram", "cram", 342888600.0, 2285924.0, "SC RUN 21115 7#57", "0:75 1:75", "A:89589944;C:81204257;G:80998953;T:91071349;N:24097", 75, 75, null, null, 89589944, 81204257, 80998953, 91071349, 24097, "ERX1884443", "ERS1343277", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95568, 0.95951, 0.11882, 0.11586, 0.68071, 0.68083, 0.47558, 0.47205, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1385, "ERR1821948", "ERX1884440", "ERS1343274", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 5", "SAMEA4431825", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#54", "DN465656V:F7", "Illumina sequencing of library DN465656V:F7  constructed from sample accession ERS1343274 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGTTCTCC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#54.cram", "cram", 311123100.0, 2074154.0, "SC RUN 21115 7#54", "0:75 1:75", "A:80977085;C:73956503;G:73826166;T:82342166;N:21180", 75, 75, null, null, 80977085, 73956503, 73826166, 82342166, 21180, "ERX1884440", "ERS1343274", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95727, 0.96199, 0.126, 0.12217, 0.68071, 0.68073, 0.48334, 0.48234, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1388, "ERR1821945", "ERX1884437", "ERS1343271", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 22", "SAMEA4431822", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#51", "DN465656V:C7", "Illumina sequencing of library DN465656V:C7  constructed from sample accession ERS1343271 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  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The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#46", "DN465656V:F6", "Illumina sequencing of library DN465656V:F6  constructed from sample accession ERS1343266 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCAGATTC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#46.cram", "cram", 330055050.0, 2200367.0, "SC RUN 21115 7#46", "0:75 1:75", "A:85481444;C:78898716;G:78797938;T:86854377;N:22575", 75, 75, null, null, 85481444, 78898716, 78797938, 86854377, 22575, "ERX1884432", "ERS1343266", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95991, 0.96358, 0.11884, 0.11578, 0.68284, 0.68434, 0.47867, 0.48444, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1394, "ERR1821939", "ERX1884431", "ERS1343265", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 17", "SAMEA4431816", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TATGCCAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#45.cram", "cram", 345969900.0, 2306466.0, "SC RUN 21115 7#45", "0:75 1:75", "A:90927344;C:81421201;G:81202158;T:92396072;N:23125", 75, 75, null, null, 90927344, 81421201, 81202158, 92396072, 23125, "ERX1884431", "ERS1343265", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95523, 0.9594, 0.12879, 0.12441, 0.68371, 0.68245, 0.48658, 0.47772, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1398, "ERR1821935", "ERX1884427", "ERS1343261", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 17", "SAMEA4431812", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TCCAGTCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#41.cram", "cram", 328126350.0, 2187509.0, "SC RUN 21115 7#41", "0:75 1:75", "A:84642756;C:78721382;G:78649568;T:86088943;N:23701", 75, 75, null, null, 84642756, 78721382, 78649568, 86088943, 23701, "ERX1884427", "ERS1343261", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95948, 0.9638, 0.13772, 0.13476, 0.67886, 0.67923, 0.4859, 0.47157, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1403, "ERR1821930", "ERX1884422", "ERS1343256", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 14", "SAMEA4431807", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#36", "DN465656V:D5", "Illumina sequencing of library DN465656V:D5  constructed from sample accession ERS1343256 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGAACTGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#36.cram", "cram", 339549600.0, 2263664.0, "SC RUN 21115 7#36", "0:75 1:75", "A:86935886;C:82184115;G:82019061;T:88386477;N:24061", 75, 75, null, null, 86935886, 82184115, 82019061, 88386477, 24061, "ERX1884422", "ERS1343256", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9625, 0.96656, 0.10814, 0.10457, 0.69077, 0.69104, 0.48142, 0.47703, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1405, "ERR1821928", "ERX1884420", "ERS1343254", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 6", "SAMEA4431805", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#34", "DN465656V:B5", "Illumina sequencing of library DN465656V:B5  constructed from sample accession ERS1343254 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAACGCTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#34.cram", "cram", 340225350.0, 2268169.0, "SC RUN 21115 7#34", "0:75 1:75", "A:89140873;C:80359815;G:80091727;T:90609762;N:23173", 75, 75, null, null, 89140873, 80359815, 80091727, 90609762, 23173, "ERX1884420", "ERS1343254", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95688, 0.96041, 0.11971, 0.11541, 0.68674, 0.68718, 0.47042, 0.47524, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1408, "ERR1821925", "ERX1884417", "ERS1343251", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 