{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where devstage_curation = \"Adult\" and experiment.library_selection = \"PCR\"", "rows": [[28496, "SRR26321412", "SRX22029502", "SRS19102283", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 1", "R27", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R27", "R27", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R27.fastq", "fastq", 23400.0, 312.0, "R27.fastq", "0:75", "A:7949;C:4612;G:4730;T:6100;N:9", 75, null, null, null, 7949, 4612, 4730, 6100, 9, "SRX22029502", "SRS19102283", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89642, null, 0.06772, null, 0.99827, null, 0.75, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28497, "SRR26321413", "SRX22029501", "SRS19102284", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 4", "R22", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R22", "R22", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R22.fastq", "fastq", 23400.0, 312.0, "R22.fastq", "0:75", "A:7470;C:4460;G:5063;T:6404;N:3", 75, null, null, null, 7470, 4460, 5063, 6404, 3, "SRX22029501", "SRS19102284", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87073, null, 0.12167, null, 0.99801, null, 0.73157, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28498, "SRR26321414", "SRX22029500", "SRS19102281", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "R21", "R21", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R21", "R21", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R21.fastq", "fastq", 23400.0, 312.0, "R21.fastq", "0:75", "A:7540;C:4349;G:4857;T:6646;N:8", 75, null, null, null, 7540, 4349, 4857, 6646, 8, "SRX22029500", "SRS19102281", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.8839, null, 0.04494, null, 0.99768, null, 0.72769, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28499, "SRR26321415", "SRX22029499", "SRS19102282", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 2", "R18", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R18", "R18", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R18.fastq", "fastq", 23400.0, 312.0, "R18.fastq", "0:75", "A:7380;C:4430;G:5069;T:6518;N:3", 75, null, null, null, 7380, 4430, 5069, 6518, 3, "SRX22029499", "SRS19102282", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87259, null, 0.11196, null, 0.99784, null, 0.69791, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28500, "SRR26321416", "SRX22029498", "SRS19102280", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "1dpci 1", "R17", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 1 dpci", "R17", "R17", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R17.fastq", "fastq", 23400.0, 312.0, "R17.fastq", "0:75", "A:7322;C:4455;G:5111;T:6507;N:5", 75, null, null, null, 7322, 4455, 5111, 6507, 5, "SRX22029498", "SRS19102280", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90439, null, 0.12749, null, 0.99813, null, 0.71052, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28501, "SRR26321417", "SRX22029497", "SRS19102279", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 5", "R1", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R1", "R1", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R1.fastq", "fastq", 23400.0, 312.0, "R1.fastq", "0:75", "A:7934;C:4560;G:4922;T:5980;N:4", 75, null, null, null, 7934, 4560, 4922, 5980, 4, "SRX22029497", "SRS19102279", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87045, null, 0.10526, null, 0.99805, null, 0.71978, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28502, "SRR26321418", "SRX22029496", "SRS19102277", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 4", "R64", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R64", "R64", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R64.fastq", "fastq", 23400.0, 312.0, "R64.fastq", "0:75", "A:7844;C:4626;G:4804;T:6126;N:0", 75, null, null, null, 7844, 4626, 4804, 6126, 0, "SRX22029496", "SRS19102277", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90119, null, 0.07509, null, 0.99839, null, 0.8, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28503, "SRR26321419", "SRX22029495", "SRS19102278", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 3", "R61", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R61", "R61", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R61.fastq", "fastq", 23400.0, 312.0, "R61.fastq", "0:75", "A:7454;C:4556;G:4960;T:6425;N:5", 