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Further  the differentially expressed genes were devided into up regulated and down regulated genes for GO and KEGG analysis. Overall design: Ovary mRNA profiles of adult wildtype and sox3 /  zebrafish were generated by deep sequencing.", null, "pubmed:30588557", null, "KO mix", "GSM3190267", null, "source name:Ovary|strain:AB|tissue:Ovary|age:Adult", "KO mix", "Sequenced reads were trimmed for adaptor sequence  and masked for low complexity or low quality sequence  then mapped to GRCz10 whole genome using HISAT  mapped to genes using Bowtie2. fragments per kilo bases per million fragments FPKM were calculated using RSEM. Genome build: GRCz10 Supplementary files format and content: The text files include the Ensembl ID of genes and the FPKM values for each Sample.", "Ovary", null, "Ovaries were isolated  frozen on dry ice  and RNA was harvested using Trizol reagent. Agilent RNA 6000 nano Reagents Port 1 was used for RNA qualities analysis by Agilent 2100 Bioanalyzer. RNA libraries were prepared for sequencing using standard BGISEQ 500 protocols.", null, "strain:AB|tissue:Ovary|age:Adult", "GSM3190267", "GSM3190267: KO mix; Danio rerio; RNA Seq", "GSM3190267", null, "1", "Ovaries were isolated  frozen on dry ice  and RNA was harvested using Trizol reagent. Agilent RNA 6000 nano Reagents Port 1 was used for RNA qualities analysis by Agilent 2100 Bioanalyzer. 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Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 pos.rep3", "GSM4407932", null, "source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 pos.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured TgtpWT zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407932", "GSM4407932: Ventricles  uninj p53 pos.rep3; Danio rerio; RNA Seq", "GSM4407932", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407932", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAADRAAPEI-512_1.fq.gz", "fastq", 1835058950.0, 36701179.0, "GSM4407932 r1", "0:50", "A:502113193;C:411542245;G:409297699;T:512105813;N:0", 50, null, null, null, 502113193, 411542245, 409297699, 512105813, 0, "SRX7899687", "SRS6307737", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93734, null, 0.0825, null, 0.77094, null, 0.54336, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57260, "SRR11294127", "SRX7899686", "SRS6307736", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 pos.rep2", "GSM4407931", null, "source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 pos.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured TgtpWT zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407931", "GSM4407931: Ventricles  uninj p53 pos.rep2; Danio rerio; RNA Seq", "GSM4407931", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407931", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAACRAAPEI-511_1.fq.gz", "fastq", 1834865450.0, 36697309.0, "GSM4407931 r1", "0:50", "A:505143598;C:405191113;G:410587735;T:513943004;N:0", 50, null, null, null, 505143598, 405191113, 410587735, 513943004, 0, "SRX7899686", "SRS6307736", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93631, null, 0.08049, null, 0.76481, null, 0.50179, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57261, "SRR11294126", "SRX7899685", "SRS6307735", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 pos.rep1", "GSM4407930", null, "source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 pos.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured TgtpWT zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407930", "GSM4407930: Ventricles  uninj p53 pos.rep1; Danio rerio; RNA Seq", "GSM4407930", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407930", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAABRAAPEI-510_1.fq.gz", "fastq", 1834689950.0, 36693799.0, "GSM4407930 r1", "0:50", "A:504160420;C:403583740;G:412496526;T:514449264;N:0", 50, null, null, null, 504160420, 403583740, 412496526, 514449264, 0, "SRX7899685", "SRS6307735", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93629, null, 0.08291, null, 0.77356, null, 0.49244, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57262, "SRR11294125", "SRX7899684", "SRS6307734", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 neg.rep3", "GSM4407929", null, "source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 neg.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured Tgtp53M214K zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407929", "GSM4407929: Ventricles  uninj p53 neg.rep3; Danio rerio; RNA Seq", "GSM4407929", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407929", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAIRAAPEI-521_1.fq.gz", "fastq", 1834395600.0, 36687912.0, "GSM4407929 r1", "0:50", "A:499900882;C:409384440;G:414252017;T:510858261;N:0", 50, null, null, null, 499900882, 409384440, 414252017, 510858261, 0, "SRX7899684", "SRS6307734", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93583, null, 0.07847, null, 0.76974, null, 0.54357, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57263, "SRR11294124", "SRX7899683", "SRS6307733", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 neg.rep2", "GSM4407928", null, "source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 neg.