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contig_metadata

16 rows where tax_clade = "Candidatus Halobeggiatoa", tax_phylum = "Pseudomonadota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 16 ✖

tax_phylum 1

  • Pseudomonadota · 16 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Halobeggiatoa · 16 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6676117 6676117 PRJNA1148190_P_NODE_625246_length_249_cov_0.875000_g614073_i0 PRJNA1148190 625246 249 0.875 2.17875 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 133 9.08e-36   NR MDM8566148.1 3055495 g614073 i0 68.7 1.98795180722892 83 26 100 0 1 249 89 171 MDM8566148.1 electron transport complex subunit RsxD [Candidatus Halobeggiatoa sp. HSG11] diamond 495 133 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
18392507 18392507 PRJNA558770_P_NODE_290655_length_234_cov_1.557789_g288650_i0 PRJNA558770 290655 234 1.557789 3.64522626 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 84 6.51e-17   NR MDM8565179.1 3055495 g288650 i0 57.1 17.7692307692308 77 4 98.7 1 1 231 220 267 MDM8565179.1 GDP-mannose 4,6-dehydratase [Candidatus Halobeggiatoa sp. HSG11] diamond 4158 84 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
21149508 21149508 PRJNA770826_P_NODE_32677_length_166_cov_0.888889_g32506_i0 PRJNA770826 32677 166 0.888889 1.47555574 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 89 3.34e-19   NR MDM8566288.1 3055495 g32506 i0 79.6 12.6686746987952 54 11 97.6 0 3 164 177 230 MDM8566288.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Candidatus Halobeggiatoa sp. HSG11] diamond 2103 89 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
26597970 26597970 PRJNA1237347_P_NODE_352641_length_302_cov_1.008734_g346068_i0 PRJNA1237347 352641 302 1.008734 3.04637668 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 86.7 1.65e-17   NR MDM8565238.1 3055495 g346068 i0 45.9 0.973509933774834 98 53 97.4 0 295 2 197 294 MDM8565238.1 ATP-binding protein [Candidatus Halobeggiatoa sp. HSG11] diamond 294 86.7 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
26947940 26947940 PRJNA330616_P_NODE_30422_length_163_cov_0.894737_g30013_i0 PRJNA330616 30422 163 0.894737 1.45842131 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 48.1 1.53e-4   NR MDM8565756.1 3055495 g30013 i0 40 0.920245398773006 50 30 92 0 152 3 59 108 MDM8565756.1 PKD domain-containing protein [Candidatus Halobeggiatoa sp. HSG11] diamond 150 48.1 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
27027956 27027956 PRJNA1148190_P_NODE_569902_length_253_cov_1.566667_g558729_i0 PRJNA1148190 569902 253 1.566667 3.96366751 Bacteria 2 Bacteria Bacteria 104 6.74e-24   NR MDM8564118.1 3055495 g558729 i0 63.5 3.02371541501976 85 30 99.6 1 1 252 255 339 MDM8564118.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Candidatus Halobeggiatoa sp. HSG11] diamond 765 104 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
27450734 27450734 PRJNA1148190_P_NODE_491983_length_268_cov_1.492308_g480810_i0 PRJNA1148190 491983 268 1.492308 3.99938544 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 97.1 3.53e-24   NR MDM8564847.1 3055495 g480810 i0 58 0.906716417910448 81 34 90.7 0 26 268 1 81 MDM8564847.1 hypothetical protein [Candidatus Halobeggiatoa sp. HSG11] diamond 243 97.1 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