75, null, null, null, 7454, 4556, 4960, 6425, 5, "SRX22029495", "SRS19102278", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89098, null, 0.06015, null, 0.99813, null, 0.77102, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28504, "SRR26321420", "SRX22029494", "SRS19102276", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 4", "30", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "30", "30", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "30.fastq", "fastq", 23400.0, 312.0, "30.fastq", "0:75", "A:7732;C:4528;G:5150;T:5987;N:3", 75, null, null, null, 7732, 4528, 5150, 5987, 3, "SRX22029494", "SRS19102276", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.88447, null, 0.13147, null, 0.99772, null, 0.71584, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28505, "SRR26321421", "SRX22029493", "SRS19102275", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "R11", "R11", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "R11", "R11", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R11.fastq", "fastq", 23400.0, 312.0, "R11.fastq", "0:75", "A:7818;C:4507;G:5107;T:5956;N:12", 75, null, null, null, 7818, 4507, 5107, 5956, 12, "SRX22029493", "SRS19102275", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.89345, null, 0.11475, null, 0.99847, null, 0.82258, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28506, "SRR26321422", "SRX22029492", "SRS19102274", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 2", "31", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "31", "31", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "31.fastq", "fastq", 23400.0, 312.0, "31.fastq", "0:75", "A:7470;C:4619;G:4802;T:6504;N:5", 75, null, null, null, 7470, 4619, 4802, 6504, 5, "SRX22029492", "SRS19102274", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87699, null, 0.11111, null, 0.99829, null, 0.78918, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28507, "SRR26321423", "SRX22029491", "SRS19102273", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "7dpci 1", "R9", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 7 dpci", "R9", "R9", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R9.fastq", "fastq", 23400.0, 312.0, "R9.fastq", "0:75", "A:8130;C:4537;G:4809;T:5917;N:7", 75, null, null, null, 8130, 4537, 4809, 5917, 7, "SRX22029491", "SRS19102273", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.83588, null, 0.05725, null, 0.99801, null, 0.68586, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28508, "SRR26321424", "SRX22029490", "SRS19102272", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 4", "R33", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R33", "R33", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R33.fastq", "fastq", 23400.0, 312.0, "R33.fastq", "0:75", "A:7745;C:4421;G:4867;T:6360;N:7", 75, null, null, null, 7745, 4421, 4867, 6360, 7, "SRX22029490", "SRS19102272", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.87259, null, 0.07335, null, 0.99805, null, 0.71428, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28509, "SRR26321425", "SRX22029489", "SRS19102271", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 3", "R31", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R31", "R31", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R31.fastq", "fastq", 23400.0, 312.0, "R31.fastq", "0:75", "A:7441;C:4483;G:5163;T:6313;N:0", 75, null, null, null, 7441, 4483, 5163, 6313, 0, "SRX22029489", "SRS19102271", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.9, null, 0.05925, null, 0.9977, null, 0.68325, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28510, "SRR26321426", "SRX22029488", "SRS19102270", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "3dpci 2", "R29", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver 3 dpci", "R29", "R29", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R29.fastq", "fastq", 23400.0, 312.0, "R29.fastq", "0:75", "A:7379;C:4698;G:5166;T:6156;N:1", 75, null, null, null, 7379, 4698, 5166, 6156, 1, "SRX22029488", "SRS19102270", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.91016, null, 0.05859, null, 0.99797, null, 0.74528, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28511, "SRR26321427", "SRX22029487", "SRS19102269", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, null, "SHAM 2", "R62", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R62", "R62", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R62.fastq", "fastq", 