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured Tgtp53M214K zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407928", "GSM4407928: Ventricles  uninj p53 neg.rep2; Danio rerio; RNA Seq", "GSM4407928", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407928", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAHRAAPEI-520_1.fq.gz", "fastq", 1834233850.0, 36684677.0, "GSM4407928 r1", "0:50", "A:504582681;C:405014837;G:412005765;T:512630567;N:0", 50, null, null, null, 504582681, 405014837, 412005765, 512630567, 0, "SRX7899683", "SRS6307733", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.9324, null, 0.07997, null, 0.77975, null, 0.54924, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57264, "SRR11294123", "SRX7899682", "SRS6307732", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 neg.rep1", "GSM4407927", null, "source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 neg.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured Tgtp53M214K zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407927", "GSM4407927: Ventricles  uninj p53 neg.rep1; Danio rerio; RNA Seq", "GSM4407927", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407927", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAGRAAPEI-519_1.fq.gz", "fastq", 1834275500.0, 36685510.0, "GSM4407927 r1", "0:50", "A:505039122;C:403354337;G:413206780;T:512675261;N:0", 50, null, null, null, 505039122, 403354337, 413206780, 512675261, 0, "SRX7899682", "SRS6307732", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93529, null, 0.07696, null, 0.77268, null, 0.49743, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57265, "SRR11294122", "SRX7899681", "SRS6307731", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 pos.rep3", "GSM4407926", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 pos.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407926", "GSM4407926: Ventricles  inj p53 pos.rep3; Danio rerio; RNA Seq", "GSM4407926", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407926", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAFRAAPEI-518_1.fq.gz", "fastq", 1835175950.0, 36703519.0, "GSM4407926 r1", "0:50", "A:499063627;C:408145558;G:418471943;T:509494822;N:0", 50, null, null, null, 499063627, 408145558, 418471943, 509494822, 0, "SRX7899681", "SRS6307731", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92833, null, 0.09812, null, 0.73312, null, 0.51303, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57266, "SRR11294121", "SRX7899680", "SRS6307730", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 pos.rep2", "GSM4407925", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 pos.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407925", "GSM4407925: Ventricles  inj p53 pos.rep2; Danio rerio; RNA Seq", "GSM4407925", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407925", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAERAAPEI-517_1.fq.gz", "fastq", 1835814750.0, 36716295.0, "GSM4407925 r1", "0:50", "A:502904715;C:405114927;G:414615503;T:513179605;N:0", 50, null, null, null, 502904715, 405114927, 414615503, 513179605, 0, "SRX7899680", "SRS6307730", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92779, null, 0.10001, null, 0.73943, null, 0.49706, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57267, "SRR11294120", "SRX7899679", "SRS6307729", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 pos.rep1", "GSM4407924", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 pos.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407924", "GSM4407924: Ventricles  inj p53 pos.rep1; Danio rerio; RNA Seq", "GSM4407924", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407924", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAARAAPEI-509_1.fq.gz", "fastq", 1835668100.0, 36713362.0, "GSM4407924 r1", "0:50", "A:499256851;C:409731957;G:416052681;T:510626611;N:0", 50, null, null, null, 499256851, 409731957, 416052681, 510626611, 0, "SRX7899679", "SRS6307729", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92969, null, 0.10126, null, 0.73417, null, 0.51885, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57268, "SRR11294119", "SRX7899678", "SRS6307728", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 neg.rep3", "GSM4407923", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 neg.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407923", "GSM4407923: Ventricles  inj p53 neg.rep3; Danio rerio; RNA Seq", "GSM4407923", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407923", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAALRAAPEI-524_1.fq.gz", "fastq", 1835232550.0, 36704651.0, "GSM4407923 r1", "0:50", "A:499303964;C:408224392;G:413995749;T:513708445;N:0", 50, null, null, null, 499303964, 408224392, 413995749, 513708445, 0, "SRX7899678", "SRS6307728", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93048, null, 0.09466, null, 0.73949, null, 0.4978, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57269, "SRR11294118", "SRX7899677", "SRS6307727", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 neg.rep2", "GSM4407922", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 neg.