{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where devstage_curation = \"Cleavage\" and experiment.library_selection = \"Oligo-dT\"", "rows": [[9919, "ERR5167510", "ERX4972431", "ERS5593364", "ERP122761", "PRJEB39265", "RNA dynamics during zebrafish development", "ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183", "Other", "RNA dynamics during early zebrafish development", "ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05", null, null, "cDNA WT 2hpf rep1", "JD T20 PDPN191089", null, "ENA FIRST PUBLIC:2022 07 05T12:06:34Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:34Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05", null, null, null, null, null, null, null, null, "PromethION sequencing", "ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 21 01 2021 22:16:50:154 1", "unspecified", "1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "OXFORD_NANOPORE", "PromethION", null, "ERP122761", "PromethION sequencing", "ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05", null, null, null, null, "ena RUN CENTER FOR GENOMIC REGULATION CRG 21 01 2021 22:16:50:154 1", null, null, null, null, null, null, null, null, null, null, null, "ERX4972431", null, "ERA3319053", "CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive", "CENTER FOR GENOMIC REGULATION (CRG)", null, null, null, null, null, null, null, null, null, null, null, null, null, null, "ont", "ont", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Spain", "2022-07-05", "Cleavage", "Embryo", "Undetermined", "Embryo Imprecise"], [28560, "SRR26395034", "SRX22100899", "SRS19166025", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. 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Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell RNA seq rep6", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:SR 64 6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Illumina RNA seq of zebrafish: 64 cell replicate6", "DR 033", "DR 033", "mRNA from five stages fertilized egg  1 cell  64 cell  1k cell  and shield was extracted with Dynabeads@ mRNA Purification Kit Ambion and subjected to TURBOTM DNase lnvitrogen treatment. RNA Seq libraries were prepared using the NEBNext UltraTM RNA Library Prep Kit for Illumina NEB  USA and then sequenced at 275 bp paired end mode on an Illumina HiSeq X Ten system with 8 replicates for each stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP466518", null, null, "C64-6_1.fq.gz C64-6_2.fq.gz", "fastq fastq", 14251193190.0, 52782197.0, "C64 6 1.fq.gz", "0:135 1:135", "A:3801408063;C:3332053069;G:3345233238;T:3769986735;N:2512085", 135, 135, null, null, 3801408063, 3332053069, 3345233238, 3769986735, 2512085, "SRX22100897", "SRS19166023", "SRA1731898", "University of Michigan|Computational Medicine and Bioinformatics", "University of Michigan", 2, 0.94348, 0.94342, 0.02571, 0.02414, 0.77112, 0.77492, 0.48218, 0.4777, 135, 135, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "United States", "2023-10-16", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [28563, "SRR26395037", "SRX22100896", "SRS19166022", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell RNA seq rep5", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:SR 64 5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Illumina RNA seq of zebrafish: 64 cell replicate5", "DR 032", "DR 032", "mRNA from five stages fertilized egg  1 cell  64 cell  1k cell  and shield was extracted with Dynabeads@ mRNA Purification Kit Ambion and subjected to TURBOTM DNase lnvitrogen treatment. RNA Seq libraries were prepared using the NEBNext UltraTM RNA Library Prep Kit for Illumina NEB  USA and then sequenced at 275 bp paired end mode on an Illumina HiSeq X Ten system with 8 replicates for each stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP466518", null, null, "C64-5_1.fq.gz C64-5_2.fq.gz", "fastq fastq", 15142948650.0, 56084995.0, "C64 5 1.fq.gz", "0:135 1:135", "A:4031434744;C:3549307228;G:3562636129;T:3996868396;N:2702153", 135, 135, null, null, 4031434744, 3549307228, 3562636129, 3996868396, 2702153, "SRX22100896", "SRS19166022", "SRA1731898", "University of Michigan|Computational Medicine and Bioinformatics", "University of Michigan", 2, 0.93753, 0.93663, 0.02519, 0.024, 0.77301, 0.77674, 0.47421, 0.46951, 135, 135, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "United States", "2023-10-16", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [28564, "SRR26395038", "SRX22100895", "SRS19166021", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell RNA seq rep4", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:SR 64 4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Illumina RNA seq of zebrafish: 64 cell replicate4", "DR 031", "DR 031", "mRNA from five stages fertilized egg  1 cell  64 cell  1k cell  and shield was extracted with Dynabeads@ mRNA Purification Kit Ambion and subjected to TURBOTM DNase lnvitrogen treatment. RNA Seq libraries were prepared using the NEBNext UltraTM RNA Library Prep Kit for Illumina NEB  USA and then sequenced at 275 bp paired end mode on an Illumina HiSeq X Ten system with 8 replicates for each stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP466518", null, null, "C64-4_1.fq.gz