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contig_metadata

4,433 rows where tax_phylum = "Artverviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4,433 ✖

tax_phylum 1

  • Artverviricota · 4,433 ✖

tax_kingdom 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20863 20863 PRJEB12982_P_NODE_11921_length_204_cov_0.890323_g11758_i0 PRJEB12982 11921 204 0.890323 1.81625892 Lentivirus humimdef1 3418650 Viruses Viruses 305 1.24e-78   NTclustered gi|1798179464|gb|MN694982.1| 11676 g11758 i0 93.627 94.8725490196078 204 13 100 0 1 204 1114 1317 HIV-1 isolate C115329 from Uganda gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; tat protein (tat) and rev protein (rev) genes, partial cds; vpu protein (vpu) gene, complete cds; and envelope glycoprotein (env) gene, partial cds blastn 19354 305 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
21080 21080 PRJEB12982_P_NODE_7681_length_261_cov_1.141509_g7518_i0 PRJEB12982 7681 261 1.141509 2.97933849 Lentivirus humimdef1 3418650 Viruses Viruses 372 1.61e-98   NTclustered gi|920764021|gb|KT283806.1| 11676 g7518 i0 92.366 100.463601532567 262 18 100 2 1 261 989 1249 HIV-1 isolate P1031_8.07_7A from USA envelope glycoprotein (env) gene, complete cds blastn 26221 372 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
55900 55900 PRJEB3118_S_NODE_121_length_553_cov_25216.581081_g108_i0 PRJEB3118 121 553 25216.581081 139447.69337793 Lentivirus humimdef1 3418650 Viruses Viruses 91.6 1.15e-13   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g108 i0 98.077 9.77034358047016 52 1 9 0 502 553 9463 9514 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 5403 91.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
55901 55901 PRJEB3118_S_NODE_1221_length_277_cov_52943.495868_g1186_i0 PRJEB3118 1221 277 52943.495868 146653.48355436 Lentivirus humimdef1 3418650 Viruses Viruses 91.6 5.4e-14   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g1186 i0 98.077 19.3393501805054 52 1 19 0 226 277 9463 9514 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 5357 91.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
57809 57809 PRJEB39643_P_NODE_21081_length_396_cov_3.102167_g20888_i0 PRJEB39643 21081 396 3.102167 12.28458132 Gammaretrovirus murleu 3428959 Viruses Viruses 593 5.019999999999998e-165   NTclustered gi|1167936838|gb|KY574516.1| 11786 g20888 i0 93.687 93.7373737373737 396 25 100 0 1 396 7598 7203 Murine leukemia virus isolate M965-Akv1-MCF, complete genome blastn 37120 593 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
138650 138650 PRJEB7614_P_NODE_4661_length_195_cov_4.253012_g4594_i0 PRJEB7614 4661 195 4.253012 8.2933734 Lentivirus humimdef1 3418650 Viruses Viruses 300 5.4500000000000004e-77   NTclustered gi|14039091|gb|AF219268.1|AF219268 11676 g4594 i0 94.416 100.302564102564 197 8 99 3 1 194 1711 1515 HIV-1 isolate FIN9257 from Finland vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds blastn 19559 300 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
138651 138651 PRJEB7614_P_NODE_5561_length_183_cov_1.396104_g5494_i0 PRJEB7614 5561 183 1.396104 2.55487032 Lentivirus humimdef1 3418650 Viruses Viruses 278 2.36e-70   NTclustered gi|1625847803|gb|MK384855.1| 11676 g5494 i0 93.989 100.109289617486 183 11 100 0 1 183 2963 3145 HIV-1 isolate 373Pt3-2001-P13G9 from USA defective genome blastn 18320 278 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
144888 144888 PRJEB8827_P_NODE_1861_length_185_cov_6.096154_g1839_i0 PRJEB8827 1861 185 6.096154 11.2778849 Lentivirus humimdef1 3418650 Viruses Viruses 200 5.329999999999998e-47   NTclustered gi|1328390092|gb|MG197093.1| 11676 g1839 i0 88.69 91.2810810810811 168 13 91 5 18 185 6952 6791 HIV-1 isolate 505_1730a.WG05 from USA nonfunctional gag protein (gag) gene, complete sequence; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds blastn 16887 200 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
193083 193083 PRJNA1081449_S_NODE_501_length_1308_cov_12.205534_g443_i0 PRJNA1081449 501 1308 12.205534 159.64838472 Gammaretrovirus murleu 3428959 Viruses Viruses 787 5.879999999999998e-285   NR 8WUS_E 11801 g443 i0 98.7 7.11926605504587 388 5 89 0 143 1306 19 406 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 9312 787 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
195421 195421 PRJNA1091388_P_NODE_4521_length_437_cov_1.447802_g4323_i0 PRJNA1091388 4521 437 1.447802 6.32689474 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 808 0   NTclustered gi|221326511|gb|FJ544576.1| 590745 g4323 i0 100 68.6727688787185 437 0 100 0 1 437 2596 3032 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 30010 808 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus
221501 221501 PRJNA1112809_P_NODE_83081_length_373_cov_1.720000_g79806_i0 PRJNA1112809 83081 373 1.72 6.4156 Gammaretrovirus murleu 3428959 Viruses Viruses 488 2.2799999999999993e-133   NTclustered gi|1443026875|gb|MH450110.1| 11837 g79806 i0 90.349 118.522788203753 373 35 100 1 1 373 8188 7817 Xenotropic murine leukemia virus isolate AKR6, complete genome blastn 44209 488 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