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407922", "GSM4407922: Ventricles  inj p53 neg.rep2; Danio rerio; RNA Seq", "GSM4407922", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407922", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAKRAAPEI-523_1.fq.gz", "fastq", 1835660400.0, 36713208.0, "GSM4407922 r1", "0:50", "A:500792390;C:406784182;G:416023927;T:512059901;N:0", 50, null, null, null, 500792390, 406784182, 416023927, 512059901, 0, "SRX7899677", "SRS6307727", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92669, null, 0.09942, null, 0.72817, null, 0.51645, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57270, "SRR11294117", "SRX7899676", "SRS6307726", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 neg.rep1", "GSM4407921", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 neg.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407921", "GSM4407921: Ventricles  inj p53 neg.rep1; Danio rerio; RNA Seq", "GSM4407921", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407921", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAJRAAPEI-522_1.fq.gz", "fastq", 1835899700.0, 36717994.0, "GSM4407921 r1", "0:50", "A:498483398;C:409943675;G:418983494;T:508489133;N:0", 50, null, null, null, 498483398, 409943675, 418983494, 508489133, 0, "SRX7899676", "SRS6307726", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93061, null, 0.09272, null, 0.73762, null, 0.51108, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [60007, "SRR12109607", "SRX8633610", "SRS6920345", "SRP269241", "PRJNA641989", "Zebrafish intestinal SmallRNA", "PRJNA641989", "Other", "A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.", null, null, null, null, "Drt3", null, "strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of zebrafish intestine", "F", "F", "BGISEQ", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP269241", null, "loader:fastq load.py", "Drt3.fq.gz", "fastq", 953116651.0, 39450392.0, "Drt3.fq.gz", "0:24.16", "A:165275545;C:266933722;G:285524079;T:235383107;N:198", 24, null, null, null, 165275545, 266933722, 285524079, 235383107, 198, "SRX8633610", "SRS6920345", "SRA1092425", "Kunming University of Science and Technology|faculty of life science and technology", "Kunming University of Science and Technology", 1, 0.86243, null, 0.21541, null, 0.80294, null, 0.67181, null, 29, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Adult", "Adult", "Gut", "Digestive System"], [60008, "SRR12109608", "SRX8633609", "SRS6920344", "SRP269241", "PRJNA641989", "Zebrafish intestinal SmallRNA", "PRJNA641989", "Other", "A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.", null, null, null, null, "Drt2", null, "strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of zebrafish intestine", "E", "E", "BGISEQ", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP269241", null, "loader:fastq load.py", "Drt2.fq.gz", "fastq", 629335361.0, 26037543.0, "Drt2.fq.gz", "0:24.17", "A:111827613;C:172564695;G:192159133;T:152783892;N:28", 24, null, null, null, 111827613, 172564695, 192159133, 152783892, 28, "SRX8633609", "SRS6920344", "SRA1092425", "Kunming University of Science and Technology|faculty of life science and technology", "Kunming University of Science and Technology", 1, 0.86328, null, 0.21943, null, 0.7992, null, 0.64786, null, 26, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Adult", "Adult", "Gut", "Digestive System"], [60009, "SRR12109609", "SRX8633608", "SRS6920343", "SRP269241", "PRJNA641989", "Zebrafish intestinal SmallRNA", "PRJNA641989", "Other", "A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.", null, null, null, null, "Drt1", null, "strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of zebrafish intestine", "D", "D", "BGISEQ", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP269241", null, "loader:fastq load.py", "Drt1.fq.gz", "fastq", 898185854.0, 37273958.0, "Drt1.fq.gz", "0:24.10", "A:155257170;C:247725871;G:276963807;T:218238980;N:26", 24, null, null, null, 155257170, 247725871, 276963807, 218238980, 26, "SRX8633608", "SRS6920343", "SRA1092425", "Kunming University of Science and Technology|faculty of life science and technology", "Kunming University of Science and Technology", 1, 0.86686, null, 0.21764, null, 0.79508, null, 0.6694, null, 24, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Adult", "Adult", "Gut", "Digestive System"], [60010, "SRR12109610", "SRX8633607", "SRS6920342", "SRP269241", "PRJNA641989", "Zebrafish intestinal SmallRNA", "PRJNA641989", "Other", "A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.", null, null, null, null, "Drc3", null, "strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of zebrafish intestine", "C", "C", "BGISEQ", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP269241", null, "loader:fastq load.py", "Drc3.fq.gz", "fastq", 912782161.0, 35931507.0, "Drc3.fq.gz", "0:25.40", "A:153448479;C:252628189;G:280829895;T:225874586;N:1012", 25, null, null, null, 153448479, 252628189, 280829895, 225874586, 1012, "SRX8633607", "SRS6920342", "SRA1092425", "Kunming University of Science and Technology|faculty of life science and technology", "Kunming University of Science and Technology", 1, 0.89797, null, 0.21308, null, 0.80823, null, 0.62611, null, 23, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Adult", "Adult", "Gut", "Digestive System"], [60011, "SRR12109611", "SRX8633606", "SRS6920341", "SRP269241", "PRJNA641989", "Zebrafish intestinal SmallRNA", "PRJNA641989", "Other", "A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.", null, null, null, null, "Drc2", null, "strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of zebrafish intestine", "B", "B", "BGISEQ", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP269241", null, "loader:fastq load.py", "Drc2.fq.gz", "fastq", 784553020.0, 