19", "SAMEA4431802", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#31", "DN465656V:G4", "Illumina sequencing of library DN465656V:G4  constructed from sample accession ERS1343251 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGTCTTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#31.cram", "cram", 338695950.0, 2257973.0, "SC RUN 21115 7#31", "0:75 1:75", "A:88637707;C:80089055;G:79880255;T:90066042;N:22891", 75, 75, null, null, 88637707, 80089055, 79880255, 90066042, 22891, "ERX1884417", "ERS1343251", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95645, 0.96094, 0.13554, 0.1313, 0.67907, 0.68008, 0.4806, 0.48064, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1410, "ERR1821923", "ERX1884415", "ERS1343249", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 1", "SAMEA4431800", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#29", "DN465656V:E4", "Illumina sequencing of library DN465656V:E4  constructed from sample accession ERS1343249 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCCTCAAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#29.cram", "cram", 366322350.0, 2442149.0, "SC RUN 21115 7#29", "0:75 1:75", "A:94017056;C:88415257;G:88329033;T:95536586;N:24418", 75, 75, null, null, 94017056, 88415257, 88329033, 95536586, 24418, "ERX1884415", "ERS1343249", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95967, 0.96398, 0.12878, 0.12562, 0.6826, 0.68227, 0.47576, 0.4828, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1411, "ERR1821922", "ERX1884414", "ERS1343248", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 9", "SAMEA4431799", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#28", "DN465656V:D4", "Illumina sequencing of library DN465656V:D4  constructed from sample accession ERS1343248 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TACAGGAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#28.cram", "cram", 364518600.0, 2430124.0, "SC RUN 21115 7#28", "0:75 1:75", "A:95092411;C:86578092;G:86167378;T:96656365;N:24354", 75, 75, null, null, 95092411, 86578092, 86167378, 96656365, 24354, "ERX1884414", "ERS1343248", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95832, 0.96248, 0.12173, 0.1165, 0.68927, 0.69014, 0.48572, 0.48471, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1412, "ERR1821921", "ERX1884413", "ERS1343247", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 13", "SAMEA4431798", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#27", "DN465656V:C4", "Illumina sequencing of library DN465656V:C4  constructed from sample accession ERS1343247 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGTGACT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#27.cram", "cram", 354481650.0, 2363211.0, "SC RUN 21115 7#27", "0:75 1:75", "A:91732533;C:84785566;G:84645818;T:93293392;N:24341", 75, 75, null, null, 91732533, 84785566, 84645818, 93293392, 24341, "ERX1884413", "ERS1343247", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96029, 0.96432, 0.1188, 0.11522, 0.68047, 0.6818, 0.4676, 0.46541, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1413, "ERR1821920", "ERX1884412", "ERS1343246", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 15", "SAMEA4431797", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TTCCTGCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#26.cram", "cram", 331984500.0, 2213230.0, "SC RUN 21115 7#26", "0:75 1:75", "A:86348725;C:78998309;G:78858826;T:87756035;N:22605", 75, 75, null, null, 86348725, 78998309, 78858826, 87756035, 22605, "ERX1884412", "ERS1343246", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95887, 0.96214, 0.11962, 0.11489, 0.6815, 0.68148, 0.47571, 0.47326, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1414, "ERR1821919", "ERX1884411", "ERS1343245", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 20", "SAMEA4431796", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TGCGATCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#25.cram", "cram", 320720700.0, 2138138.0, "SC RUN 21115 7#25", "0:75 1:75", "A:84088856;C:75649711;G:75458666;T:85500924;N:22543", 75, 75, null, null, 84088856, 75649711, 75458666, 85500924, 22543, "ERX1884411", "ERS1343245", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95593, 0.95888, 0.12916, 0.12423, 0.68448, 0.68294, 0.48286, 0.48538, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1415, "ERR1821918", "ERX1884410", "ERS1343244", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 22", "SAMEA4431795", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#24", "DN465656V:H3", "Illumina sequencing of library DN465656V:H3  constructed from sample accession ERS1343244 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTGACTCT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#24.cram", "cram", 401229000.0, 2674860.0, "SC RUN 21115 7#24", "0:75 1:75", "A:104380185;C:95588978;G:95185797;T:106047162;N:26878", 75, 75, null, null, 104380185, 95588978, 95185797, 106047162, 26878, "ERX1884410", "ERS1343244", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95821, 0.96231, 0.11999, 0.11696, 0.68109, 0.68183, 0.48041, 