235631 235631 PRJNA1120060_P_NODE_1279081_length_308_cov_2.685106_g1261136_i0 PRJNA1120060 1279081 308 2.685106 8.27012648 Pinus nigra virus 1 2267679 Viruses Viruses 102 6.76e-23   NR AXB54821.1 2267679 g1261136 i0 93.9 0.477272727272727 49 3 47.7 0 162 308 1285 1333 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 147 102 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
239406 239406 PRJNA1120060_P_NODE_1542061_length_291_cov_3.394495_g1524070_i0 PRJNA1120060 1542061 291 3.394495 9.87798045 Pinus nigra virus 1 2267679 Viruses Viruses 154 3.21e-41   NR AXB54821.1 2267679 g1524070 i0 89 0.845360824742268 82 9 84.5 0 247 2 1281 1362 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 246 154 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
241655 241655 PRJNA1120060_P_NODE_1707061_length_284_cov_14.251185_g1689057_i0 PRJNA1120060 1707061 284 14.251185 40.4733654 Gammaretrovirus felleu 3428951 Viruses Viruses 392 1.3599999999999997e-104   NTclustered gi|1249614576|dbj|AB898926.1| 11768 g1689057 i0 91.549 1 284 24 100 0 1 284 1489 1206 Feline leukemia virus gene for gag-pol polyprotein gPr80, partial sequence, clone: g45-5R blastn 284 392 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus felleu
256852 256852 PRJNA1120060_P_NODE_2882661_length_244_cov_1.450292_g2864572_i0 PRJNA1120060 2882661 244 1.450292 3.53871248 Pinus nigra virus 1 2267679 Viruses Viruses 127 6.49e-32   NR AXB54821.1 2267679 g2864572 i0 70.4 0.995901639344262 81 24 99.6 0 1 243 1335 1415 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 243 127 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
262849 262849 PRJNA1120060_P_NODE_340821_length_405_cov_4.102410_g323568_i0 PRJNA1120060 340821 405 4.10241 16.6147605 Pinus nigra virus 1 2267679 Viruses Viruses 223 2.2e-64   NR AXB54821.1 2267679 g323568 i0 77.6 0.992592592592593 134 30 99.3 0 403 2 1190 1323 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 402 223 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
265560 265560 PRJNA1120060_P_NODE_397381_length_389_cov_4.386076_g379965_i0 PRJNA1120060 397381 389 4.386076 17.06183564 Pinus nigra virus 1 2267679 Viruses Viruses 100 1.31e-16   NTclustered gi|1421686372|gb|MH551473.1| 2267679 g379965 i0 92.857 0.539845758354756 70 3 17 2 164 231 6598 6667 Pinus nigra virus 1 isolate S1, complete genome blastn 210 100 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
267583 267583 PRJNA1120060_P_NODE_52641_length_704_cov_3.969889_g41002_i0 PRJNA1120060 52641 704 3.969889 27.94801856 Pinus nigra virus 1 2267679 Viruses Viruses 483 2.0999999999999992e-131   NTclustered gi|1421686370|gb|MH551472.1| 2267679 g41002 i0 79.291 3.00284090909091 705 135 99 10 1 699 6527 5828 Pinus nigra virus 1 isolate BM, complete genome blastn 2114 483 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
282074 282074 PRJNA1126644_P_NODE_2241_length_319_cov_2.266667_g2119_i0 PRJNA1126644 2241 319 2.266667 7.23066773 Moloney murine leukemia virus 11801 Viruses Viruses 187 2.22e-52   NR NP_057933.2 11801 g2119 i0 100 7.70219435736677 91 0 85.6 0 45 317 660 750 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2457 187 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
316456 316456 PRJNA1174776_S_NODE_81_length_1164_cov_12.124888_g63_i0 PRJNA1174776 81 1164 12.124888 141.13369632 Gammaretrovirus murleu 3428959 Viruses Viruses 693 1.22e-248   NR 8WUS_E 11801 g63 i0 98.5 7.07216494845361 343 5 88.4 0 1030 2 19 361 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 8232 693 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
383873 383873 PRJNA315399_P_NODE_68261_length_219_cov_5.620879_g67813_i0 PRJNA315399 68261 219 5.620879 12.30972501 Spiretrovirus homo8524 3117321 Viruses Viruses 363 7.88e-96   NTclustered gi|2710393193|tpg|BK066703.1| 3117321 g67813 i0 100 0.894977168949772 196 0 89 0 16 211 1451 1646 MAG TPA_asm: Spiretrovirus homo8524 isolate Spiretro8524 genomic sequence blastn 196 363 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus homo8524
391197 391197 PRJNA338400_P_NODE_601_length_1062_cov_5.641820_g466_i0 PRJNA338400 601 1062 5.64182 59.9161284 Gammaretrovirus murleu 3428959 Viruses Viruses 1775 0   NTclustered gi|18448741|gb|AF462057.1| 11801 g466 i0 97.409 98.1214689265537 1042 27 98 0 21 1062 2596 3637 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 104205 1775 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
393538 393538 PRJNA348537_S_NODE_1_length_4308_cov_230.754505_g0_i0 PRJNA348537 1 4308 230.754505 9940.9040754 Avian myeloblastosis-associated virus 11960 Viruses Viruses 7574 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i0 98.398 99.897400185701 4308 69 100 0 1 4308 1234 5541 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 430358 7574 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
399777 399777 PRJNA376117_P_NODE_20741_length_303_cov_1.982609_g20439_i0 PRJNA376117 20741 303 1.982609 6.00730527 Gammaretrovirus aviretend 3428948 Viruses Viruses 560 3.79e-155   NTclustered gi|566129537|gb|KF709431.1| 11636 g20439 i0 100 74.009900990099 303 0 100 0 1 303 4696 4394 Reticuloendotheliosis virus strain GD1210, complete genome blastn 22425 560 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