C64-4_2.fq.gz", "fastq fastq", 14488466220.0, 53660986.0, "C64 4 1.fq.gz", "0:135 1:135", "A:3863267905;C:3389148218;G:3402037749;T:3831469669;N:2542679", 135, 135, null, null, 3863267905, 3389148218, 3402037749, 3831469669, 2542679, "SRX22100895", "SRS19166021", "SRA1731898", "University of Michigan|Computational Medicine and Bioinformatics", "University of Michigan", 2, 0.93879, 0.93825, 0.02613, 0.02437, 0.77212, 0.77577, 0.47796, 0.47196, 135, 135, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "United States", "2023-10-16", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [28566, "SRR26395040", "SRX22100893", "SRS19166019", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell RNA seq rep3", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:SR 64 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Illumina RNA seq of zebrafish: 64 cell replicate3", "DR 030", "DR 030", "mRNA from five stages fertilized egg  1 cell  64 cell  1k cell  and shield was extracted with Dynabeads@ mRNA Purification Kit Ambion and subjected to TURBOTM DNase lnvitrogen treatment. RNA Seq libraries were prepared using the NEBNext UltraTM RNA Library Prep Kit for Illumina NEB  USA and then sequenced at 275 bp paired end mode on an Illumina HiSeq X Ten system with 8 replicates for each stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP466518", null, null, "C64-3_1.fq.gz C64-3_2.fq.gz", "fastq fastq", 16017940620.0, 59325706.0, "C64 3 1.fq.gz", "0:135 1:135", "A:4273558549;C:3744205640;G:3760255830;T:4237074764;N:2845837", 135, 135, null, null, 4273558549, 3744205640, 3760255830, 4237074764, 2845837, "SRX22100893", "SRS19166019", "SRA1731898", "University of Michigan|Computational Medicine and Bioinformatics", "University of Michigan", 2, 0.93688, 0.9383, 0.02702, 0.02595, 0.77433, 0.7767, 0.47319, 0.47413, 135, 135, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "United States", "2023-10-16", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [28567, "SRR26395041", "SRX22100892", "SRS19166018", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell RNA seq rep2", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:SR 64 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Illumina RNA seq of zebrafish: 64 cell replicate2", "DR 029", "DR 029", "mRNA from five stages fertilized egg  1 cell  64 cell  1k cell  and shield was extracted with Dynabeads@ mRNA Purification Kit Ambion and subjected to TURBOTM DNase lnvitrogen treatment. RNA Seq libraries were prepared using the NEBNext UltraTM RNA Library Prep Kit for Illumina NEB  USA and then sequenced at 275 bp paired end mode on an Illumina HiSeq X Ten system with 8 replicates for each stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP466518", null, null, "C64-2_1.fq.gz C64-2_2.fq.gz", "fastq fastq", 16732836630.0, 61973469.0, "C64 2 1.fq.gz", "0:135 1:135", "A:4451249064;C:3924735460;G:3940154978;T:4413679398;N:3017730", 135, 135, null, null, 4451249064, 3924735460, 3940154978, 4413679398, 3017730, "SRX22100892", "SRS19166018", "SRA1731898", "University of Michigan|Computational Medicine and Bioinformatics", "University of Michigan", 2, 0.94302, 0.94257, 0.02459, 0.02333, 0.77248, 0.77479, 0.47902, 0.47678, 135, 135, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "United States", "2023-10-16", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [28568, "SRR26395042", "SRX22100891", "SRS19166017", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell RNA seq rep1", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:SR 64 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Illumina RNA seq of zebrafish: 64 cell replicate1", "DR 028", "DR 028", "mRNA from five stages fertilized egg  1 cell  64 cell  1k cell  and shield was extracted with Dynabeads@ mRNA Purification Kit Ambion and subjected to TURBOTM DNase lnvitrogen treatment. RNA Seq libraries were prepared using the NEBNext UltraTM RNA Library Prep Kit for Illumina NEB  USA and then sequenced at 275 bp paired end mode on an Illumina HiSeq X Ten system with 8 replicates for each stage.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "HiSeq X Ten", null, "SRP466518", null, null, "C64-1_1.fq.gz C64-1_2.fq.gz", "fastq fastq", 16459047450.0, 60959435.0, "C64 1 1.fq.gz", "0:135 1:135", "A:4391773658;C:3847087464;G:3866793612;T:4350489494;N:2903222", 135, 135, null, null, 4391773658, 3847087464, 3866793612, 4350489494, 2903222, "SRX22100891", "SRS19166017", "SRA1731898", "University of Michigan|Computational Medicine and Bioinformatics", "University of Michigan", 2, 0.94676, 0.94707, 0.02568, 0.0244, 0.77236, 0.77593, 0.48374, 0.47691, 135, 135, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "nebnext", "bulk", "unknown", "unknown", null, "United States", "2023-10-16", "Cleavage", "Embryo", "Embryo Imprecise", "All anatomical structures"], [28576, "SRR26395050", "SRX22100883", "SRS19166009", "SRP466518", "PRJNA1028258", "Zygotic activation of transposable elements during zebrafish early embryogenesis", "PRJNA1028258", "Other", "Here we leverage high quality long reads plus manual annotation to establish a high resolution landscape of TE activation