0.47251, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1417, "ERR1821916", "ERX1884408", "ERS1343242", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 11", "SAMEA4431793", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431793|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:14Z|INSDC status:public|Submitter Id:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#22", "DN465656V:F3", "Illumina sequencing of library DN465656V:F3  constructed from sample accession ERS1343242 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGATACGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#22.cram", "cram", 354227550.0, 2361517.0, "SC RUN 21115 7#22", "0:75 1:75", "A:93246529;C:83230502;G:82935819;T:94790120;N:24580", 75, 75, null, null, 93246529, 83230502, 82935819, 94790120, 24580, "ERX1884408", "ERS1343242", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95696, 0.96069, 0.12744, 0.12223, 0.67754, 0.67738, 0.47384, 0.47366, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1418, "ERR1821915", "ERX1884407", "ERS1343241", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 9", "SAMEA4431792", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431792|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:13Z|INSDC status:public|Submitter Id:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TCGAGCGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#21.cram", "cram", 332916150.0, 2219441.0, "SC RUN 21115 7#21", "0:75 1:75", "A:86106400;C:79663230;G:79547867;T:87574639;N:24014", 75, 75, null, null, 86106400, 79663230, 79547867, 87574639, 24014, "ERX1884407", "ERS1343241", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95985, 0.96377, 0.12288, 0.11903, 0.68532, 0.68523, 0.47121, 0.47269, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1419, "ERR1821914", "ERX1884406", "ERS1343240", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 1", "SAMEA4431791", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431791|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:12Z|INSDC status:public|Submitter Id:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#20", "DN465656V:D3", "Illumina sequencing of library DN465656V:D3  constructed from sample accession ERS1343240 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTGGAGGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#20.cram", "cram", 337598700.0, 2250658.0, "SC RUN 21115 7#20", "0:75 1:75", "A:86997927;C:81096038;G:81038067;T:88443426;N:23242", 75, 75, null, null, 86997927, 81096038, 81038067, 88443426, 23242, "ERX1884406", "ERS1343240", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96164, 0.96613, 0.1238, 0.12027, 0.68769, 0.68797, 0.47914, 0.47027, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1422, "ERR1821911", "ERX1884403", "ERS1343237", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 13", "SAMEA4431788", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431788|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:10Z|INSDC status:public|Submitter Id:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#17", "DN465656V:A3", "Illumina sequencing of library DN465656V:A3  constructed from sample accession ERS1343237 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGTACCTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#17.cram", "cram", 265689750.0, 1771265.0, "SC RUN 21115 7#17", "0:75 1:75", "A:69761602;C:62539487;G:62444788;T:70924883;N:18990", 75, 75, null, null, 69761602, 62539487, 62444788, 70924883, 18990, "ERX1884403", "ERS1343237", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95599, 0.95983, 0.12869, 0.12327, 0.67925, 0.68045, 0.46923, 0.46159, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1425, "ERR1821908", "ERX1884400", "ERS1343234", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 8", "SAMEA4431785", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431785|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:07Z|INSDC status:public|Submitter Id:878ab030 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GGCTACAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#11.cram", "cram", 320521950.0, 2136813.0, "SC RUN 21115 7#11", "0:75 1:75", "A:84018705;C:75695161;G:75424320;T:85360772;N:22992", 75, 75, null, null, 84018705, 75695161, 75424320, 85360772, 22992, "ERX1884397", "ERS1343231", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95781, 0.96265, 0.11883, 0.11449, 0.68613, 0.68724, 0.48729, 0.48412, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1429, "ERR1821904", "ERX1884396", "ERS1343230", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 19", "SAMEA4431781", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431781|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:04Z|INSDC status:public|Submitter Id:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TAGCTTGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#10.cram", "cram", 341330550.0, 2275537.0, "SC RUN 21115 7#10", "0:75 1:75", "A:88881827;C:81100577;G:80952610;T:90372489;N:23047", 75, 75, null, null, 88881827, 81100577, 80952610, 90372489, 23047, "ERX1884396", "ERS1343230", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95807, 0.9608, 0.13472, 