429875 429875 PRJNA432257_S_NODE_55501_length_222_cov_8.956757_g55120_i0 PRJNA432257 55501 222 8.956757 19.88400054 Lentivirus simimdef 3418654 Viruses Viruses 52.8 0.02   NTclustered gi|1877673191|gb|MK686514.1| 11723 g55120 i0 100 0.126126126126126 28 0 13 0 151 178 6066 6093 Simian immunodeficiency virus isolate E11.11D07 nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpx protein (vpx), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nonfunctional nef protein (nef) gene, partial sequence blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
434809 434809 PRJNA438478_P_NODE_3241_length_188_cov_1.218543_g2970_i0 PRJNA438478 3241 188 1.218543 2.29086084 Gammaretrovirus murleu 3428959 Viruses Viruses 307 3.1100000000000005e-79   NTclustered gi|18448741|gb|AF462057.1| 11801 g2970 i0 98.837 63.5691489361702 172 2 91 0 17 188 4123 3952 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 11951 307 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
464190 464190 PRJNA493632_P_NODE_45101_length_632_cov_2.239714_g41902_i0 PRJNA493632 45101 632 2.239714 14.15499248 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 1123 0   NTclustered gi|221326511|gb|FJ544576.1| 590745 g41902 i0 98.734 151.030063291139 632 8 100 0 1 632 5327 4696 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 95451 1123 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus
497154 497154 PRJNA528980_S_NODE_161_length_1840_cov_10.495840_g33_i2 PRJNA528980 161 1840 10.49584 193.123456 Gammaretrovirus murleu 3428959 Viruses Viruses 2889 0   NTclustered gi|996271566|gb|KU324807.1| 11786 g33 i2 95.288 43.8603260869565 1825 80 99 4 1 1822 5474 7295 Murine leukemia virus isolate Cast17/18, complete genome blastn 80703 2889 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
564441 564441 PRJNA578840_S_NODE_1_length_4750_cov_10.246756_g0_i0 PRJNA578840 1 4750 10.246756 486.72091 RD114 retrovirus 11834 Viruses Viruses 8401 0   NTclustered gi|306482054|dbj|AB559882.1| 11834 g0 i0 99.912 58.0581052631579 4561 4 100 0 1 4561 3732 8292 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 275776 8401 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
564448 564448 PRJNA578840_S_NODE_7781_length_185_cov_1.382353_g7640_i0 PRJNA578840 7781 185 1.382353 2.55735305 Gammaretrovirus murleu 3428959 Viruses Viruses 326 8.430000000000001e-85   NTclustered gi|336462523|gb|JF908817.1| 11837 g7640 i0 98.378 99.8486486486486 185 3 100 0 1 185 3136 3320 Xenotropic murine leukemia virus isolate EKVX, partial genome blastn 18472 326 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
598290 598290 PRJNA627266_P_NODE_5721_length_853_cov_2.660448_g5375_i0 PRJNA627266 5721 853 2.660448 22.69362144 Deltaretrovirus bovleu 3428211 Viruses Viruses 1565 0   NTclustered gi|924371543|gb|KT122858.1| 11901 g5375 i0 99.766 100 853 2 100 0 1 853 2871 2019 Bovine leukemia virus isolate YR2, complete genome blastn 85300 1565 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Deltaretrovirus Deltaretrovirus bovleu
611935 611935 PRJNA641707_P_NODE_152481_length_233_cov_7.673913_g149818_i0 PRJNA641707 152481 233 7.673913 17.88021729 Gammaretrovirus murleu 3428959 Viruses Viruses 377 3.03e-100   NTclustered gi|996271182|gb|KU324806.1| 11786 g149818 i0 97.297 95.3304721030043 222 6 95 0 1 222 7552 7331 Murine leukemia virus isolate Kyushu, complete genome blastn 22212 377 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
667007 667007 PRJNA688414_P_NODE_5501_length_261_cov_1.728723_g5467_i0 PRJNA688414 5501 261 1.728723 4.51196703 Gammaretrovirus murleu 3428959 Viruses Viruses 466 7.17e-127   NTclustered gi|331614|gb|K02725.1|MCFENVA 11785 g5467 i0 98.851 100 261 3 100 0 1 261 1203 943 Mink cell focus-forming virus (MCF-MuLV, CI-3 isolate), proviral env gene blastn 26100 466 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
690747 690747 PRJNA704949_P_NODE_1597721_length_193_cov_1.083333_g1582382_i0 PRJNA704949 1597721 193 1.083333 2.09083269 Citrus blight-associated pararetrovirus 2689385 Viruses Viruses 291 3.2399999999999994e-74   NTclustered gi|2288530032|gb|MZ330114.1| 2689385 g1582382 i0 93.782 2 193 12 100 0 1 193 4969 4777 Citrus blight-associated pararetrovirus isolate TL 101/CBaPRV, complete genome blastn 386 291 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus blight-associated pararetrovirus
742864 742864 PRJNA763243_P_NODE_22201_length_339_cov_5.037594_g21855_i0 PRJNA763243 22201 339 5.037594 17.07744366 Betaretrovirus squmon 3427297 Viruses Viruses 588 1.97e-163   NTclustered gi|1666023499|gb|MK561030.1| 11856 g21855 i0 97.935 4.18289085545723 339 7 100 0 1 339 3608 3946 Squirrel monkey retrovirus, complete genome blastn 1418 588 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
781205 781205 PRJNA796975_S_NODE_401_length_646_cov_2.529313_g336_i0 PRJNA796975 401 646 2.529313 16.33936198 Betaretrovirus maspfimon 3427294 Viruses Viruses 1177 0   NTclustered gi|334702|gb|M12349.1|SIVMPCG 11855 g336 i0 99.536 4 646 3 100 0 1 646 4876 5521 Simian Mason-Pfizer D-type retrovirus (MPMV/6A), complete genome blastn 2584 1177 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
794863 794863 PRJNA799842_P_NODE_41181_length_445_cov_1.005376_g39610_i0 PRJNA799842 41181 445 1.005376 4.4739232 Caulimovirus sp. 2692413 Viruses Viruses 580 4.439999999999999e-161   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g39610 i0 90.293 1.19101123595506 443 43 99 0 3 445 3238 3680 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 530 580 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