and transcription at the levels of locus  transcript  and allele over zebrafish early embryonic development. Moreover  we reveal a previously unknown temporal trajectory and subcellular distribution of zygotic TE activation ZTA in zebrafish  where extensive variation exists among TE families  subfamilies  loci  transcripts and alleles with respect to evolutionary age.", null, "pubmed:40246845", null, null, "64 cell Iso seq", null, "strain:AB x India|age:2 hpf|dev stage:64 cell|collection date:2018 12|geo loc name:China:Beijing|sex:N/A|tissue:embryo|source material identifier:LR 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "PacBio Iso seq of zebrafish: 64 cell", "DR 003", "DR 003", "Total RNA was isolated from each developmental stages of zebrafish embryos using TRIzolTM Reagent Invitrogen. RNA purity and concentration were assessed with the NanoPhotometer spectrophotometer IMPLEN  CA  USA and the Qubit RNA Assay Kit in the Qubit 3.0 Fluorometer Life Technologies  CA  USA. The RNA integrity number RIN was determined using the RNA Nano 6000 Assay Kit and Agilent Bioanalyzer 2100 system Agilent Technologies  CA  USA. RNA samples with a RIN  8 were used to synthesize cDNA with SMARTerPCR cDNA Synthesis Kit Takara Bio USA  Inc.  Mountain View  CA  USA. PCR amplification was performed using a KAPA HiFi PCR Kit Kapa Biosystems  Wilmington  MA  USA with the optimized number of cycles. Size selection of PCR products cDNA for each sample was applied using the BluePippin System: <3 kb and >3 kb. 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[GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"devstage_curation\" = :p0 and \"experiment.library_selection\" = :p1 order by rowid limit 101", "params": {"p0": "Cleavage", "p1": "Oligo-dT"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "TRANSCRIPTOMIC", "label": "TRANSCRIPTOMIC", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.library_source=TRANSCRIPTOMIC", "selected": false}], "truncated": false}, "experiment.library_selection": {"name": "experiment.library_selection", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "Oligo-dT", "label": "Oligo-dT", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage", "selected": true}], "truncated": false}, "experiment.library_layout": {"name": "experiment.library_layout", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "PAIRED", "label": "PAIRED", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.library_layout=PAIRED", "selected": false}, {"value": "SINGLE", "label": "SINGLE", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.library_layout=SINGLE", "selected": false}], "truncated": false}, "experiment.platform": {"name": "experiment.platform", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "ILLUMINA", "label": "ILLUMINA", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.platform=ILLUMINA", "selected": false}, {"value": "OXFORD_NANOPORE", "label": "OXFORD_NANOPORE", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.platform=OXFORD_NANOPORE", "selected": false}, {"value": "PACBIO_SMRT", "label": "PACBIO_SMRT", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&experiment.platform=PACBIO_SMRT", "selected": false}], "truncated": false}, "devstage_curation_coarse": {"name": "devstage_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "Embryo", "label": "Embryo", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&devstage_curation_coarse=Embryo", "selected": false}], "truncated": false}, "devstage_curation": {"name": "devstage_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "Cleavage", "label": "Cleavage", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.library_selection=Oligo-dT", "selected": true}], "truncated": false}, "tissue_curation_coarse": {"name": "tissue_curation_coarse", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "All anatomical structures", "label": "All anatomical structures", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&tissue_curation_coarse=All+anatomical+structures", "selected": false}, {"value": "Embryo Imprecise", "label": "Embryo Imprecise", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&tissue_curation_coarse=Embryo+Imprecise", "selected": false}], "truncated": false}, "tissue_curation": {"name": "tissue_curation", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "Whole Organism", "label": "Whole Organism", "count": 11, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&tissue_curation=Whole+Organism", "selected": false}, {"value": "Embryo Imprecise", "label": "Embryo Imprecise", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&tissue_curation=Embryo+Imprecise", "selected": false}, {"value": "Undetermined", "label": "Undetermined", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&tissue_curation=Undetermined", "selected": false}], "truncated": false}, "technology": {"name": "technology", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT", "results": [{"value": "unknown", "label": "unknown", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?devstage_curation=Cleavage&experiment.library_selection=Oligo-dT&technology=unknown", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 86.83991699945182}