RNAquarium Metadata Server
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contig_metadata

3 rows where tax_clade = "Mammalian gammaretrovirus group", tax_phylum = "Artverviricota" and tax_superkingdom = "Viruses"

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bioproject 3

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Artverviricota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Mammalian gammaretrovirus group · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30214125 30214125 PRJNA922890_P_NODE_28112_length_360_cov_0.914089_g27702_i0 PRJNA922890 28112 360 0.914089 3.2907204 Megaderma lyra retrovirus 1200308 Viruses Viruses 184 7.2e-52   NR AFM52260.1 1200308 g27702 i0 73.1 0.991666666666667 119 32 99.2 0 358 2 553 671 AFM52260.1 Pol, partial [Megaderma lyra retrovirus] diamond 357 184 1 Viruses Mammalian gammaretrovirus group Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Bat gammaretrovirus
31126766 31126766 PRJNA753112_P_NODE_23015_length_284_cov_1.327014_g22673_i0 PRJNA753112 23015 284 1.327014 3.76871976 Megaderma lyra retrovirus 1200308 Viruses Viruses 105 7.32e-24   NR AFM52260.1 1200308 g22673 i0 72.3 0.686619718309859 65 18 68.7 0 89 283 608 672 AFM52260.1 Pol, partial [Megaderma lyra retrovirus] diamond 195 105 1 Viruses Mammalian gammaretrovirus group Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Bat gammaretrovirus
32548638 32548638 PRJNA688414_P_NODE_7299_length_247_cov_0.896552_g7265_i0 PRJNA688414 7299 247 0.896552 2.21448344 Megaderma lyra retrovirus 1200308 Viruses Viruses 75.5 1.17e-13   NR AFM52260.1 1200308 g7265 i0 79.5 0.534412955465587 44 9 53.4 0 247 116 565 608 AFM52260.1 Pol, partial [Megaderma lyra retrovirus] diamond 132 75.5 1 Viruses Mammalian gammaretrovirus group Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Bat gammaretrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;