808795 808795 PRJNA811237_S_NODE_34101_length_162_cov_0.902655_g33861_i0 PRJNA811237 34101 162 0.902655 1.4623011 Lentivirus simimdef 3418654 Viruses Viruses 65.8 1.73e-6   NTclustered gi|331687935|gb|JF741333.1| 11723 g33861 i0 95.122 3.42592592592593 41 2 25 0 1 41 324 284 Simian immunodeficiency virus isolate SIVmac251_1991SIV4_C01 envelope glycoprotein-like (env) gene, partial sequence blastn 555 65.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
838001 838001 PRJNA849646_P_NODE_1001_length_493_cov_3.671429_g884_i0 PRJNA849646 1001 493 3.671429 18.10014497 Gammaretrovirus murleu 3428959 Viruses Viruses 905 0   NTclustered gi|4071074|gb|AF019230.1|AF019230 11786 g884 i0 99.797 99.9634888438134 493 1 100 0 1 493 2288 2780 Murine leukemia virus strain SRS 19-6 complete genome blastn 49282 905 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
842525 842525 PRJNA856288_S_NODE_19221_length_200_cov_1.666667_g19030_i0 PRJNA856288 19221 200 1.666667 3.333334 Lentivirus humimdef1 3418650 Viruses Viruses 200 5.86e-47   NTclustered gi|2514204831|gb|OQ752860.1| 11676 g19030 i0 86 1 200 13 100 8 1 200 1175 991 HIV-1 isolate BC001_proviral_090_LargeDeletion from Canada defective provirus genomic sequence blastn 200 200 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
853318 853318 PRJNA876641_P_NODE_3141_length_414_cov_8.293255_g3067_i0 PRJNA876641 3141 414 8.293255 34.3340757 Gammaretrovirus gibleu 3428953 Viruses Viruses 752 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g3067 i0 99.517 76.9806763285024 414 1 100 1 1 414 8304 7892 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 31870 752 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
879969 879969 PRJNA902356_S_NODE_33861_length_349_cov_1.188406_g33626_i0 PRJNA902356 33861 349 1.188406 4.14753694 Murine leukemia-related retroviruses 99182 Viruses Viruses 638 1.99e-178   NTclustered gi|336087897|emb|FR872816.1| 438045 g33626 i0 99.713 99.810888252149 348 1 99 0 2 349 825 1172 XMRV complete proviral genome, isolate S-162 blastn 34834 638 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
893738 893738 PRJNA912577_P_NODE_4241_length_251_cov_0.865169_g4170_i0 PRJNA912577 4241 251 0.865169 2.17157419 Avian retrovirus 11955 Viruses Viruses 453 5.34e-123   NTclustered gi|1834471271|gb|MN262538.1| 11955 g4170 i0 99.203 99.99203187251 251 2 100 0 1 251 915 1165 Avian retrovirus isolate JX19ND02 env protein (env) gene, partial cds blastn 25098 453 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian retrovirus
909398 909398 PRJNA930380_P_NODE_13521_length_244_cov_0.900585_g13468_i0 PRJNA930380 13521 244 0.900585 2.1974274 Caulimovirus venafragariae 3048344 Viruses Viruses 451 1.86e-122   NTclustered gi|929999488|gb|KR080547.1| 47903 g13468 i0 100 23 244 0 100 0 1 244 889 646 Strawberry vein banding virus isolate BJ, complete genome blastn 5612 451 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus venafragariae
910634 910634 PRJNA934332_P_NODE_5281_length_290_cov_0.921659_g5194_i0 PRJNA934332 5281 290 0.921659 2.6728111 Gammaretrovirus gibleu 3428953 Viruses Viruses 536 6.079999999999999e-148   NTclustered gi|971888245|gb|KT724047.1| 11840 g5194 i0 100 79.3172413793103 290 0 100 0 1 290 2384 2673 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 23002 536 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
914544 914544 PRJNA939369_S_NODE_71821_length_243_cov_0.905882_g71404_i0 PRJNA939369 71821 243 0.905882 2.20129326 Retrovirus rattus8197 3117313 Viruses Viruses 425 1.12e-114   NTclustered gi|2710390889|tpg|BK066447.1| 3117313 g71404 i0 98.347 1.9917695473251 242 4 99 0 2 243 7118 7359 MAG TPA_asm: Retrovirus rattus8197 isolate Retro8197 genomic sequence blastn 484 425 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retrovirus rattus8197
922593 922593 PRJNA942138_P_NODE_28621_length_266_cov_1.430052_g28470_i0 PRJNA942138 28621 266 1.430052 3.80393832 Baboon endogenous virus 196403 Viruses Viruses 486 5.629999999999999e-133   NTclustered gi|61506|emb|X05470.1| 11764 g28470 i0 99.624 3.87218045112782 266 1 100 0 1 266 1085 820 Baboon endogenous virus strain M7 DNA blastn 1030 486 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus
942156 942156 PRJNA966993_P_NODE_46901_length_315_cov_4.198347_g46449_i0 PRJNA966993 46901 315 4.198347 13.22479305 Gammaretrovirus murleu 3428959 Viruses Viruses 577 3.9299999999999986e-160   NTclustered gi|86371744|gb|DQ359272.1| 11786 g46449 i0 99.683 56.9904761904762 315 1 100 0 1 315 327 13 Murine leukemia virus retroviral envelope glycoprotein gene, complete cds blastn 17952 577 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
942687 942687 PRJNA967502_P_NODE_121_length_2417_cov_2.483788_g111_i0 PRJNA967502 121 2417 2.483788 60.03315596 RD114 retrovirus 11834 Viruses Viruses 4458 0   NTclustered gi|306482054|dbj|AB559882.1| 11834 g111 i0 99.959 38.4493173355399 2417 1 100 0 1 2417 8196 5780 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 92932 4458 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
