RNAquarium Metadata Server
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contig_metadata

1 row where tax_clade = "candidate division Sediment Archaea-1"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • candidate division Sediment Archaea-1 · 1 ✖

bioproject 1

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13746586 13746586 PRJEB64798_P_NODE_199571_length_167_cov_7.508475_g197805_i0 PRJEB64798 199571 167 7.508475 12.53915325 Archaea 2157 Archaea Archaea 215 1.69e-51   NTclustered gi|5359926|gb|AF142944.1| 97714 g197805 i0 93.151 79.9041916167665 146 10 87 0 9 154 895 1040 Uncultured archaeon PENDANT-33 16S ribosomal RNA gene, partial sequence blastn 13344 215 1 Archaea candidate division Sediment Archaea-1 Methanobacteriati Methanobacteriota         uncultured archaeon PENDANT-33

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;