RNAquarium Metadata Server
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contig_metadata

2 rows where tax_clade = "TCBD clade", tax_kingdom = "Viridiplantae" and tax_superkingdom = "Eukaryota"

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bioproject 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

  • TCBD clade · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
739913 739913 PRJNA758398_S_NODE_49361_length_163_cov_1.342105_g49220_i0 PRJNA758398 49361 163 1.342105 2.18763115 Halimeda discoidea.ip 1868647 Plants Plants 148 1.68e-31   NTclustered gi|1041500173|gb|KX431348.1| 1868648 g49220 i0 83.23 56.638036809816 161 27 99 0 3 163 661 501 Halimeda discoidea.ip voucher TZ0531 (GENT herbarium) heat shock protein 90 (HSP90) gene, partial cds blastn 9232 148 1 Eukaryota TCBD clade Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Halimedaceae Halimeda Halimeda discoidea.ip
1059221 1059221 PRJNA287283_P_NODE_10421_length_175_cov_0.918033_g10197_i0 PRJNA287283 10421 175 0.918033 1.60655775 Eukaryota 2759 Plants Plants 108 3.1e-19   NTclustered gi|1041500143|gb|KX431333.1| 1868645 g10197 i0 83.621 3.68571428571429 116 17 66 2 2 116 662 548 Halimeda cuneata.Arabia voucher HEC15286 (GENT herbarium) heat shock protein 90 (HSP90) gene, partial cds blastn 645 108 1 Eukaryota TCBD clade Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Halimedaceae Halimeda Halimeda cuneata.Arabia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;