23400.0, 312.0, "R62.fastq", "0:75", "A:7383;C:4566;G:4713;T:6728;N:10", 75, null, null, null, 7383, 4566, 4713, 6728, 10, "SRX22029487", "SRS19102269", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.91571, null, 0.05363, null, 0.99835, null, 0.77674, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28512, "SRR26321428", "SRX22029486", "SRS19102268", "SRP465132", "PRJNA1025903", "Zebrafish cryoinjury regeneration Raw sequence reads", "PRJNA1025903", "Whole Genome Sequencing", "Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury", null, null, "Replicate 1 for SHAM", "SHAM 1", "R63", null, "strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia: Melbourne|sex:male|tissue:Liver|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish liver sham", "R63", "R63", "ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP465132", null, null, "R63.fastq", "fastq", 23400.0, 312.0, "R63.fastq", "0:75", "A:7516;C:4606;G:4765;T:6508;N:5", 75, null, null, null, 7516, 4606, 4765, 6508, 5, "SRX22029486", "SRS19102268", "SRA1727674", "Peter MacCallum Cancer Centre|Organogenesis and Cancer", "Peter MacCallum Cancer Centre", 1, 0.90385, null, 0.0423, null, 0.99805, null, 0.72429, null, 75, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "random_priming", "unknown", "bulk", "bulk", "bulk", null, "Australia", "2023-10-11", "Adult", "Adult", "Liver", "Liver and Biliary System"], [28513, "SRR31643557", "SRX27006657", "SRS23471106", "SRP467901", "PRJNA1026724", "vertebrate lungs", "PRJNA1026724", "Other", "We provide comprehensive datasets including RNA Seq and single cell RNA sequencing scRAN seq of multiple tissues for white spotted bamboo shark  scRNA seq of multiple tissues of the African lungfish and Senegal bichir  genome of the bearded dragon  scRAN seq of African bullfrog lung and central bearded dragon lung and H3k27ac and H3k4me1 CUT&amp;Tag sequencing data of chicken embryonic lungs from stage E9 to study the origin and evelution of vertebrate lungs.", null, "pubmed:39953253", null, null, "zebrafish", null, "strain:Cyprinidae|age:adult|collection date:2021 09|geo loc name:China: Wuhan city  Wuhan Province|sex:not collected|tissue:swim bladder|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "scRNA Seq of zebrafish :swim blader", "zebrafish swimbladder", "zebrafish swimbladder", "sequencing for single cell gene expression", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP467901", null, null, "Dr_Sb-3_S1_L003_R2_001.fastq.gz 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"SRP509709", null, null, "G4_2.fq.gz G4_1.fq.gz G3_2.fq.gz G3_1.fq.gz G2_2.fq.gz G2_1.fq.gz G1_2.fq.gz G1_1.fq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq", 48293186700.0, 160977289.0, "G1 1.fq.gz", "0:150 1:150", "A:12737664564;C:11515099418;G:11506913376;T:12532403181;N:1106161", 150, 150, null, null, 12737664564, 11515099418, 11506913376, 12532403181, 1106161, "SRX24679080", "SRS21413711", "SRA1876810", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina", "CIIMAR - Interdisciplinary Centre of Marine and Environmental Research", 2, 0.93531, 0.93628, 0.04883, 0.04847, 0.66707, 0.66728, 0.47213, 0.47226, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Portugal", "2024-05-24", "Adult", "Adult", "Gonad", "Reproductive System"], [32365, "SRR29157961", "SRX24679079", "SRS21413710", "SRP509709", "PRJNA1115529", "Danio rerio Raw sequence reads of gonadal tissue", "PRJNA1115529", "Whole Genome Sequencing", "Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected", null, null, "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis", "Model organism or animal sample from Danio rerio", "Testis CTRL", null, "strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "zebrafish testis RNA seq from Control", "Testis CTRL", "Testis CTRL", "The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis", null, null, "RNA-Seq", 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[33609, "SRR30247666", "SRX25709110", "SRS22350227", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3", "KO3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3", "hey25nt /  replicate 3", "hey25nt /  replicate 3", "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP526520", null, null, "KO_3_1.fq.gz KO_3_2.fq.gz", "fastq fastq", 6793426200.0, 22644754.0, "KO 3 1.fq.gz", "0:150 1:150", "A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253", 