0.13072, 0.67943, 0.68164, 0.47486, 0.47528, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1434, "ERR1821899", "ERX1884391", "ERS1343225", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 23", "SAMEA4431776", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:41:59Z|INSDC status:public|Submitter Id:87436e00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence ACAGTGGT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#5.cram", "cram", 310863300.0, 2072422.0, "SC RUN 21115 7#5", "0:75 1:75", "A:82882606;C:72122589;G:71664609;T:84171411;N:22085", 75, 75, null, null, 82882606, 72122589, 71664609, 84171411, 22085, "ERX1884391", "ERS1343225", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95338, 0.95787, 0.13123, 0.12617, 0.68124, 0.68245, 0.47344, 0.47269, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1436, "ERR1821897", "ERX1884389", "ERS1343223", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 15", "SAMEA4431774", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431774|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:57Z|INSDC status:public|Submitter Id:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#3", "DN465656V:C1", "Illumina sequencing of library DN465656V:C1  constructed from sample accession ERS1343223 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTAGGCAT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#3.cram", "cram", 317589600.0, 2117264.0, "SC RUN 21115 7#3", "0:75 1:75", "A:83402478;C:74821194;G:74551562;T:84791784;N:22582", 75, 75, null, null, 83402478, 74821194, 74551562, 84791784, 22582, "ERX1884389", "ERS1343223", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95433, 0.95912, 0.13446, 0.13088, 0.67732, 0.67829, 0.47951, 0.4764, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1437, "ERR1821896", "ERX1884388", "ERS1343222", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 18", "SAMEA4431773", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431773|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:56Z|INSDC status:public|Submitter Id:870f65b0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence CGATGTTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#2.cram", "cram", 293577000.0, 1957180.0, "SC RUN 21115 7#2", "0:75 1:75", "A:77750011;C:68531930;G:68273993;T:79000857;N:20209", 75, 75, null, null, 77750011, 68531930, 68273993, 79000857, 20209, "ERX1884388", "ERS1343222", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95171, 0.95589, 0.13816, 0.13514, 0.67629, 0.67547, 0.47871, 0.46646, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1438, "ERR1821895", "ERX1884387", "ERS1343221", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 5", "SAMEA4431772", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431772|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:55Z|INSDC status:public|Submitter Id:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 7#1", "DN465656V:A1", "Illumina sequencing of library DN465656V:A1  constructed from sample accession ERS1343221 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence ATCACGTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_7#1.cram", "cram", 312615300.0, 2084102.0, "SC RUN 21115 7#1", "0:75 1:75", "A:82010578;C:73778620;G:73476362;T:83328293;N:21447", 75, 75, null, null, 82010578, 73778620, 73476362, 83328293, 21447, "ERX1884387", "ERS1343221", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95424, 0.95872, 0.13615, 0.13291, 0.67848, 0.67821, 0.48083, 0.47719, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1439, "ERR1821894", "ERX1884386", "ERS1343316", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 7", "SAMEA4431867", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#96", "DN465656V:H12", "Illumina sequencing of library DN465656V:H12  constructed from sample accession ERS1343316 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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This submission includes reads tagged with the sequence GCAATCCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#90.cram", "cram", 327176100.0, 2181174.0, "SC RUN 21115 6#90", "0:75 1:75", "A:85797808;C:77208746;G:76973605;T:87174350;N:21591", 75, 75, null, null, 85797808, 77208746, 76973605, 87174350, 21591, "ERX1884380", "ERS1343310", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95524, 0.95895, 0.12923, 0.12528, 0.6785, 0.67669, 0.4702, 0.47308, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1447, "ERR1821886", "ERX1884378", "ERS1343308", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 24", "SAMEA4431859", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:10Z|INSDC status:public|Submitter Id:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GATAGAGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#88.cram", "cram", 342069750.0, 2280465.0, "SC RUN 21115 6#88", "0:75 1:75", "A:90927679;C:79641770;G:79198404;T:92279313;N:22584", 75, 75, null, null, 90927679, 79641770, 79198404, 92279313, 22584, "ERX1884378", "ERS1343308", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95225, 0.95552, 0.13847, 0.13441, 0.67586, 0.67647, 0.47759, 