28296402 28296402 PRJEB20058_S_NODE_6286_length_233_cov_9.034884_g6248_i0 PRJEB20058 6286 233 9.034884 21.05127972 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 60.5 1.16e-8   NR MDM8566662.1 3055495 g6248 i0 55.4 0.721030042918455 56 25 72.1 0 170 3 1 56 MDM8566662.1 ApaLI family restriction endonuclease [Candidatus Halobeggiatoa sp. HSG11] diamond 168 60.5 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
28918367 28918367 PRJNA881716_P_NODE_55208_length_243_cov_0.917647_g55033_i0 PRJNA881716 55208 243 0.917647 2.22988221 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 47.4 8.85e-4   NR MDM8565298.1 3055495 g55033 i0 35.1 1.82716049382716 74 46 91.4 1 11 232 1453 1524 MDM8565298.1 PAS domain S-box protein [Candidatus Halobeggiatoa sp. HSG11] diamond 444 47.4 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
29020433 29020433 PRJNA688655_P_NODE_16488_length_241_cov_0.916667_g16423_i0 PRJNA688655 16488 241 0.916667 2.20916747 Candidatus Parabeggiatoa 1034941 Bacteria Bacteria 82.4 1.92e-16   NR MDM8565081.1 3055495 g16423 i0 53.1 4.03319502074689 81 33 98.3 2 238 2 153 230 MDM8565081.1 VWA domain-containing protein [Candidatus Halobeggiatoa sp. HSG11] diamond 972 82.4 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
29054362 29054362 PRJEB14803_P_NODE_28848_length_203_cov_1.357143_g28382_i0 PRJEB14803 28848 203 1.357143 2.75500029 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 47.8 3.74e-4   NR MDM8566588.1 3055495 g28382 i0 54.1 0.54679802955665 37 17 54.7 0 3 113 26 62 MDM8566588.1 hypothetical protein [Candidatus Halobeggiatoa sp. HSG11] diamond 111 47.8 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
29720134 29720134 PRJNA1111146_P_NODE_71610_length_263_cov_3.490476_g70472_i0 PRJNA1111146 71610 263 3.490476 9.17995188 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 114 2.35e-27   NR MDM8567186.1 3055495 g70472 i0 60 2.11026615969582 90 33 99.2 1 3 263 792 881 MDM8567186.1 N-6 DNA methylase [Candidatus Halobeggiatoa sp. HSG11] diamond 555 114 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
30012219 30012219 PRJNA390533_P_NODE_31711_length_235_cov_1.193878_g30684_i0 PRJNA390533 31711 235 1.193878 2.8056133 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 131 1.77e-33   NR MDM8567414.1 3055495 g30684 i0 76.4 2.78297872340426 72 17 91.9 0 6 221 811 882 MDM8567414.1 N-6 DNA methylase [Candidatus Halobeggiatoa sp. HSG11] diamond 654 131 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
32003219 32003219 PRJNA379145_P_NODE_43738_length_273_cov_1.791667_g41586_i0 PRJNA379145 43738 273 1.791667 4.89125091 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 67 1.47e-10   NR MDM8567715.1 3055495 g41586 i0 46 0.956043956043956 87 42 92.3 3 256 5 207 291 MDM8567715.1 DUF642 domain-containing protein [Candidatus Halobeggiatoa sp. HSG11] diamond 261 67 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
33028310 33028310 PRJEB14175_P_NODE_152924_length_273_cov_4.000000_g150657_i0 PRJEB14175 152924 273 4 10.92 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 57 3.5e-7   NR MDM8566662.1 3055495 g150657 i0 54.9 0.56043956043956 51 23 56 0 119 271 1 51 MDM8566662.1 ApaLI family restriction endonuclease [Candidatus Halobeggiatoa sp. HSG11] diamond 153 57 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11
33123717 33123717 PRJNA737474d_S_NODE_17423_length_367_cov_4.357143_g16829_i0 PRJNA737474 17423 367 4.357143 15.99071481 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 50.1 1.22e-4   NR MDM8566630.1 3055495 g16829 i0 72.4 0.237057220708447 29 8 23.7 0 213 127 118 146 MDM8566630.1 hypothetical protein [Candidatus Halobeggiatoa sp. HSG11] diamond 87 50.1 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;