944713 944713 PRJNA971676_P_NODE_2461_length_490_cov_0.750600_g2372_i0 PRJNA971676 2461 490 0.7506 3.67794 Cestrum yellow leaf curling virus 175814 Viruses Viruses 256 4.5500000000000006e-79   NR NP_861410.1 175814 g2372 i0 73 0.997959183673469 163 44 99.8 0 1 489 260 422 NP_861410.1 putative multifunctional pol protein [Cestrum yellow leaf curling virus] diamond 489 256 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Soymovirus Soymovirus crispocestri
946609 946609 PRJNA975724_S_NODE_581_length_944_cov_8.104478_g483_i0 PRJNA975724 581 944 8.104478 76.50627232 Moloney murine leukemia virus 11801 Viruses Viruses 537 1.1299999999999998e-174   NR NP_057933.2 11801 g483 i0 97.5 0.883474576271186 278 7 88.3 0 2 835 1058 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 834 537 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
985830 985830 PRJEB15333_P_NODE_11461_length_201_cov_1.572368_g11377_i0 PRJEB15333 11461 201 1.572368 3.16045968 Alpharetrovirus 153057 Viruses Viruses 366 5.5e-97   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g11377 i0 99.502 99.6417910447761 201 1 100 0 1 201 1984 1784 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 20028 366 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
991434 991434 PRJEB52989_S_NODE_1_length_2413_cov_15.927909_g0_i0 PRJEB52989 1 2413 15.927909 384.34044417 Moloney murine leukemia virus 11801 Viruses Viruses 1295 0   NR NP_057933.2 11801 g0 i0 97.6 2.45793617903025 659 16 81.9 0 142 2118 677 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5931 1295 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1009467 1009467 PRJNA1046144_P_NODE_72021_length_198_cov_8.798450_g71726_i0 PRJNA1046144 72021 198 8.79845 17.420931 Betaretrovirus 140052 Viruses Viruses 361 2.51e-95   NTclustered gi|1666023499|gb|MK561030.1| 11856 g71726 i0 99.495 4 198 1 100 0 1 198 2098 2295 Squirrel monkey retrovirus, complete genome blastn 792 361 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
1011204 1011204 PRJNA1051145_P_NODE_2661_length_242_cov_22.160622_g2647_i0 PRJNA1051145 2661 242 22.160622 53.62870524 Gammaretrovirus 153135 Viruses Viruses 418 1.8699999999999998e-112   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g2647 i0 100 66.1280991735537 226 0 93 0 17 242 3905 4130 Moloney murine leukemia virus, complete genome blastn 16003 418 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1011911 1011911 PRJNA1063685_S_NODE_31841_length_416_cov_1.839650_g31299_i0 PRJNA1063685 31841 416 1.83965 7.652944 root 1 Root_unresolved Root_unresolved 99 5.07e-16   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g31299 i0 95.312 28.3918269230769 64 0 15 1 348 408 9469 9532 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 11811 100 0.99 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1013219 1013219 PRJNA1067370_P_NODE_19661_length_423_cov_1.962857_g19113_i0 PRJNA1067370 19661 423 1.962857 8.30288511 root 1 Root_unresolved Root_unresolved 776 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g19113 i0 99.764 42.8510638297872 423 1 100 0 1 423 937 1359 Moloney murine leukemia virus, complete genome blastn 18126 776 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1016681 1016681 PRJNA1077954_P_NODE_4281_length_593_cov_1.586538_g4046_i0 PRJNA1077954 4281 593 1.586538 9.40817034 Alpharetrovirus 153057 Viruses Viruses 972 0   NTclustered gi|9629900|ref|NC_001866.1| 11867 g4046 i0 100 88.150084317032 526 0 89 0 68 593 3068 2543 Avian myelocytomatosis virus, complete genome blastn 52273 972 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myelocytomatosis virus
1017157 1017157 PRJNA1084193_P_NODE_61_length_3564_cov_2.076769_g46_i0 PRJNA1084193 61 3564 2.076769 74.01604716 Gammaretrovirus 153135 Viruses Viruses 6464 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g46 i0 99.411 96.6773288439955 3563 21 99 0 1 3563 1474 5036 Moloney murine leukemia virus, complete genome blastn 344558 6464 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1024749 1024749 PRJNA1116548_S_NODE_261_length_838_cov_4.854902_g235_i0 PRJNA1116548 261 838 4.854902 40.68407876 Moloney murine leukemia virus 11801 Viruses Viruses 459 4.199999999999998e-146   NR NP_057933.2 11801 g235 i0 97.1 3.40811455847255 238 7 85.2 0 2 715 1081 1318 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2856 459 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1025229 1025229 PRJNA1120060_P_NODE_1210921_length_310_cov_2.763713_g1192981_i0 PRJNA1120060 1210921 310 2.763713 8.5675103 Pinus nigra virus 1 2267679 Viruses Viruses 83.2 5.24e-16   NR AXB54821.1 2267679 g1192981 i0 71.4 0.474193548387097 49 14 47.4 0 149 3 1855 1903 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 147 83.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