150, 150, null, null, 1845779030, 1550159613, 1539592354, 1857860950, 34253, "SRX25709110", "SRS22350227", "SRA1948261", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94555, 0.92523, 0.0631, 0.06139, 0.76672, 0.76968, 0.56501, 0.57019, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [33610, "SRR30247667", "SRX25709109", "SRS22350226", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey25nt /  mutantzebrafish hearts at 3 mpf  rep2", "KO2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep2", "hey25nt /  replicate 2", "hey25nt /  replicate 2", "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP526520", null, null, "KO_2_1.fq.gz KO_2_2.fq.gz", "fastq fastq", 6577703400.0, 21925678.0, "KO 2 1.fq.gz", "0:150 1:150", "A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044", 150, 150, null, null, 1795319867, 1492750718, 1485718638, 1803881133, 33044, "SRX25709109", "SRS22350226", "SRA1948261", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94565, 0.92404, 0.06212, 0.06008, 0.77281, 0.77546, 0.55478, 0.56589, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [33611, "SRR30247668", "SRX25709108", "SRS22350225", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1", "KO1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1", "hey25nt /  replicate 1", "hey25nt /  replicate 1", "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP526520", null, null, "KO_1_2.fq.gz KO_1_1.fq.gz", "fastq fastq", 6592159500.0, 21973865.0, "KO 1 1.fq.gz", "0:150 1:150", "A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050", 150, 150, null, null, 1800707634, 1491918482, 1484850929, 1814648405, 34050, "SRX25709108", "SRS22350225", "SRA1948261", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94443, 0.92689, 0.06601, 0.06488, 0.76883, 0.77033, 0.58332, 0.52175, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [33612, "SRR30247669", "SRX25709107", "SRS22350224", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3", "WT3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3", "hey2+/+ replicate 3", "hey2+/+ replicate 3", "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP526520", null, null, "WT_3_1.fq.gz WT_3_2.fq.gz", "fastq fastq", 6582842700.0, 21942809.0, "WT 3 1.fq.gz", "0:150 1:150", "A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159", 150, 150, null, null, 1796301568, 1494922823, 1487154319, 1804427831, 36159, "SRX25709107", "SRS22350224", "SRA1948261", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94446, 0.92023, 0.06492, 0.06289, 0.76694, 0.7699, 0.55651, 0.53407, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [33613, "SRR30247670", "SRX25709106", "SRS22350223", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2", "WT2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2", "hey2+/+ replicate 2", "hey2+/+ replicate 2", "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP526520", null, null, "WT_2_2.fq.gz WT_2_1.fq.gz", "fastq fastq", 6632526000.0, 22108420.0, "WT 2 1.fq.gz", "0:150 1:150", "A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298", 150, 150, null, null, 1811392253, 1505075703, 1495091968, 1820928778, 37298, "SRX25709106", "SRS22350223", "SRA1948261", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94532, 0.92096, 0.06496, 0.06227, 0.76564, 0.76909, 0.56754, 0.57117, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [33614, "SRR30247671", "SRX25709105", "SRS22350222", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1", "WT1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1", "hey2+/+ replicate 1", "hey2+/+ replicate 1", "RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP526520", null, null, "WT_1_1.fq.gz WT_1_2.fq.gz", "fastq fastq", 6601461900.0, 22004873.0, "WT 1 1.fq.gz", "0:150 1:150", "A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021", 150, 150, null, null, 1816453592, 1485325900, 1476423985, 1823223402, 35021, "SRX25709105", "SRS22350222", "SRA1948261", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.9482, 0.92609, 0.05744, 0.0553, 0.77423, 0.77699, 0.53884, 0.54075, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-08-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [33833, "SRR31441376", "SRX26810183", "SRS22696876", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", "HO 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for HO 2", "HO 1", "HO 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600987--HO_2H.R1.raw.fastq.gz