RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA999747" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA999747 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17558467 17558467 PRJNA999747_S_NODE_174_length_540_cov_6.225933_g148_i0 PRJNA999747 174 540 6.225933 33.6200382 Chondromyces crocatus 52 Bacteria Bacteria 532 1.55e-146   NTclustered gi|169977285|emb|AM946600.1| 52 g148 i0 84.574 141.25 551 69 100 14 1 540 2033 1488 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 76275 532 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
19125510 19125510 PRJNA999747_S_NODE_3815_length_161_cov_86.969231_g3783_i0 PRJNA999747 3815 161 86.969231 140.02046191 Pseudomonadati 3379134 Bacteria Bacteria 292 7.24e-75   NTclustered gi|28395338|gb|AY190663.1| 56 g3783 i0 100 522.931677018634 158 0 98 0 1 158 783 626 Polyangium cellulosum strain So9881 clone 2 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 84192 292 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
22951887 22951887 PRJNA999747_S_NODE_1618_length_237_cov_3.242718_g1586_i0 PRJNA999747 1618 237 3.242718 7.68524166 root 1 Root_unresolved Root_unresolved 161 3.3899999999999995e-35   NTclustered gi|1566478966|gb|CP012672.1| 56 g1586 i0 84.615 115.236286919831 169 18 70 8 3 167 3689909 3689745 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 27311 161 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
26646395 26646395 PRJNA999747_S_NODE_1881_length_220_cov_3.518519_g1849_i0 PRJNA999747 1881 220 3.518519 7.7407418 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 95.5 1.1199999999999999e-23   NR NOZ88117.1 2026735 g1849 i0 60.6 2.89090909090909 71 28 96.8 0 214 2 2 72 NOZ88117.1 RNA-binding protein [Deltaproteobacteria bacterium] diamond 636 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;