1038960 1038960 PRJNA1160211_S_NODE_60681_length_545_cov_15.970339_g59496_i0 PRJNA1160211 60681 545 15.970339 87.03834755 root 1 Root_unresolved Root_unresolved 521 3.4e-143   NTclustered gi|2088546|gb|U87552.1|MLU87552 11786 g59496 i0 99.308 71.702752293578 289 1 53 1 236 523 682 394 Murine leukemia virus integrase (pol) gene, partial cds blastn 39078 521 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1039432 1039432 PRJNA1163532_P_NODE_57821_length_227_cov_1.037975_g57597_i0 PRJNA1163532 57821 227 1.037975 2.35620325 root 1 Root_unresolved Root_unresolved 414 2.2399999999999998e-111   NTclustered gi|1431162561|gb|EU075330.2| 11786 g57597 i0 99.559 18.9383259911894 227 1 100 0 1 227 4000 3774 Mutant Murine leukemia virus clone 4-6w_c7 gag-pro-pol polyprotein gene, complete cds blastn 4299 414 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1041869 1041869 PRJNA1182301_P_NODE_661_length_922_cov_4.368669_g556_i0 PRJNA1182301 661 922 4.368669 40.27912818 root 1 Root_unresolved Root_unresolved 1661 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g556 i0 99.241 99.8926247288503 922 4 100 1 1 922 1976 2894 Moloney murine leukemia virus, complete genome blastn 92101 1661 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1070424 1070424 PRJNA348537_S_NODE_41_length_1097_cov_277.139360_g0_i7 PRJNA348537 41 1097 277.13936 3040.2187792 Alpharetrovirus 153057 Viruses Viruses 1873 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i7 98.584 96.4630811303555 1059 15 97 0 39 1097 4483 5541 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 105820 1884 0.99416135881104 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
1071967 1071967 PRJNA353362_P_NODE_381_length_249_cov_3.320000_g377_i0 PRJNA353362 381 249 3.32 8.2668 root 1 Root_unresolved Root_unresolved 442 1.1399999999999995e-119   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g377 i0 100 98.6385542168675 239 0 96 0 4 242 2850 2612 Moloney murine leukemia virus, complete genome blastn 24561 442 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1087763 1087763 PRJNA429937_P_NODE_79901_length_366_cov_3.804154_g57518_i0 PRJNA429937 79901 366 3.804154 13.92320364 Gammaretrovirus 153135 Viruses Viruses 610 4.569999999999999e-170   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g57518 i0 98.551 92.7513661202186 345 5 94 0 1 345 3907 4251 Moloney murine leukemia virus, complete genome blastn 33947 610 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1089833 1089833 PRJNA437204_P_NODE_44121_length_314_cov_1.261411_g43822_i0 PRJNA437204 44121 314 1.261411 3.96083054 root 1 Root_unresolved Root_unresolved 542 1.43e-149   NTclustered gi|996270423|gb|KU324803.1| 11786 g43822 i0 97.771 100 314 7 100 0 1 314 5353 5666 Murine leukemia virus isolate CAST-X, complete genome blastn 31400 547 0.990859232175503 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1100314 1100314 PRJNA493632_P_NODE_111501_length_435_cov_1.306630_g108091_i0 PRJNA493632 111501 435 1.30663 5.6838405 root 1 Root_unresolved Root_unresolved 795 0   NTclustered gi|57547617|tpd|BR000029.1| 10654 g108091 i0 99.539 31.2896551724138 434 2 99 0 2 435 3223 2790 TPA_inf: Rice tungro bacilliform virus orf x, orf y and orf z genes for hypothetical proteins, isolate:ERTBV-A blastn 13611 802 0.991271820448878 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Tungrovirus Tungrovirus oryzae
1101380 1101380 PRJNA493632_P_NODE_24881_length_815_cov_1.517520_g22146_i0 PRJNA493632 24881 815 1.51752 12.367788 root 1 Root_unresolved Root_unresolved 1467 0   NTclustered gi|57547617|tpd|BR000029.1| 10654 g22146 i0 99.017 82.6687116564417 814 8 99 0 2 815 2108 1295 TPA_inf: Rice tungro bacilliform virus orf x, orf y and orf z genes for hypothetical proteins, isolate:ERTBV-A blastn 67375 1472 0.996603260869565 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Tungrovirus Tungrovirus oryzae
1130570 1130570 PRJNA560932_P_NODE_25641_length_352_cov_1.713262_g25285_i0 PRJNA560932 25641 352 1.713262 6.03068224 Betaretrovirus 140052 Viruses Viruses 651 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g25285 i0 100 3.59659090909091 352 0 100 0 1 352 4365 4014 Squirrel monkey retrovirus - HLB, complete genome blastn 1266 651 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
1139335 1139335 PRJNA592753_P_NODE_54281_length_246_cov_0.890173_g53836_i0 PRJNA592753 54281 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 444 3.14e-120   NTclustered gi|1173658|gb|U36602.1|MLU36602 11786 g53836 i0 99.187 8.5650406504065 246 2 100 0 1 246 874 1119 Murine leukemia virus gPr80 envelope polyprotein precursor (env) mRNA, complete cds blastn 2107 444 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1151940 1151940 PRJNA631119_P_NODE_4381_length_534_cov_2.030369_g4266_i0 PRJNA631119 4381 534 2.030369 10.84217046 Gammaretrovirus 153135 Viruses Viruses 367 1.67e-114   NR ARB03489.1 11786 g4266 i0 98.3 11 178 3 100 0 534 1 760 937 ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 5874 367 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1153497 1153497 PRJNA635201_P_NODE_1_length_8286_cov_7.803361_g0_i0 PRJNA635201 1 8286 7.803361 646.58649246 Betaretrovirus 140052 Viruses Viruses 15029 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g0 i0 99.409 4.37762490948588 8292 35 100 14 1 8286 352 8635 Squirrel monkey retrovirus - HLB, complete genome blastn 36273 15029 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
1163487 1163487 PRJNA667863_P_NODE_17741_length_235_cov_2.240741_g17707_i0 PRJNA667863 17741 235 2.240741 5.26574135 root 1 Root_unresolved Root_unresolved 424 3.87e-114   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g17707 i0 99.149 24.931914893617 235 2 100 0 1 235 6090 6324 Moloney murine leukemia virus, complete genome blastn 5859 424 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1205101 1205101 PRJNA763243_P_NODE_3221_length_752_cov_5.014728_g2944_i0 PRJNA763243 3221 752 5.014728 37.71075456 Betaretrovirus 140052 Viruses Viruses 1225 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g2944 i0 99.263 12.7061170212766 678 5 90 0 1 678 4759 5436 Squirrel monkey retrovirus - HLB, complete genome blastn 9555 1225 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