L1EHF0600987--HO_2H.R2.raw.fastq.gz", "fastq fastq", 6373025366.0, 21102733.0, "L1EHF0600987  HO 2H.R1.raw.fastq.gz", "0:151 1:151", "A:1745363166;C:1436102356;G:1463099869;T:1728443182;N:16793", 151, 151, null, null, 1745363166, 1436102356, 1463099869, 1728443182, 16793, "SRX26810183", "SRS22696876", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-22", "Adult", "Adult", "Heart", "Cardiovascular System"], [33834, "SRR30732053", "SRX26134987", "SRS22696876", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", "HO 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for HO 1", "HO 1", "HO 1", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600986--H0_1H.R1.raw.fastq.gz L1EHF0600986--H0_1H.R2.raw.fastq.gz", "fastq fastq", 6369597666.0, 21091383.0, "L1EHF0600986  H0 1H.R1.raw.fastq.gz", "0:151 1:151", "A:1718159779;C:1459536211;G:1492957247;T:1698927602;N:16827", 151, 151, null, null, 1718159779, 1459536211, 1492957247, 1698927602, 16827, "SRX26134987", "SRS22696876", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-19", "Adult", "Adult", "Heart", "Cardiovascular System"], [33835, "SRR30732054", "SRX26134986", "SRS22696875", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2", "WT 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 2", "WT 2", "WT 2", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600985--WT_2H.R1.raw.fastq.gz L1EHF0600985--WT_2H.R2.raw.fastq.gz", "fastq fastq", 6431668934.0, 21296917.0, "L1EHF0600985  WT 2H.R1.raw.fastq.gz", "0:151 1:151", "A:1743394409;C:1464490412;G:1498514260;T:1725252317;N:17536", 151, 151, null, null, 1743394409, 1464490412, 1498514260, 1725252317, 17536, "SRX26134986", "SRS22696875", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-09-19", "Adult", "Adult", "Heart", "Cardiovascular System"], [33836, "SRR30732055", "SRX26134985", "SRS22696874", "SRP533745", "PRJNA1163016", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish", "PRJNA1163016", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.", null, null, null, "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1", "WT 1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 1", "WT 1", "WT 1", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP533745", null, null, "L1EHF0600984--WT_1H.R1.raw.fastq.gz L1EHF0600984--WT_1H.R2.raw.fastq.gz", "fastq fastq", 6277896574.0, 20787737.0, "L1EHF0600984  WT 1H.R1.raw.fastq.gz", "0:151 1:151", 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null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for WT 2", "WT 2", "WT 2", "RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP546933", null, null, "L1EIA1200823-WT_2.R1.raw.fastq.gz L1EIA1200823-WT_2.R2.raw.fastq.gz", "fastq fastq", 7322202306.0, 24245703.0, "L1EIA1200823 WT 2.R1.raw.fastq.gz", "0:151 1:151", "A:2040218817;C:1615688362;G:1649087360;T:2012040914;N:5166853", 151, 151, null, null, 2040218817, 1615688362, 1649087360, 2012040914, 5166853, "SRX26810032", "SRS23295245", null, null, "Guangdong Cardiovascular Institute", null, null, null, 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However  the underlying cardiovascular pathological mechanisms remain elusive. 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However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.", null, null, null, "RNA Seq for Type2B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1", "Type2B 2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 06|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for Type2B 2", "Type2B 2", "Type2B 2", "RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP547192", null, null, "L1EHF0600993--Type2B_2.R1.raw.fastq.gz L1EHF0600993--Type2B_2.R2.raw.fastq.gz", "fastq fastq", 8451570566.0, 27985333.0, "L1EHF0600993  Type2B 2.R1.raw.fastq.gz", "0:151 1:151", "A:2206016865;C:2013747714;G:2053206643;T:2178577239;N:22105", 151, 151, null, null, 2206016865, 2013747714, 2053206643, 2178577239, 22105, "SRX26848531", "SRS23332377", null, null, "Guangdong Cardiovascular Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-11-24", "Adult", "Adult", "Heart", "Cardiovascular System"], [34201, "SRR31479989", "SRX26848530", "SRS23332376", "SRP547192", "PRJNA1189851", "Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale", "PRJNA1189851", "Other", "PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. 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