31429473.0, "Drc2.fq.gz", "0:24.96", "A:128271350;C:223302609;G:241310233;T:191668193;N:635", 24, null, null, null, 128271350, 223302609, 241310233, 191668193, 635, "SRX8633606", "SRS6920341", "SRA1092425", "Kunming University of Science and Technology|faculty of life science and technology", "Kunming University of Science and Technology", 1, 0.9087, null, 0.20487, null, 0.80805, null, 0.67324, null, 30, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Adult", "Adult", "Gut", "Digestive System"], [60012, "SRR12109612", "SRX8633605", "SRS6920340", "SRP269241", "PRJNA641989", "Zebrafish intestinal SmallRNA", "PRJNA641989", "Other", "A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.", null, null, null, null, "Drc1", null, "strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "miRNA Seq of zebrafish intestine", "A", "A", "BGISEQ", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP269241", null, "loader:fastq load.py", "Drc1.fq.gz", "fastq", 814894343.0, 32234530.0, "Drc1.fq.gz", "0:25.28", "A:133616147;C:230834630;G:253965304;T:196477437;N:825", 25, null, null, null, 133616147, 230834630, 253965304, 196477437, 825, "SRX8633605", "SRS6920340", "SRA1092425", "Kunming University of Science and Technology|faculty of life science and technology", "Kunming University of Science and Technology", 1, 0.89344, null, 0.21273, null, 0.80738, null, 0.66815, null, 28, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-07-10", "Adult", "Adult", "Gut", "Digestive System"], [60203, "SRR12173066", "SRX8687829", "SRS6966493", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "100B", "GSM4661929", null, "source name:SCA12|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "100B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA12", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661929", "GSM4661929: 100B; Danio rerio; RNA Seq", "GSM4661929", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661929", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "100B_2.fq 100B_1.fq", "fastq fastq", 4300755000.0, 43007550.0, "GSM4661929 r1", "0:100 1:100", "A:1195013481;C:933832983;G:962461499;T:1209447037;N:0", 100, 100, null, null, 1195013481, 933832983, 962461499, 1209447037, 0, "SRX8687829", "SRS6966493", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91912, null, 0.15522, null, 0.71829, null, 0.50865, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60204, "SRR12173065", "SRX8687828", "SRS6966492", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "99B", "GSM4661928", null, "source name:SCA10|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "99B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA10", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661928", "GSM4661928: 99B; Danio rerio; RNA Seq", "GSM4661928", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661928", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "99B_2.fq 99B_1.fq", "fastq fastq", 4953251000.0, 49532510.0, "GSM4661928 r1", "0:100 1:100", "A:1415039103;C:1040525484;G:1060332314;T:1437354099;N:0", 100, 100, null, null, 1415039103, 1040525484, 1060332314, 1437354099, 0, "SRX8687828", "SRS6966492", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91619, null, 0.16544, null, 0.71922, null, 0.51996, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60205, "SRR12173064", "SRX8687827", "SRS6966491", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "121B", "GSM4661927", null, "source name:SCA14|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "121B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA14", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661927", "GSM4661927: 121B; Danio rerio; RNA Seq", "GSM4661927", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661927", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "121B_1.fq 121B_2.fq", "fastq fastq", 4482694600.0, 44826946.0, "GSM4661927 r1", "0:100 1:100", "A:1292365837;C:920169200;G:950296696;T:1319862867;N:0", 100, 100, null, null, 1292365837, 920169200, 950296696, 1319862867, 0, "SRX8687827", "SRS6966491", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90277, null, 0.17799, null, 0.72295, null, 0.51987, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60206, "SRR12173063", "SRX8687826", "SRS6966490", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "97B", "GSM4661926", null, "source name:SCA5|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "97B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA5", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661926", "GSM4661926: 97B; Danio rerio; RNA Seq", "GSM4661926", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661926", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "97B_1.fq 97B_2.fq", "fastq fastq", 5178357000.0, 51783570.0, "GSM4661926 r1", "0:100 1:100", "A:1442148425;C:1119935128;G:1149243236;T:1467030211;N:0", 100, 100, null, null, 1442148425, 1119935128, 1149243236, 1467030211, 0, "SRX8687826", "SRS6966490", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91869, null, 0.1619, null, 0.71047, null, 0.50907, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60207, "SRR12173062", "SRX8687825", "SRS6966489", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "80B", "GSM4661925", null, "source name:SCA8|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "80B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA8", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661925", "GSM4661925: 