0.47668, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1449, "ERR1821884", "ERX1884376", "ERS1343306", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 2", "SAMEA4431857", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence GTTGTCGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#86.cram", "cram", 297494250.0, 1983295.0, "SC RUN 21115 6#86", "0:75 1:75", "A:78113837;C:70164429;G:69789398;T:79405552;N:21034", 75, 75, null, null, 78113837, 70164429, 69789398, 79405552, 21034, "ERX1884376", "ERS1343306", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95656, 0.96096, 0.12219, 0.11713, 0.68639, 0.68594, 0.47263, 0.44681, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1450, "ERR1821883", "ERX1884375", "ERS1343305", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 16", "SAMEA4431856", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence GCAACATT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#73.cram", "cram", 319905450.0, 2132703.0, "SC RUN 21115 6#73", "0:75 1:75", "A:84048036;C:75245962;G:75099754;T:85489648;N:22050", 75, 75, null, null, 84048036, 75245962, 75099754, 85489648, 22050, "ERX1884363", "ERS1343293", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95622, 0.95951, 0.1318, 0.12701, 0.67795, 0.67963, 0.4715, 0.47342, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1464, "ERR1821869", "ERX1884361", "ERS1343291", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 24", "SAMEA4431842", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#71", "DN465656V:G9", "Illumina sequencing of library DN465656V:G9  constructed from sample accession ERS1343291 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GTGTCCTT.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#71.cram", "cram", 364560150.0, 2430401.0, "SC RUN 21115 6#71", "0:75 1:75", "A:96055007;C:85612712;G:85259174;T:97609215;N:24042", 75, 75, null, null, 96055007, 85612712, 85259174, 97609215, 24042, "ERX1884361", "ERS1343291", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95536, 0.95788, 0.12936, 0.12341, 0.67886, 0.67974, 0.4774, 0.47257, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1467, "ERR1821866", "ERX1884358", "ERS1343288", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 4", "SAMEA4431839", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:53Z|INSDC status:public|Submitter Id:894a1370 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. 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This submission includes reads tagged with the sequence TGCGTGAA.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#68.cram", "cram", 330650550.0, 2204337.0, "SC RUN 21115 6#68", "0:75 1:75", "A:85657332;C:79003383;G:78841297;T:87126221;N:22317", 75, 75, null, null, 85657332, 79003383, 78841297, 87126221, 22317, "ERX1884358", "ERS1343288", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.96025, 0.96277, 0.13225, 0.12688, 0.68028, 0.68, 0.46939, 0.47625, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1468, "ERR1821865", "ERX1884357", "ERS1343287", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 3", "SAMEA4431838", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TGACAGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#58.cram", "cram", 327769050.0, 2185127.0, "SC RUN 21115 6#58", "0:75 1:75", "A:85001515;C:78219047;G:78171081;T:86354498;N:22909", 75, 75, null, null, 85001515, 78219047, 78171081, 86354498, 22909, "ERX1884348", "ERS1343278", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95768, 0.95988, 0.1234, 0.12033, 0.67347, 0.67436, 0.47371, 0.4761, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1478, "ERR1821855", "ERX1884347", "ERS1343277", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 4", "SAMEA4431828", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. 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This submission includes reads tagged with the sequence TCTACGAC.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#57.cram", "cram", 342609600.0, 2284064.0, "SC RUN 21115 6#57", "0:75 1:75", "A:89501767;C:81150340;G:80928348;T:91005533;N:23612", 75, 75, null, null, 89501767, 81150340, 80928348, 91005533, 23612, "ERX1884347", "ERS1343277", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95666, 0.95947, 0.11917, 0.11555, 0.68097, 0.68097, 0.4724, 0.47141, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1481, "ERR1821852", "ERX1884344", "ERS1343274", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 5", "SAMEA4431825", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#54", "DN465656V:F7", "Illumina sequencing of library DN465656V:F7  constructed from sample accession ERS1343274 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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The RNA also contains ERCC spike mix 1 Ambion.