1212874 1212874 PRJNA783180_P_NODE_1_length_5357_cov_3.024792_g0_i0 PRJNA783180 1 5357 3.024792 162.03810744 Gammaretrovirus 153135 Viruses Viruses 9832 0   NTclustered gi|1233685432|gb|KY484771.1| 194958 g0 i0 99.795 73.0393877170058 5358 10 100 1 1 5357 8522 3165 Porcine endogenous retrovirus A gag-pol polyprotein and env protein genes, complete cds blastn 391272 9832 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus porConc
1224138 1224138 PRJNA811725_P_NODE_41881_length_241_cov_0.916667_g41635_i0 PRJNA811725 41881 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 446 8.519999999999999e-121   NTclustered gi|717462921|gb|KM390026.1| 11676 g41635 i0 100 99.9958506224066 241 0 100 0 1 241 6342 6102 HIV-1 clone NL43I151V from USA, complete genome blastn 24099 446 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1236836 1236836 PRJNA862882_S_NODE_21_length_2435_cov_56.474498_g5_i0 PRJNA862882 21 2435 56.474498 1375.1540263 Moloney murine leukemia virus 11801 Viruses Viruses 1295 0   NR NP_057933.2 11801 g5 i0 97.6 2.43572895277207 659 16 81.2 0 2295 319 677 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5931 1295 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1240599 1240599 PRJNA880781_P_NODE_6461_length_439_cov_2.095628_g6357_i0 PRJNA880781 6461 439 2.095628 9.19980692 Alpharetrovirus 153057 Viruses Viruses 798 0   NTclustered gi|9629900|ref|NC_001866.1| 11867 g6357 i0 99.543 99.1138952164009 438 2 99 0 2 439 2974 2537 Avian myelocytomatosis virus, complete genome blastn 43511 804 0.992537313432836 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myelocytomatosis virus
1245855 1245855 PRJNA900062_P_NODE_53121_length_378_cov_1.491803_g50939_i0 PRJNA900062 53121 378 1.491803 5.63901534 Alpharetrovirus 153057 Viruses Viruses 689 0   NTclustered gi|9629900|ref|NC_001866.1| 11867 g50939 i0 99.734 99.5608465608466 376 1 99 0 2 377 2972 2597 Avian myelocytomatosis virus, complete genome blastn 37634 695 0.99136690647482 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myelocytomatosis virus
1248359 1248359 PRJNA906294_P_NODE_1561_length_3650_cov_888.655857_g51_i15 PRJNA906294 1561 3650 888.655857 32435.9387805 Gammaretrovirus 153135 Viruses Viruses 4983 0   NTclustered gi|1233685432|gb|KY484771.1| 194958 g51 i15 98.015 74.3668493150685 2872 52 99 3 1 2871 5805 8672 Porcine endogenous retrovirus A gag-pol polyprotein and env protein genes, complete cds blastn 271439 4983 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus porConc
1248887 1248887 PRJNA906294_P_NODE_70221_length_545_cov_1.646186_g66121_i0 PRJNA906294 70221 545 1.646186 8.9717137 Betaretrovirus 140052 Viruses Viruses 1005 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g66121 i0 100 3.32844036697248 544 0 99 0 1 544 3794 4337 Squirrel monkey retrovirus - HLB, complete genome blastn 1814 1005 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
1249027 1249027 PRJNA906294_S_NODE_441_length_349_cov_1.239130_g440_i0 PRJNA906294 441 349 1.23913 4.3245637 root 1 Root_unresolved Root_unresolved 603 7.259999999999999e-168   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g440 i0 98.817 95.9512893982808 338 4 97 0 12 349 1841 1504 Moloney murine leukemia virus, complete genome blastn 33487 603 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1249032 1249032 PRJNA906294_S_NODE_781_length_289_cov_1.185185_g780_i0 PRJNA906294 781 289 1.185185 3.42518465 root 1 Root_unresolved Root_unresolved 529 1.01e-145   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g780 i0 99.654 6.44982698961938 289 1 100 0 1 289 1399 1111 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 1864 529 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1249290 1249290 PRJNA909445_P_NODE_15981_length_243_cov_1.076471_g15913_i0 PRJNA909445 15981 243 1.076471 2.61582453 root 1 Root_unresolved Root_unresolved 427 3.11e-115   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g15913 i0 98.75 99.962962962963 240 3 99 0 4 243 2618 2379 Moloney murine leukemia virus, complete genome blastn 24291 427 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1249297 1249297 PRJNA909445_P_NODE_2401_length_506_cov_1.244804_g2335_i0 PRJNA909445 2401 506 1.244804 6.29870824 root 1 Root_unresolved Root_unresolved 929 0   NTclustered gi|428231112|gb|JX843707.1| 189458 g2335 i0 99.802 67.300395256917 506 1 100 0 1 506 636 131 Human betaretrovirus isolate pIW176 env gene, partial cds blastn 34054 929 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