80B; Danio rerio; RNA Seq", "GSM4661925", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661925", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "80B_1.fq 80B_2.fq", "fastq fastq", 4927736800.0, 49277368.0, "GSM4661925 r1", "0:100 1:100", "A:1384189069;C:1048151377;G:1079300714;T:1416095640;N:0", 100, 100, null, null, 1384189069, 1048151377, 1079300714, 1416095640, 0, "SRX8687825", "SRS6966489", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.9104, null, 0.17333, null, 0.71102, null, 0.50853, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60208, "SRR12173061", "SRX8687824", "SRS6966488", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "79B", "GSM4661924", null, "source name:SCA7|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "79B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA7", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661924", "GSM4661924: 79B; Danio rerio; RNA Seq", "GSM4661924", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661924", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "79B_1.fq 79B_2.fq", "fastq fastq", 5158717400.0, 51587174.0, "GSM4661924 r1", "0:100 1:100", "A:1423369091;C:1127803059;G:1156903341;T:1450641909;N:0", 100, 100, null, null, 1423369091, 1127803059, 1156903341, 1450641909, 0, "SRX8687824", "SRS6966488", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91578, null, 0.15498, null, 0.70841, null, 0.50875, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60209, "SRR12173060", "SRX8687823", "SRS6966487", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "78B", "GSM4661923", null, "source name:SCA6|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "78B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA6", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661923", "GSM4661923: 78B; Danio rerio; RNA Seq", "GSM4661923", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661923", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "78B_2.fq 78B_1.fq", "fastq fastq", 4080284000.0, 40802840.0, "GSM4661923 r1", "0:100 1:100", "A:1146760011;C:872005355;G:893480498;T:1168038136;N:0", 100, 100, null, null, 1146760011, 872005355, 893480498, 1168038136, 0, "SRX8687823", "SRS6966487", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.89506, null, 0.16061, null, 0.7147, null, 0.51109, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60210, "SRR12173059", "SRX8687822", "SRS6966486", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "77B", "GSM4661922", null, "source name:SCA4|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "77B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA4", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661922", "GSM4661922: 77B; Danio rerio; RNA Seq", "GSM4661922", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661922", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "77B_1.fq 77B_2.fq", "fastq fastq", 5053965200.0, 50539652.0, "GSM4661922 r1", "0:100 1:100", "A:1432899891;C:1065155546;G:1092749323;T:1463160440;N:0", 100, 100, null, null, 1432899891, 1065155546, 1092749323, 1463160440, 0, "SRX8687822", "SRS6966486", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90965, null, 0.17028, null, 0.71259, null, 0.51804, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60211, "SRR12173058", "SRX8687821", "SRS6966485", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "95B", "GSM4661921", null, "source name:PH8|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "95B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH8", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661921", "GSM4661921: 95B; Danio rerio; RNA Seq", "GSM4661921", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661921", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "95B_2.fq 95B_1.fq", "fastq fastq", 4984910800.0, 49849108.0, "GSM4661921 r1", "0:100 1:100", "A:1404088729;C:1063272664;G:1094657988;T:1422891419;N:0", 100, 100, null, null, 1404088729, 1063272664, 1094657988, 1422891419, 0, "SRX8687821", "SRS6966485", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91574, null, 0.16729, null, 0.71776, null, 0.51526, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60212, "SRR12173057", "SRX8687820", "SRS6966484", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "94B", "GSM4661920", null, "source name:PH7|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "94B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH7", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661920", "GSM4661920: 94B; Danio rerio; RNA Seq", "GSM4661920", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661920", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "94B_2.fq 94B_1.fq", "fastq fastq", 4973104000.0, 49731040.0, "GSM4661920 r1", "0:100 1:100", "A:1403074698;C:1055981307;G:1089110444;T:1424937551;N:0", 100, 100, null, null, 1403074698, 1055981307, 1089110444, 1424937551, 0, "SRX8687820", "SRS6966484", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91432, null, 0.16183, null, 0.72001, null, 0.51323, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60213, "SRR12173056", "SRX8687819", "SRS6966483", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "93B", "GSM4661919", null, "source name:PH6|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "93B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH6", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661919", "GSM4661919: 93B; Danio