|sample name:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#51", "DN465656V:C7", "Illumina sequencing of library DN465656V:C7  constructed from sample accession ERS1343271 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  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The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#45", "DN465656V:E6", "Illumina sequencing of library DN465656V:E6  constructed from sample accession ERS1343265 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TATGCCAG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#45.cram", "cram", 345276150.0, 2301841.0, "SC RUN 21115 6#45", "0:75 1:75", "A:90759334;C:81268319;G:81034519;T:92190083;N:23895", 75, 75, null, null, 90759334, 81268319, 81034519, 92190083, 23895, "ERX1884335", "ERS1343265", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95671, 0.96105, 0.12926, 0.12471, 0.68268, 0.68254, 0.48751, 0.47819, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1494, "ERR1821839", "ERX1884331", "ERS1343261", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 17", "SAMEA4431812", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#41", "DN465656V:A6", "Illumina sequencing of library DN465656V:A6  constructed from sample accession ERS1343261 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCCAGTCG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#41.cram", "cram", 328054650.0, 2187031.0, "SC RUN 21115 6#41", "0:75 1:75", "A:84612234;C:78682169;G:78656004;T:86082189;N:22054", 75, 75, null, null, 84612234, 78682169, 78656004, 86082189, 22054, "ERX1884331", "ERS1343261", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95963, 0.96285, 0.13796, 0.13432, 0.67925, 0.67921, 0.48858, 0.48254, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1499, "ERR1821834", "ERX1884326", "ERS1343256", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 14", "SAMEA4431807", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#36", "DN465656V:D5", "Illumina sequencing of library DN465656V:D5  constructed from sample accession ERS1343256 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGAACTGG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#36.cram", "cram", 339214050.0, 2261427.0, "SC RUN 21115 6#36", "0:75 1:75", "A:86846726;C:82088232;G:81945755;T:88309770;N:23567", 75, 75, null, null, 86846726, 82088232, 81945755, 88309770, 23567, "ERX1884326", "ERS1343256", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.9627, 0.96656, 0.10715, 0.10394, 0.69217, 0.69276, 0.48147, 0.48049, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1501, "ERR1821832", "ERX1884324", "ERS1343254", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 mock 6hpi 6", "SAMEA4431805", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#34", "DN465656V:B5", "Illumina sequencing of library DN465656V:B5  constructed from sample accession ERS1343254 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAACGCTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#34.cram", "cram", 340228200.0, 2268188.0, "SC RUN 21115 6#34", "0:75 1:75", "A:89124549;C:80356918;G:80126873;T:90596564;N:23296", 75, 75, null, null, 89124549, 80356918, 80126873, 90596564, 23296, "ERX1884324", "ERS1343254", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95673, 0.96062, 0.12004, 0.11591, 0.68643, 0.68598, 0.46835, 0.47742, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"], [1504, "ERR1821829", "ERX1884321", "ERS1343251", "ERP012128", "PRJEB10833", "RNASeq of zebrafish embryos infected with pathogens", "RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907", "Transcriptome Analysis", "Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq", "ArrayExpress:E ERAD 428", null, null, "zmp ph263 inf 6hpi 19", "SAMEA4431802", "Wellcome Sanger Institute", "ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF", null, null, null, null, null, null, null, null, "Illumina HiSeq 2500 paired end sequencing", "SC EXP 21115 6#31", "DN465656V:G4", "Illumina sequencing of library DN465656V:G4  constructed from sample accession ERS1343251 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGTCTTG.", "RNA seq dUTP eukaryotic", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "ERP012128", "Illumina HiSeq 2500 paired end sequencing", "ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16", "21115_6#31.cram", "cram", 338676000.0, 2257840.0, "SC RUN 21115 6#31", "0:75 1:75", "A:88628796;C:80095770;G:79870942;T:90056055;N:24437", 75, 75, null, null, 88628796, 80095770, 79870942, 90056055, 24437, "ERX1884321", "ERS1343251", "ERA808852", "European Nucleotide Archive", "Wellcome Sanger Institute", 2, 0.95695, 0.96014, 0.13495, 0.13039, 0.67866, 0.67878, 0.47871, 0.47791, 75, 75, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United Kingdom", "2016-09-12", "Hatching", "Embryo", "Fin", "Surface Structure"]], "truncated": false, "filtered_table_rows_count": 5726, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", 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[experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"devstage_curation\" = :p0 and \"experiment.platform\" = :p1 order by rowid limit 101", "params": {"p0": "Hatching", "p1": "ILLUMINA"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Hatching&experiment.platform=ILLUMINA", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 5555, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Hatching&experiment.platform=ILLUMINA&experiment.library_strategy=RNA-Seq", "selected": false}, {"value": "OTHER", "label": "OTHER", "count": 96, "toggle_url": 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