RNAquarium Metadata Server
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contig_metadata

7 rows where tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Ratteibacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Ratteibacteria · 7 ✖

tax_clade 1

  • Bacteria candidate phyla · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26771026 26771026 PRJNA902848_P_NODE_13861_length_252_cov_0.871508_g13811_i0 PRJNA902848 13861 252 0.871508 2.19620016 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 128 3.8999999999999996e-32   NR MFA7328723.1 3018269 g13811 i0 63.1 1 84 31 100 0 252 1 309 392 MFA7328723.1 glycoside hydrolase family 95-like protein [Candidatus Ratteibacteria bacterium] diamond 252 128 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
26888645 26888645 PRJNA556842_P_NODE_7661_length_301_cov_4.954545_g7157_i0 PRJNA556842 7661 301 4.954545 14.91318045 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 43.1 0.0487   NR HRR96318.1 3018269 g7157 i0 24.2 0.98671096345515 99 75 98.7 0 4 300 119 217 HRR96318.1 peptide chain release factor N(5)-glutamine methyltransferase [Candidatus Ratteibacteria bacterium] diamond 297 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
30802249 30802249 PRJNA416866_P_NODE_3174_length_377_cov_1.462025_g3031_i0 PRJNA416866 3174 377 1.462025 5.51183425 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 50.8 2.9e-5   NR MFA5645262.1 3018269 g3031 i0 28.4 1.3368700265252 74 53 58.9 0 83 304 30 103 MFA5645262.1 antibiotic biosynthesis monooxygenase [Candidatus Ratteibacteria bacterium] diamond 504 50.8 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
31177232 31177232 PRJNA1148190_P_NODE_700375_length_245_cov_0.895349_g689202_i0 PRJNA1148190 700375 245 0.895349 2.19360505 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 62.8 1.65e-9   NR MEA3369538.1 3018269 g689202 i0 38.2 1.08979591836735 89 45 96.7 2 5 241 142 230 MEA3369538.1 hypothetical protein [Candidatus Ratteibacteria bacterium] diamond 267 62.8 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
31333631 31333631 PRJNA1120060_P_NODE_490076_length_368_cov_4.627119_g472466_i0 PRJNA1120060 490076 368 4.627119 17.02779792 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 47.4 0.00356   NR MFN4227563.1 3018269 g472466 i0 47.4 0.464673913043478 57 27 45.7 3 200 33 10 64 MFN4227563.1 DNA translocase FtsK [Candidatus Ratteibacteria bacterium] diamond 171 47.4 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
32932469 32932469 PRJNA1233465b_S_NODE_381233_length_156_cov_2.383178_g379548_i0 PRJNA1233465 381233 156 2.383178 3.71775768 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 86.3 1.6e-19   NR MFN4228208.1 3018269 g379548 i0 89.4 0.903846153846154 47 5 90.4 0 1 141 78 124 MFN4228208.1 hypothetical protein [Candidatus Ratteibacteria bacterium] diamond 141 86.3 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
33017087 33017087 PRJNA1233465a_S_NODE_205884_length_171_cov_1.540984_g204610_i0 PRJNA1233465 205884 171 1.540984 2.63508264 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 46.2 3.35e-4   NR MFA5393064.1 3018269 g204610 i0 55.6 0.631578947368421 36 16 63.2 0 3 110 80 115 MFA5393064.1 dUTP diphosphatase [Candidatus Ratteibacteria bacterium] diamond 108 46.2 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;