rerio; RNA Seq", "GSM4661919", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661919", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "93B_2.fq 93B_1.fq", "fastq fastq", 4896774400.0, 48967744.0, "GSM4661919 r1", "0:100 1:100", "A:1403923710;C:1011507726;G:1048273729;T:1433069235;N:0", 100, 100, null, null, 1403923710, 1011507726, 1048273729, 1433069235, 0, "SRX8687819", "SRS6966483", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91124, null, 0.1598, null, 0.72247, null, 0.54532, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60214, "SRR12173055", "SRX8687818", "SRS6966482", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "92B", "GSM4661918", null, "source name:PH4|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male", "92B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH4", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M", "GSM4661918", "GSM4661918: 92B; Danio rerio; RNA Seq", "GSM4661918", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661918", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "92B_1.fq 92B_2.fq", "fastq fastq", 5153962600.0, 51539626.0, "GSM4661918 r1", "0:100 1:100", "A:1429538166;C:1118723084;G:1151444792;T:1454256558;N:0", 100, 100, null, null, 1429538166, 1118723084, 1151444792, 1454256558, 0, "SRX8687818", "SRS6966482", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91817, null, 0.15904, null, 0.71088, null, 0.51009, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60215, "SRR12173054", "SRX8687817", "SRS6966481", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "75B", "GSM4661917", null, "source name:PH10|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "75B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH10", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661917", "GSM4661917: 75B; Danio rerio; RNA Seq", "GSM4661917", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661917", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "75B_1.fq 75B_2.fq", "fastq fastq", 4868261600.0, 48682616.0, "GSM4661917 r1", "0:100 1:100", "A:1376009816;C:1028298503;G:1057930129;T:1406023152;N:0", 100, 100, null, null, 1376009816, 1028298503, 1057930129, 1406023152, 0, "SRX8687817", "SRS6966481", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.9126, null, 0.1697, null, 0.71638, null, 0.50591, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60216, "SRR12173053", "SRX8687816", "SRS6966480", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "74B", "GSM4661916", null, "source name:PH9|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "74B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH9", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661916", "GSM4661916: 74B; Danio rerio; RNA Seq", "GSM4661916", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661916", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "74B_1.fq 74B_2.fq", "fastq fastq", 5179173200.0, 51791732.0, "GSM4661916 r1", "0:100 1:100", "A:1449133916;C:1117631254;G:1139937410;T:1472470620;N:0", 100, 100, null, null, 1449133916, 1117631254, 1139937410, 1472470620, 0, "SRX8687816", "SRS6966480", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91222, null, 0.16046, null, 0.71029, null, 0.50076, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60217, "SRR12173052", "SRX8687815", "SRS6966479", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "72B", "GSM4661915", null, "source name:PH2|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "72B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH2", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661915", "GSM4661915: 72B; Danio rerio; RNA Seq", "GSM4661915", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661915", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "72B_1.fq 72B_2.fq", "fastq fastq", 5878512600.0, 58785126.0, "GSM4661915 r1", "0:100 1:100", "A:1639773073;C:1271766251;G:1298391071;T:1668582205;N:0", 100, 100, null, null, 1639773073, 1271766251, 1298391071, 1668582205, 0, "SRX8687815", "SRS6966479", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.91084, null, 0.16615, null, 0.70713, null, 0.5033, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60218, "SRR12173051", "SRX8687814", "SRS6966478", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "71B", "GSM4661914", null, "source name:PH1|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female", "71B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "PH1", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F", "GSM4661914", "GSM4661914: 71B; Danio rerio; RNA Seq", "GSM4661914", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661914", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "71B_1.fq 71B_2.fq", "fastq fastq", 2921419400.0, 29214194.0, "GSM4661914 r1", "0:100 1:100", "A:838032642;C:606973028;G:618918524;T:857495206;N:0", 100, 100, null, null, 838032642, 606973028, 618918524, 857495206, 0, "SRX8687814", "SRS6966478", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90765, null, 0.17712, null, 0.71015, null, 0.48691, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60219, "SRR12173050", "SRX8687813", "SRS6966477", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "173B", "GSM4661913", null, "source name:SCA10|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male", "173B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA10", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M", "GSM4661913", "GSM4661913: 