1295132 1295132 PRJEB12982_P_NODE_16802_length_167_cov_0.974576_g16639_i0 PRJEB12982 16802 167 0.974576 1.62754192 Lentivirus humimdef1 3418650 Viruses Viruses 272 9.88e-69   NTclustered gi|254929527|gb|GQ333588.1| 11676 g16639 i0 96.364 98.7964071856287 165 6 99 0 1 165 264 100 HIV-1 isolate B08167A1 from Uganda envelope glycoprotein (env) gene, partial cds blastn 16499 272 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1295276 1295276 PRJEB12982_P_NODE_9362_length_232_cov_1.114754_g9199_i0 PRJEB12982 9362 232 1.114754 2.58622928 Lentivirus humimdef1 3418650 Viruses Viruses 396 8.319999999999995e-106   NTclustered gi|2057218147|gb|MW124063.1| 11676 g9199 i0 97.414 99.9008620689655 232 6 100 0 1 232 687 918 HIV-1 clone SN 015 from Senegal gag protein (gag) gene, complete cds; and nonfunctional pol protein (pol) gene, partial sequence blastn 23177 396 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1413336 1413336 PRJEB7614_P_NODE_382_length_412_cov_10.467363_g327_i0 PRJEB7614 382 412 10.467363 43.12553556 Lentivirus humimdef1 3418650 Viruses Viruses 497 4.23e-136   NTclustered gi|542125849|gb|KC863138.1| 11676 g327 i0 92.507 84.6650485436893 347 26 84 0 66 412 1571 1225 HIV-1 isolate C059-3A11 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 34882 497 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1447558 1447558 PRJNA1046144_P_NODE_67182_length_227_cov_4.556962_g66887_i0 PRJNA1046144 67182 227 4.556962 10.34430374 Betaretrovirus squmon 3427297 Viruses Viruses 420 4.81e-113   NTclustered gi|1666023499|gb|MK561030.1| 11856 g66887 i0 100 4.00440528634361 227 0 100 0 1 227 2079 1853 Squirrel monkey retrovirus, complete genome blastn 909 420 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
1466131 1466131 PRJNA1077954_P_NODE_22402_length_294_cov_1.153846_g22161_i0 PRJNA1077954 22402 294 1.153846 3.39230724 Soymovirus maculavaccinii 3047694 Viruses Viruses 318 2.439999999999999e-82   NTclustered gi|351582064|gb|JN205460.1| 172220 g22161 i0 86.577 16.7517006802721 298 28 99 8 5 294 2426 2719 Blueberry red ringspot virus isolate BRRSV24, complete genome blastn 4925 318 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Soymovirus Soymovirus maculavaccinii
1499083 1499083 PRJNA1115053_S_NODE_181122_length_202_cov_2.440252_g179305_i0 PRJNA1115053 181122 202 2.440252 4.92930904 Endogenous prairie dog retrovirus 2744144 Viruses Viruses 353 4.3e-93   NTclustered gi|1858807278|gb|MT361317.1| 2744144 g179305 i0 98.049 29.4108910891089 205 1 100 1 1 202 2997 2793 Endogenous prairie dog retrovirus isolate prairie dog 14-1382 Gag (gag), Pro (pro), and Pol (pol) genes, complete cds blastn 5941 353 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Endogenous prairie dog retrovirus
1517521 1517521 PRJNA1120060_P_NODE_1793222_length_281_cov_1.875000_g1775210_i0 PRJNA1120060 1793222 281 1.875 5.26875 Pinus nigra virus 1 2267679 Viruses Viruses 241 5.15e-59   NTclustered gi|1421686372|gb|MH551473.1| 2267679 g1775210 i0 82.456 3.04270462633452 285 41 99 6 1 279 2881 2600 Pinus nigra virus 1 isolate S1, complete genome blastn 855 241 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
1534267 1534267 PRJNA1120060_P_NODE_313322_length_414_cov_3.788856_g296164_i0 PRJNA1120060 313322 414 3.788856 15.68586384 Pinus nigra virus 1 2267679 Viruses Viruses 505 2.54e-138   NTclustered gi|1571847622|ref|NC_040841.1| 2267679 g296164 i0 88.675 3.00724637681159 415 45 100 2 1 414 4096 4509 Pinus nigra virus 1 isolate B2, complete genome blastn 1245 505 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
1542733 1542733 PRJNA1120060_P_NODE_578962_length_352_cov_2.455197_g561260_i0 PRJNA1120060 578962 352 2.455197 8.64229344 Pinus nigra virus 1 2267679 Viruses Viruses 300 1.08e-76   NTclustered gi|1571847622|ref|NC_040841.1| 2267679 g561260 i0 82.698 2.90625 341 56 97 1 12 352 6528 6191 Pinus nigra virus 1 isolate B2, complete genome blastn 1023 300 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
1548375 1548375 PRJNA1120060_P_NODE_95922_length_577_cov_2.815476_g81616_i0 PRJNA1120060 95922 577 2.815476 16.24529652 Pinus nigra virus 1 2267679 Viruses Viruses 326 3.04e-84   NTclustered gi|1421686372|gb|MH551473.1| 2267679 g81616 i0 76.603 2.99306759098787 577 124 99 7 1 573 3892 3323 Pinus nigra virus 1 isolate S1, complete genome blastn 1727 326 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
1585840 1585840 PRJNA1163532_P_NODE_2642_length_1157_cov_1.882353_g2503_i0 PRJNA1163532 2642 1157 1.882353 21.77882421 Gammaretrovirus murleu 3428959 Viruses Viruses 1847 0   NTclustered gi|28892668|gb|AF411814.1| 188539 g2503 i0 95.686 70.4874675885912 1159 33 100 6 1 1157 6925 8068 Amphotropic murine leukemia virus strain 1313, complete genome blastn 81554 1847 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
1590940 1590940 PRJNA1174770_P_NODE_7482_length_173_cov_0.758065_g7393_i0 PRJNA1174770 7482 173 0.758065 1.31145245 Citrus endogenous pararetrovirus 1435008 Viruses Viruses 239 1.04e-58   NTclustered gi|1189354729|gb|KY609920.1| 1435008 g7393 i0 95.364 6.12138728323699 151 6 87 1 2 152 1978 2127 Citrus endogenous pararetrovirus strain SPBR01 polyprotein gene, complete cds blastn 1059 239 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus endogenous pararetrovirus
1591402 1591402 PRJNA1175041_P_NODE_37002_length_583_cov_1.178431_g34161_i0 PRJNA1175041 37002 583 1.178431 6.87025273 Retroviridae sp. 2681591 Viruses Viruses 990 0   NTclustered gi|1870356934|gb|MT138119.1| 2681591 g34161 i0 97.418 0.996569468267582 581 15 99 0 1 581 4923 4343 Retroviridae sp. isolate bls219ret1 genomic sequence blastn 581 990 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;