RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA999747" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA999747 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12753463 12753463 PRJNA999747_S_NODE_1690_length_231_cov_5.860000_g1658_i0 PRJNA999747 1690 231 5.86 13.5366 Chordata 7711 Chordata Chordata 52.8 0.021   NTclustered gi|2721460824|emb|HG999682.4| 9103 g1658 i0 100 0.242424242424242 28 0 12 0 94 121 32418365 32418392 Meleagris gallopavo genome assembly, chromosome: 3 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
17558491 17558491 PRJNA999747_S_NODE_4154_length_156_cov_1.904000_g4122_i0 PRJNA999747 4154 156 1.904 2.97024 Mus musculus 10090 Chordata Chordata 265 1.52e-66   NTclustered gi|2510669837|gb|OQ871514.1| 10090 g4122 i0 97.436 63.224358974359 156 2 99 2 2 156 4854 4700 Mus musculus clone BAC 18_2 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 9863 265 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22657602 22657602 PRJNA999747_S_NODE_2218_length_205_cov_2.936782_g2186_i0 PRJNA999747 2218 205 2.936782 6.0204031 Lampetra planeri 7750 Chordata Chordata 62.1 2.97e-5   NTclustered gi|2805746514|emb|OZ078535.1| 7750 g2186 i0 100 0.658536585365854 33 0 16 0 3 35 3598062 3598030 Lampetra planeri genome assembly, chromosome: 50 blastn 135 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
22657609 22657609 PRJNA999747_S_NODE_2778_length_186_cov_66.554839_g2746_i0 PRJNA999747 2778 186 66.554839 123.79200054 Mus musculus 10090 Chordata Chordata 305 1.11e-78   NTclustered gi|2904934889|gb|PQ737812.1| 10090 g2746 i0 96.237 103.376344086022 186 7 100 0 1 186 5 190 Mus musculus lncRNA222 lncRNA, complete sequence blastn 19228 305 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22951898 22951898 PRJNA999747_S_NODE_2478_length_196_cov_3.054545_g2446_i0 PRJNA999747 2478 196 3.054545 5.9869082 root 1 Root_unresolved Root_unresolved 361 2.48e-95   NTclustered gi|2645168801|gb|OR992004.1| 10090 g2446 i0 100 99.9897959183673 195 0 99 0 1 195 1032 838 Mus musculus transgenic puromycin-resistant protein (Puro) gene, complete cds; red fluorescence protein (RFP) gene, complete sequence; and GFP-I-SceI (GFP-I-SceI) gene, complete cds blastn 19598 361 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27095537 27095537 PRJNA999747_S_NODE_1782_length_226_cov_2.825641_g1750_i0 PRJNA999747 1782 226 2.825641 6.38594866 Metazoa 33208 Chordata Chordata 91.3 2.48e-19   NR XP_051824300.1 38775 g1750 i0 61.6 3.88938053097345 73 26 96.9 1 5 223 293 363 XP_051824300.1 polyadenylate-binding protein 4-like [Antechinus flavipes] diamond 879 92 0.992391304347826 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dasyuromorphia Dasyuridae Antechinus Antechinus flavipes
28611487 28611487 PRJNA999747_S_NODE_4487_length_151_cov_1.591667_g4455_i0 PRJNA999747 4487 151 1.591667 2.40341717 Opisthokonta 33154 Chordata Chordata 66.6 1.42e-12   NR XP_019615044.1 7741 g4455 i0 62.5 8.3046357615894 48 18 95.4 0 4 147 8 55 XP_019615044.1 PREDICTED: eukaryotic translation initiation factor 1-like isoform X2 [Branchiostoma belcheri] diamond 1254 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29963409 29963409 PRJNA999747_S_NODE_3571_length_166_cov_3.962963_g3539_i0 PRJNA999747 3571 166 3.962963 6.57851858 Staurois parvus 386267 Chordata Chordata 40.4 0.0338   NR CAI9594042.1 386267 g3539 i0 65 0.36144578313253 20 7 36.1 0 149 90 3 22 CAI9594042.1 unnamed protein product [Staurois parvus] diamond 60 40.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30500488 30500488 PRJNA999747_S_NODE_533_length_368_cov_2.531157_g501_i0 PRJNA999747 533 368 2.531157 9.31465776 Clavelina lepadiformis 159417 Chordata Chordata 125 2.13e-30   NR CAK8689709.1 159417 g501 i0 64.7 0.970108695652174 119 42 97 0 3 359 628 746 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 357 125 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
31543554 31543554 PRJNA999747_S_NODE_3556_length_167_cov_1.750000_g3524_i0 PRJNA999747 3556 167 1.75 2.9225 Varanus komodoensis 61221 Chordata Chordata 67 1.93e-11   NR KAF7248073.1 61221 g3524 i0 64.2 0.952095808383233 53 18 93.4 1 164 9 86 138 KAF7248073.1 Neuronal vesicle trafficking-associated protein 1 [Varanus komodoensis] diamond 159 67 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
32303068 32303068 PRJNA999747_S_NODE_1739_length_229_cov_2.878788_g1707_i0 PRJNA999747 1739 229 2.878788 6.59242452 Rana temporaria 8407 Chordata Chordata 82.4 3.02e-16   NR XP_040201177.1 8407 g1707 i0 52.9 2.75109170305677 70 32 91.7 1 14 223 93 161 XP_040201177.1 peptidyl-prolyl cis-trans isomerase FKBP4 [Rana temporaria] diamond 630 82.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
32908008 32908008 PRJNA999747_S_NODE_2540_length_194_cov_2.325153_g2508_i0 PRJNA999747 2540 194 2.325153 4.51079682 Chordata 7711 Chordata Chordata 63.5 8.83e-10   NR XP_032805637.1 7757 g2508 i0 80.6 4.7319587628866 36 7 55.7 0 189 82 472 507 XP_032805637.1 inositol-3-phosphate synthase 1 [Petromyzon marinus] diamond 918 63.9 0.993740219092332 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;