173B; Danio rerio; RNA Seq", "GSM4661913", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661913", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "V300016697_L3_DKRT190808OligoTB44-68_1.fq.gz V300016697_L3_DKRT190808OligoTB44-68_2.fq.gz", "fastq fastq", 4933950400.0, 49339504.0, "GSM4661913 r1", "0:100 1:100", "A:1477278267;C:971417805;G:982397108;T:1502857220;N:0", 100, 100, null, null, 1477278267, 971417805, 982397108, 1502857220, 0, "SRX8687813", "SRS6966477", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90094, null, 0.26419, null, 0.73066, null, 0.51886, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60220, "SRR12173049", "SRX8687812", "SRS6966476", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "172B", "GSM4661912", null, "source name:SCA7|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male", "172B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA7", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M", "GSM4661912", "GSM4661912: 172B; Danio rerio; RNA Seq", "GSM4661912", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661912", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "V300016697_L3_DKRT190808OligoTB43-67_1.fq.gz V300016697_L3_DKRT190808OligoTB43-67_2.fq.gz", "fastq fastq", 4916317800.0, 49163178.0, "GSM4661912 r1", "0:100 1:100", "A:1456100891;C:983643530;G:996293468;T:1480279911;N:0", 100, 100, null, null, 1456100891, 983643530, 996293468, 1480279911, 0, "SRX8687812", "SRS6966476", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90484, null, 0.24497, null, 0.72563, null, 0.51605, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60221, "SRR12173048", "SRX8687811", "SRS6966475", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "171B", "GSM4661911", null, "source name:SCA5|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male", "171B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA5", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M", "GSM4661911", "GSM4661911: 171B; Danio rerio; RNA Seq", "GSM4661911", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661911", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "V300016697_L3_DKRT190808OligoTB42-66_1.fq.gz V300016697_L3_DKRT190808OligoTB42-66_2.fq.gz", "fastq fastq", 4935261800.0, 49352618.0, "GSM4661911 r1", "0:100 1:100", "A:1445056643;C:1003559733;G:1015728708;T:1470916716;N:0", 100, 100, null, null, 1445056643, 1003559733, 1015728708, 1470916716, 0, "SRX8687811", "SRS6966475", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90817, null, 0.23047, null, 0.72086, null, 0.5134, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60222, "SRR12173047", "SRX8687810", "SRS6966474", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "170B", "GSM4661910", null, "source name:SCA3|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male", "170B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA3", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", null, "tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M", "GSM4661910", "GSM4661910: 170B; Danio rerio; RNA Seq", "GSM4661910", null, "1", "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol", "GEO Accession:GSM4661910", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP270926", null, null, "V300016697_L3_DKRT190808OligoTB41-65_1.fq.gz V300016697_L3_DKRT190808OligoTB41-65_2.fq.gz", "fastq fastq", 4925193600.0, 49251936.0, "GSM4661910 r1", "0:100 1:100", "A:1463488890;C:982336799;G:993110731;T:1486257180;N:0", 100, 100, null, null, 1463488890, 982336799, 993110731, 1486257180, 0, "SRX8687810", "SRS6966474", "SRA1096323", "GEO", "UMR MARBEC, INRAE", 1, 0.90727, null, 0.24322, null, 0.72659, null, 0.52026, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "France", "2020-07-08", "Adult", "Adult", "Brain", "Nervous System"], [60223, "SRR12173046", "SRX8687809", "SRS6966473", "SRP270926", "PRJNA644883", "Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L", "GSE154020", "Transcriptome Analysis", "In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "168B", "GSM4661909", null, "source name:SCA9|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:female", "168B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA9", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. 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Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus  we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0  genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations  mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "167B", "GSM4661908", null, "source name:SCA8|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:female", "167B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA8", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. 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Overall design: RNA sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation", null, "pubmed:33752003", null, "166B", "GSM4661907", null, "source name:SCA6|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:female", "166B", "Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.", "SCA6", null, "Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and RNA was extracted using TriPrep extraction kit Macherey Nagel. 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"expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", 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