RNAquarium Metadata Server
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contig_metadata

1 row where tax_clade = "non-primate mammal papillomaviruses", tax_kingdom = "Shotokuvirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 1 ✖

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 1 ✖

tax_clade 1

  • non-primate mammal papillomaviruses · 1 ✖

bioproject 1

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9767492 9767492 PRJNA851399_P_NODE_32408_length_164_cov_0.886957_g31955_i0 PRJNA851399 32408 164 0.886957 1.45460948 Bat papillomavirus 2004707 Viruses Viruses 54.7 0.004   NTclustered gi|2699893094|gb|OR952886.1| 2004707 g31955 i0 100 0.176829268292683 29 0 18 0 38 66 5480 5508 MAG: Bat papillomavirus isolate GD2016 L1 protein and E1 protein genes, complete cds; and E2 protein gene, partial cds blastn 29 54.7 1 Viruses non-primate mammal papillomaviruses Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Bat papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;